HHsearch alignment for GI: 255764501 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=100.00 E-value=2.8e-45 Score=257.67 Aligned_cols=240 Identities=20% Similarity=0.290 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-------------CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4699999999999974123221000-------------110013467643835479999999999997656652111122
Q gi|255764501|r 288 RWWDFFLISCAIWFFILPLLAIIIE-------------GMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLL 354 (535)
Q Consensus 288 ~~~~~~~~~~~~l~~i~pl~~ii~~-------------~~~~~~~~~~~~~~~~~~a~~~Sl~~s~~~~~i~~~l~l~~a 354 (535)
T Consensus 10 ~~~~~~~~~l~~~fLylPi~~~v~~Sfn~~~~~~~~p~G~Sl~WY~~l~~~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA 89 (267)
T COG1177 10 RIFLKLYLALVLLFLYLPLLVLVLYSFNSSRLGLVFPPGFSLKWYGALFSDPRLLSALWNSLLIALLSALLATLLGTLAA 89 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999985058887777899878899999857848999999999999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCH
Q ss_conf 10002211565126799999997465532376676643012346775665534431024652121569999998972897
Q gi|255764501|r 355 WTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAE 434 (535)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~~~~~~~~~~iila~~~~~lP~~~~~l~~~l~~i~~ 434 (535)
T Consensus 90 ~al~r~----~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~--~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~ 163 (267)
T COG1177 90 LALARY----RFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALG--LPGGFWTIVLAHIVFALPFVVVVVSARLQGFDR 163 (267)
T ss_pred HHHHHC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999970----40268999999974241509999999999999868--875299999999999866899999999973896
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 78999997397876999999999546899999999999985110116786489830289899988617981369999999
Q gi|255764501|r 435 RYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALL 514 (535)
Q Consensus 435 ~l~eaA~~lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~~ll~~~~~~Tl~~~i~~~~~~~~~~~a~a~a~i 514 (535)
T Consensus 164 ~L~eAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp~~~TLP~~i~s~~r~~~~P~i~Alstl 243 (267)
T COG1177 164 SLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGFTTLPLQIYSMIRRGITPEINALSTL 243 (267)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 79999987699888898997697527999999999999998677863113289987218999998655898199999999
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999971466
Q gi|255764501|r 515 LLSLCLGLFSLLEYLSGKE 533 (535)
Q Consensus 515 l~~i~~~~~~l~~~l~~r~ 533 (535)
T Consensus 244 l~~~~~ll~~~~~~~~~~~ 262 (267)
T COG1177 244 LLLLSLLLILLASRLLRRR 262 (267)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999986433