RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 34.9 bits (79), Expect = 0.011
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 112 LAARDRYQKTNNEEAIASIIWH-----RYQHMDYKGKT-EQEKRALAKQSRDDFQRYATA 165
           +A  DR   T   E+I    W      R Q +D   K  EQE R  AK+  +++ +  + 
Sbjct: 74  IAQADRL--TQEPESIRK--WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129

Query: 166 QAA----NQKAAD 174
           Q      N + AD
Sbjct: 130 QVEKNKINNRIAD 142


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 31.3 bits (70), Expect = 0.13
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 35/89 (39%)

Query: 103  PTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDF--- 159
            P+E + E +L   +R ++ +NE                    E + RA  +Q  +DF   
Sbjct: 1279 PSEDQNEFLL---ERTREIHNE-------------------AESQLRAAQQQWGNDFYKR 1316

Query: 160  -QRYATAQAANQKAADMLMLATYGLQYDD 187
              R A  + A         LATYGL  DD
Sbjct: 1317 DPRIAPLRGA---------LATYGLTIDD 1336


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.21
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)

Query: 147 EKRALAK-QSRDDFQRYA--TAQAANQKA 172
           EK+AL K Q+    + YA  +A A   KA
Sbjct: 18  EKQALKKLQA--SLKLYADDSAPALAIKA 44


>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
           protein folding, acetylation, ATP-binding,
           calmodulin-binding, chaperone, cytoplasm; HET: ATP;
           2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A*
           2qxl_A*
          Length = 675

 Score = 27.9 bits (61), Expect = 1.5
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 98  ENLRKPTEAEKEKILAARDRYQKTNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRD 157
           E     ++AEK K+    ++ ++   +E   SI          K K   +   LA     
Sbjct: 570 EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSI----------KAKYIAKYEELASLGNI 619

Query: 158 DFQRYATAQAANQKAADMLMLAT 180
              RY   +   ++A      A+
Sbjct: 620 IRGRYLAKEEEKKQAIRSKQEAS 642


>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich
           protein, PSI-2, protein structure initiative; 1.65A
           {Enterococcus faecalis V583} SCOP: d.218.1.14
          Length = 173

 Score = 26.9 bits (59), Expect = 3.1
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 118 YQKTNNEEAIASIIWHRY--QHMDYKGKTEQEKRALAKQSRDDFQRYATAQAA 168
           YQ  N +E +  + +  Y  ++          K+ LA+   D   +Y   + A
Sbjct: 106 YQFDNTQEILRHLAFRNYLRENPAIATTYGTLKKQLAQAHPDSIDKYMDGKDA 158


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,677,992
Number of extensions: 71746
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 12
Length of query: 200
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 112
Effective length of database: 3,559,758
Effective search space: 398692896
Effective search space used: 398692896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.2 bits)