RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62] (200 letters) >gnl|CDD|171993 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional. Length = 453 Score = 27.7 bits (62), Expect = 2.2 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%) Query: 88 PTFRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQH--MDYKGKTE 145 P+ R+NQ +I+ P E+ + A ++ Y +D+ + Sbjct: 245 PSRRKNQRLIDEAALPDAEERLRQARA-----------VADRLLAAGYVPIGLDHFALPD 293 Query: 146 QE--KRALAKQSRDDFQRYATAQA 167 E + +FQ Y T + Sbjct: 294 DELAIAQREGRLHRNFQGYTTDRC 317 >gnl|CDD|151035 pfam10463, Peptidase_U49, Peptidase U49. This family contains Lit peptidase from Escherichia coli. Lit protease functions in bacterial cell death in response to infection by bacteriophage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death. Length = 203 Score = 26.7 bits (59), Expect = 4.0 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%) Query: 97 IENLRKPTEAEKEKILAARDRYQKTNNE---EAIASIIWHRYQH--MDYKGKTEQEKRAL 151 E L P E + E YQ NE A+A I+ H H + ++G + E Sbjct: 68 PEGLPNPEENKDESP---EQFYQPAVNELFLCALAWILLHEVAHIILQHEGNSSNE---P 121 Query: 152 AKQSRDDFQRYAT 164 + + YAT Sbjct: 122 SLDEEKEADSYAT 134 >gnl|CDD|165568 PHA03322, PHA03322, tegument protein VP11/12; Provisional. Length = 674 Score = 26.5 bits (58), Expect = 4.4 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 7/42 (16%) Query: 61 SDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRK 102 +D P P+ DEP++ TF P L K Sbjct: 619 TDGGSPVQFPD-------DEPVQCQVTETFAAFTPRAHCLGK 653 >gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation. Length = 187 Score = 26.6 bits (59), Expect = 4.7 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 75 NAHGDEPIKKSEKPTFRRNQPVI 97 NA D P+ + K T R N+PV+ Sbjct: 98 NAMTDSPVLMAAKATLRNNKPVV 120 >gnl|CDD|181920 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional. Length = 387 Score = 26.3 bits (58), Expect = 5.3 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 105 EAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKR---ALAKQSRDDFQR 161 E +K+ AA+ K E A+ K K E E + A AK++ + ++ Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAK-----AAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169 Query: 162 YATAQAANQKAAD 174 A A+AA + AA+ Sbjct: 170 KAEAEAAKKAAAE 182 >gnl|CDD|178702 PLN03157, PLN03157, spermidine hydroxycinnamoyl transferase; Provisional. Length = 447 Score = 26.3 bits (58), Expect = 6.2 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%) Query: 50 GEPRKPTP-LDHSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEK 108 GEP P DH++ HPP+L ++N +E KK+ + ++ +E L+ +A + Sbjct: 192 GEPPLSAPVFDHAEFSHPPLLIGEQDNV--EERKKKTTVAMLKLSKDQVEKLKD--KANE 247 Query: 109 EKILAARDRYQKTNNEEAIASIIW 132 + + D + E +A +W Sbjct: 248 SR---SSDNGRPYTRYETVAGHVW 268 >gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated. Length = 339 Score = 26.1 bits (58), Expect = 6.4 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 12/76 (15%) Query: 111 ILAARDRYQKTN-NEEAIASIIWHRYQHMDY-----KGKTEQE---KRALAKQSRDDFQR 161 I AA+ ++ + AI +I+ +H DY K + E K A A D Sbjct: 58 IAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAKNAWA---FDIMAV 114 Query: 162 YATAQAANQKAADMLM 177 A+ A + A D+L Sbjct: 115 CASFPIALKVAKDLLY 130 >gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional. Length = 194 Score = 25.7 bits (56), Expect = 7.9 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%) Query: 90 FRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASII 131 + R + +EN RK + EKE++L K NE I I+ Sbjct: 63 YLRERADLENYRKRVQKEKEELL-------KYGNESLILEIL 97 >gnl|CDD|182079 PRK09793, PRK09793, methyl-accepting protein IV; Provisional. Length = 533 Score = 25.4 bits (55), Expect = 10.0 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 156 RDDFQRYATAQAANQKAADM------LMLATYGLQYDDSLTKIQDPP 196 RDD QR + +NQ+ A + ++ A+ L +LT + P Sbjct: 34 RDDLQRLNQVEQSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPA 80 >gnl|CDD|164934 PHA02538, N, capsid protein; Provisional. Length = 348 Score = 25.5 bits (56), Expect = 10.0 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 157 DDFQRYATAQAANQKAADMLMLATYGLQYDDSLTKIQDP 195 DDFQ+ Q+A D +M+ G+ + + +P Sbjct: 124 DDFQKLIREFIQKQQALDRIMIGWNGVSAAATTDRSANP 162 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.311 0.129 0.370 Gapped Lambda K H 0.267 0.0684 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,275,221 Number of extensions: 197180 Number of successful extensions: 362 Number of sequences better than 10.0: 1 Number of HSP's gapped: 361 Number of HSP's successfully gapped: 32 Length of query: 200 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 111 Effective length of database: 4,071,361 Effective search space: 451921071 Effective search space used: 451921071 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 55 (25.1 bits)