HHsearch alignment for GI: 255764501 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.85 E-value=7.2e-19 Score=117.10 Aligned_cols=173 Identities=18% Similarity=0.281 Sum_probs=146.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
Q ss_conf 98999999999999999999999999999999970799617999999999998899999999999972278542103315
Q gi|255764501|r 49 DSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWL 128 (535)
Q Consensus 49 ~~~~~~~l~nTl~~a~~s~~~~~~ig~~~A~~~~~~~~~~~~~~~~~~~lp~~~P~~v~~~~~~~~~~~~G~~~~~l~~~ 128 (535)
T Consensus 81 ~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~-~~~~~l~pild~mQTiP~fvyLip~i~lfGi----------- 148 (267)
T TIGR03416 81 NQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRP-WLYAIMRPVLDLMQTLPTFVYLIPALVLFGL----------- 148 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----------
T ss_conf 8715899999999999999999999999999998169-9999999999874315467999999999488-----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 88876433326999999999876654899999985088899999986214714677544200166402457778777652
Q gi|255764501|r 129 GIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCF 208 (535)
Q Consensus 129 g~~~~~~~~~~~~iii~~~~~~~p~~~l~~~~~l~~i~~~~~eaA~~lGas~~~~f~~v~lP~~~p~i~~~~~l~f~~~~ 208 (535)
T Consensus 149 ---------G~~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al 219 (267)
T TIGR03416 149 ---------GMVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSL 219 (267)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf ---------70569999999998899999999998567689999998399898897994184158999999999999999
Q ss_pred CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 584156640366554411455567776532000000134
Q gi|255764501|r 209 ASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLS 247 (535)
Q Consensus 209 ~~f~~~~~lgg~~~~~tl~~~iy~~~~~~~~~~~aa~la 247 (535)
T Consensus 220 ~mvviaa~IGa~----GLG~~v~~~l~~-~~~g~~l~~g 253 (267)
T TIGR03416 220 SMVVIAALVGAD----GLGVPVVRALNT-VNIALGFEAG 253 (267)
T ss_pred HHHHHHHHHCCC----CCHHHHHHHHHH-CCHHHHHHHH
T ss_conf 999999996788----536999999863-3568899999