HHsearch alignment for GI: 255764501 and conserved domain: COG1177

>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=100.00  E-value=2.8e-45  Score=257.67  Aligned_cols=240  Identities=20%  Similarity=0.290  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC-------------CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4699999999999974123221000-------------110013467643835479999999999997656652111122
Q gi|255764501|r  288 RWWDFFLISCAIWFFILPLLAIIIE-------------GMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLL  354 (535)
Q Consensus       288 ~~~~~~~~~~~~l~~i~pl~~ii~~-------------~~~~~~~~~~~~~~~~~~a~~~Sl~~s~~~~~i~~~l~l~~a  354 (535)
T Consensus        10 ~~~~~~~~~l~~~fLylPi~~~v~~Sfn~~~~~~~~p~G~Sl~WY~~l~~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA   89 (267)
T COG1177          10 RIFLKLYLALVLLFLYLPLLVLVLYSFNSSRLGLVFPPGFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAA   89 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999985058887777899878899999857848999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCH
Q ss_conf             10002211565126799999997465532376676643012346775665534431024652121569999998972897
Q gi|255764501|r  355 WTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAE  434 (535)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~~~~~~~~~~iila~~~~~lP~~~~~l~~~l~~i~~  434 (535)
T Consensus        90 ~al~r~----~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~--~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~  163 (267)
T COG1177          90 LALARY----RFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALG--LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDR  163 (267)
T ss_pred             HHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             999970----40268999999974241509999999999999868--875299999999999866899999999973896


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             78999997397876999999999546899999999999985110116786489830289899988617981369999999
Q gi|255764501|r  435 RYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALL  514 (535)
Q Consensus       435 ~l~eaA~~lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~~ll~~~~~~Tl~~~i~~~~~~~~~~~a~a~a~i  514 (535)
T Consensus       164 ~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstl  243 (267)
T COG1177         164 SLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGFTTLPLQIYSMIRRGITPEINALSTL  243 (267)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             79999987699888898997697527999999999999998677863113289987218999998655898199999999


Q ss_pred             HHHHHHHHHHHHHHHHCCC
Q ss_conf             9999999999999971466
Q gi|255764501|r  515 LLSLCLGLFSLLEYLSGKE  533 (535)
Q Consensus       515 l~~i~~~~~~l~~~l~~r~  533 (535)
T Consensus       244 l~~~~~ll~~~~~~~~~~~  262 (267)
T COG1177         244 LLLLSLLLILLASRLLRRR  262 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999986433