BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764500|ref|YP_003064987.2| hypothetical protein
CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 200

 Score =  414 bits (1065), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MPLSGYSVSIKKLGIVSVLIPVVLGVSNCDHSDSQHPPVIPILKDDKNDGEPRKPTPLDH 60
           MPLSGYSVSIKKLGIVSVLIPVVLGVSNCDHSDSQHPPVIPILKDDKNDGEPRKPTPLDH
Sbjct: 1   MPLSGYSVSIKKLGIVSVLIPVVLGVSNCDHSDSQHPPVIPILKDDKNDGEPRKPTPLDH 60

Query: 61  SDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEKEKILAARDRYQK 120
           SDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEKEKILAARDRYQK
Sbjct: 61  SDSQHPPVLPNSENNAHGDEPIKKSEKPTFRRNQPVIENLRKPTEAEKEKILAARDRYQK 120

Query: 121 TNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLMLAT 180
           TNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLMLAT
Sbjct: 121 TNNEEAIASIIWHRYQHMDYKGKTEQEKRALAKQSRDDFQRYATAQAANQKAADMLMLAT 180

Query: 181 YGLQYDDSLTKIQDPPKMEE 200
           YGLQYDDSLTKIQDPPKMEE
Sbjct: 181 YGLQYDDSLTKIQDPPKMEE 200


>gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 195

 Score = 28.5 bits (62), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 11 KKLGIVSVLIPVVLGVSNCDHSDS 34
          K + IVS L+  VL +S+CD  DS
Sbjct: 4  KNILIVSTLVICVLSISSCDLGDS 27


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.311    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,731
Number of Sequences: 1233
Number of extensions: 5402
Number of successful extensions: 14
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 200
length of database: 328,796
effective HSP length: 70
effective length of query: 130
effective length of database: 242,486
effective search space: 31523180
effective search space used: 31523180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 36 (18.5 bits)