HHsearch alignment for GI: 255764501 and conserved domain: PRK11365
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional.
Probab=99.67 E-value=5.1e-15 Score=96.64 Aligned_cols=201 Identities=12% Similarity=0.046 Sum_probs=142.5
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 34676438354799999999999976566521111221000221156512679999999746553237667664301234
Q gi|255764501|r 318 LLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKN 397 (535)
Q Consensus 318 ~~~~~~~~~~~~~a~~~Sl~~s~~~~~i~~~l~l~~a~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~ 397 (535)
T Consensus 48 ~~~~l~~~g~l~~~~~~Tl~r~~~Gf~l~~~~Gi~lGil~g~-----~~~~~~~~~P~~~~l~~iP~ia~~Pl~ilwfG~ 122 (263)
T PRK11365 48 AFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGLISGL-----SRWGERLLDTSIQMLRNVPHLALIPLVILWFGI 122 (263)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 999985484599999999999999999999999999999998-----699998758599999765799999999999715
Q ss_pred CCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 67756655344310246521215699999989728977899999739787699999999954689999999999998511
Q gi|255764501|r 398 TVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGD 477 (535)
Q Consensus 398 ~~~~~~~~~~~iila~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e 477 (535)
T Consensus 123 g----~~~~i~~i---~~~~~~pi~~nt~~Gv~~v~~~~~~~ar~~g~s~~~~l~~V~lP~alP~i~~glria~~~a~~~ 195 (263)
T PRK11365 123 D----ESAKIFLV---ALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLT 195 (263)
T ss_pred C----CCHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7----42044788---6510428899998887549999999998729999999999898006889999999999999999
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0116786489830289899988617981369999999999999999999997146
Q gi|255764501|r 478 FGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGK 532 (535)
Q Consensus 478 ~~~~~ll~~~~~~Tl~~~i~~~~~~~~~~~a~a~a~il~~i~~~~~~l~~~l~~r 532 (535)
T Consensus 196 ~v~aE~i~~~--~GLG~~i~~a~~~~~~~~v~a~ii~i~llg~~l~~~~~~lerr 248 (263)
T PRK11365 196 LIVAETISAN--SGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERL 248 (263)
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998446--9888999999987068899999999999999999999999999