HHsearch alignment for GI: 255764501 and conserved domain: TIGR03416

>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.85  E-value=7.2e-19  Score=117.10  Aligned_cols=173  Identities=18%  Similarity=0.281  Sum_probs=146.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHC
Q ss_conf             98999999999999999999999999999999970799617999999999998899999999999972278542103315
Q gi|255764501|r   49 DSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWL  128 (535)
Q Consensus        49 ~~~~~~~l~nTl~~a~~s~~~~~~ig~~~A~~~~~~~~~~~~~~~~~~~lp~~~P~~v~~~~~~~~~~~~G~~~~~l~~~  128 (535)
T Consensus        81 ~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s~-~~~~~l~pild~mQTiP~fvyLip~i~lfGi-----------  148 (267)
T TIGR03416        81 NQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHRP-WLYAIMRPVLDLMQTLPTFVYLIPALVLFGL-----------  148 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----------
T ss_conf             8715899999999999999999999999999998169-9999999999874315467999999999488-----------


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             88876433326999999999876654899999985088899999986214714677544200166402457778777652
Q gi|255764501|r  129 GIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCF  208 (535)
Q Consensus       129 g~~~~~~~~~~~~iii~~~~~~~p~~~l~~~~~l~~i~~~~~eaA~~lGas~~~~f~~v~lP~~~p~i~~~~~l~f~~~~  208 (535)
T Consensus       149 ---------G~~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al  219 (267)
T TIGR03416       149 ---------GMVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSL  219 (267)
T ss_pred             ---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             ---------70569999999998899999999998567689999998399898897994184158999999999999999


Q ss_pred             CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             584156640366554411455567776532000000134
Q gi|255764501|r  209 ASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLS  247 (535)
Q Consensus       209 ~~f~~~~~lgg~~~~~tl~~~iy~~~~~~~~~~~aa~la  247 (535)
T Consensus       220 ~mvviaa~IGa~----GLG~~v~~~l~~-~~~g~~l~~g  253 (267)
T TIGR03416       220 SMVVIAALVGAD----GLGVPVVRALNT-VNIALGFEAG  253 (267)
T ss_pred             HHHHHHHHHCCC----CCHHHHHHHHHH-CCHHHHHHHH
T ss_conf             999999996788----536999999863-3568899999