RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>gnl|CDD|171993 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional.
          Length = 453

 Score = 27.7 bits (62), Expect = 2.2
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%)

Query: 88  PTFRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQH--MDYKGKTE 145
           P+ R+NQ +I+    P   E+ +   A               ++   Y    +D+    +
Sbjct: 245 PSRRKNQRLIDEAALPDAEERLRQARA-----------VADRLLAAGYVPIGLDHFALPD 293

Query: 146 QE--KRALAKQSRDDFQRYATAQA 167
            E        +   +FQ Y T + 
Sbjct: 294 DELAIAQREGRLHRNFQGYTTDRC 317


>gnl|CDD|151035 pfam10463, Peptidase_U49, Peptidase U49.  This family contains Lit
           peptidase from Escherichia coli. Lit protease functions
           in bacterial cell death in response to infection by
           bacteriophage T4. Following binding of Gol peptide to
           domains II and III of elongation factor Tu, the Lit
           peptidase cleaves domain I of the elongation factor.
           This prevents binding of guanine nucleotides, shuts down
           translation and leads to cell death.
          Length = 203

 Score = 26.7 bits (59), Expect = 4.0
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 97  IENLRKPTEAEKEKILAARDRYQKTNNE---EAIASIIWHRYQH--MDYKGKTEQEKRAL 151
            E L  P E + E        YQ   NE    A+A I+ H   H  + ++G +  E    
Sbjct: 68  PEGLPNPEENKDESP---EQFYQPAVNELFLCALAWILLHEVAHIILQHEGNSSNE---P 121

Query: 152 AKQSRDDFQRYAT 164
           +     +   YAT
Sbjct: 122 SLDEEKEADSYAT 134


>gnl|CDD|165568 PHA03322, PHA03322, tegument protein VP11/12; Provisional.
          Length = 674

 Score = 26.5 bits (58), Expect = 4.4
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 7/42 (16%)

Query: 61  SDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRK 102
           +D   P   P+       DEP++     TF    P    L K
Sbjct: 619 TDGGSPVQFPD-------DEPVQCQVTETFAAFTPRAHCLGK 653


>gnl|CDD|131899 TIGR02852, spore_dpaB, dipicolinic acid synthetase, B subunit.
           Members of this family represent the B subunit of
           dipicolinic acid synthetase, an enzyme that synthesizes
           a small molecule that appears to confer heat stability
           to bacterial endospores such as those of Bacillus
           subtilis. The A and B subunits are together in what was
           originally designated the spoVF locus for stage V of
           endospore formation.
          Length = 187

 Score = 26.6 bits (59), Expect = 4.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 75  NAHGDEPIKKSEKPTFRRNQPVI 97
           NA  D P+  + K T R N+PV+
Sbjct: 98  NAMTDSPVLMAAKATLRNNKPVV 120


>gnl|CDD|181920 PRK09510, tolA, cell envelope integrity inner membrane protein
           TolA; Provisional.
          Length = 387

 Score = 26.3 bits (58), Expect = 5.3
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 105 EAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKR---ALAKQSRDDFQR 161
           E +K+   AA+    K    E  A+           K K E E +   A AK++  + ++
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAK-----AAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169

Query: 162 YATAQAANQKAAD 174
            A A+AA + AA+
Sbjct: 170 KAEAEAAKKAAAE 182


>gnl|CDD|178702 PLN03157, PLN03157, spermidine hydroxycinnamoyl transferase;
           Provisional.
          Length = 447

 Score = 26.3 bits (58), Expect = 6.2
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 50  GEPRKPTP-LDHSDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEK 108
           GEP    P  DH++  HPP+L   ++N   +E  KK+     + ++  +E L+   +A +
Sbjct: 192 GEPPLSAPVFDHAEFSHPPLLIGEQDNV--EERKKKTTVAMLKLSKDQVEKLKD--KANE 247

Query: 109 EKILAARDRYQKTNNEEAIASIIW 132
            +   + D  +     E +A  +W
Sbjct: 248 SR---SSDNGRPYTRYETVAGHVW 268


>gnl|CDD|180722 PRK06840, PRK06840, hypothetical protein; Validated.
          Length = 339

 Score = 26.1 bits (58), Expect = 6.4
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 111 ILAARDRYQKTN-NEEAIASIIWHRYQHMDY-----KGKTEQE---KRALAKQSRDDFQR 161
           I AA+   ++   +  AI  +I+   +H DY       K + E   K A A    D    
Sbjct: 58  IAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAKNAWA---FDIMAV 114

Query: 162 YATAQAANQKAADMLM 177
            A+   A + A D+L 
Sbjct: 115 CASFPIALKVAKDLLY 130


>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
          Length = 194

 Score = 25.7 bits (56), Expect = 7.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 90  FRRNQPVIENLRKPTEAEKEKILAARDRYQKTNNEEAIASII 131
           + R +  +EN RK  + EKE++L       K  NE  I  I+
Sbjct: 63  YLRERADLENYRKRVQKEKEELL-------KYGNESLILEIL 97


>gnl|CDD|182079 PRK09793, PRK09793, methyl-accepting protein IV; Provisional.
          Length = 533

 Score = 25.4 bits (55), Expect = 10.0
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 156 RDDFQRYATAQAANQKAADM------LMLATYGLQYDDSLTKIQDPP 196
           RDD QR    + +NQ+ A +      ++ A+  L    +LT +  P 
Sbjct: 34  RDDLQRLNQVEQSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPA 80


>gnl|CDD|164934 PHA02538, N, capsid protein; Provisional.
          Length = 348

 Score = 25.5 bits (56), Expect = 10.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 157 DDFQRYATAQAANQKAADMLMLATYGLQYDDSLTKIQDP 195
           DDFQ+        Q+A D +M+   G+    +  +  +P
Sbjct: 124 DDFQKLIREFIQKQQALDRIMIGWNGVSAAATTDRSANP 162


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,275,221
Number of extensions: 197180
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 32
Length of query: 200
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,071,361
Effective search space: 451921071
Effective search space used: 451921071
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)