HHsearch alignment for GI: 255764501 and conserved domain: COG1176
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].
Probab=100.00 E-value=4.9e-36 Score=208.48 Aligned_cols=215 Identities=14% Similarity=0.164 Sum_probs=184.5
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01346764383547999999999999765665211112210002211565126799999997465532376676643012
Q gi|255764501|r 316 AKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLL 395 (535)
Q Consensus 316 ~~~~~~~~~~~~~~~a~~~Sl~~s~~~~~i~~~l~l~~a~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~ 395 (535)
T Consensus 52 l~nY~~~~~~~~y~~v~~~Sl~iA~~~T~~~lligyP~Ay~la~~~----~~~r~~ll~lvilPfwts~LiR~yawi~iL 127 (287)
T COG1176 52 LGNYARLLTDSLYLTVLLRSLWIAALVTLICLLLGYPVAYFLARSP----PRWRNLLLLLVILPFWTSLLIRTYAWIVIL 127 (287)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7889997683589999999999999999999999999999999677----379999999999999899999999999998
Q ss_pred CCCCC---------------CCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 34677---------------566553443102465212156999999897289778999997397876999999999546
Q gi|255764501|r 396 KNTVN---------------LTSSSYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALK 460 (535)
Q Consensus 396 ~~~~~---------------~~~~~~~~iila~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~lGa~~~~~f~~I~lPll~ 460 (535)
T Consensus 128 ~~~G~iN~~L~~lGl~~~p~~ll~~~~aV~igmvy~~lPfmiLPly~al~~id~~L~eAA~dLGA~~~~~F~~VilPLs~ 207 (287)
T COG1176 128 GRNGLINQALLALGLIDEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVILPLSL 207 (287)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHEEECCCH
T ss_conf 34771648899768878867988053367689999865999999999998399789999987599765476420321771
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH---HHHHHHHHHCCCC
Q ss_conf 89999999999998511011678648983028989998861-79813699999999999999---9999999714668
Q gi|255764501|r 461 RLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLG-SYRQSDAVVTALLLLSLCLG---LFSLLEYLSGKEY 534 (535)
Q Consensus 461 p~i~~~~~l~f~~s~~e~~~~~ll~~~~~~Tl~~~i~~~~~-~~~~~~a~a~a~il~~i~~~---~~~l~~~l~~r~~ 534 (535)
T Consensus 208 pGi~aG~~lVFi~alG~fi~P~lLGG~~~~~ig~lI~~q~~~~~nwp~asA~sv~L~~i~~~~~~~~~~~~~~~~~~~ 285 (287)
T COG1176 208 PGIIAGSLLVFIPALGSFVTPALLGGPKVLMIGNLIYQQFLSARNWPFASALAVVLLLVVLLLLLLYLLFRRRRGAKG 285 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999989775889988985697525399999999852058447899999999999999999999998742024