HHsearch alignment for GI: 255764501 and conserved domain: COG1176
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=281.44 Aligned_cols=226 Identities=27% Similarity=0.345 Sum_probs=209.8
Q ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88679999956989999999999999999999999999999999707996179999999999988999999999999722
Q gi|255764501|r 38 MPLISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGR 117 (535)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~l~nTl~~a~~s~~~~~~ig~~~A~~~~~~~~~~~~~~~~~~~lp~~~P~~v~~~~~~~~~~~ 117 (535)
T Consensus 50 ~~l~nY~~~~~~~~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~~~~r~~ll~lvilPfwts~LiR~yawi~iL~~ 129 (287)
T COG1176 50 FTLGNYARLLTDSLYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILGR 129 (287)
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 10788999768358999999999999999999999999999999967737999999999999989999999999999834
Q ss_pred CCCCCCHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 785421033158887--643332699999999987665489999998508889999998621471467754420016640
Q gi|255764501|r 118 TGWIAQLCQWLGIVY--QFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQ 195 (535)
Q Consensus 118 ~G~~~~~l~~~g~~~--~~~~~~~~~iii~~~~~~~p~~~l~~~~~l~~i~~~~~eaA~~lGas~~~~f~~v~lP~~~p~ 195 (535)
T Consensus 130 ~G~iN~~L~~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~pG 209 (287)
T COG1176 130 NGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSLPG 209 (287)
T ss_pred CCHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCHHH
T ss_conf 77164889976887886798805336768999986599999999999839978999998759976547642032177189
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 245777877765258415664036655441145556777653200000013455788999998530134
Q gi|255764501|r 196 ILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFNQKF 264 (535)
Q Consensus 196 i~~~~~l~f~~~~~~f~~~~~lgg~~~~~tl~~~iy~~~~~~~~~~~aa~la~il~~~~~~~~~~~~~~ 264 (535)
T Consensus 210 i~aG~~lVFi~alG~fi~P~lLGG~-~~~~ig~lI~~q~~~~~nwp~asA~sv~L~~i~~~~~~~~~~~ 277 (287)
T COG1176 210 IIAGSLLVFIPALGSFVTPALLGGP-KVLMIGNLIYQQFLSARNWPFASALAVVLLLVVLLLLLLYLLF 277 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999989775889988985697-5253999999998520584478999999999999999999999