HHsearch alignment for GI: 255764501 and conserved domain: TIGR03416
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=99.74 E-value=8.1e-17 Score=106.19 Aligned_cols=178 Identities=15% Similarity=0.246 Sum_probs=133.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 38354799999999999976566521111221000221156512679999999746553237667664301234677566
Q gi|255764501|r 324 QQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTS 403 (535)
Q Consensus 324 ~~~~~~~a~~~Sl~~s~~~~~i~~~l~l~~a~~~~~~~~~~~~~~~~~~~~~~~lp~~iP~iv~~~~~~~~~~~~~~~~~ 403 (535)
T Consensus 80 ~~~G~W~~am~Tlalv~~av~la~~iGiPlGI~~~~s-----~~~~~~l~pild~mQTiP~fvyLip~i~lfG------- 147 (267)
T TIGR03416 80 INQGYWEETVETLALVLSATVVCMVIGVPLGIAAAHR-----PWLYAIMRPVLDLMQTLPTFVYLIPALVLFG------- 147 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-------
T ss_conf 9871589999999999999999999999999999816-----9999999999987431546799999999948-------
Q ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 55344310246521215699999989728977899999739787699999999954689999999999998511011678
Q gi|255764501|r 404 SSYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIAL 483 (535)
Q Consensus 404 ~~~~~iila~~~~~lP~~~~~l~~~l~~i~~~l~eaA~~lGa~~~~~f~~I~lPll~p~i~~~~~l~f~~s~~e~~~~~l 483 (535)
T Consensus 148 iG~~~aiia~~iya~~P~ir~T~~Gir~V~~~~iEaa~~~G~s~~q~l~~V~lPlA~P~Il~G~nq~i~~al~mvviaa~ 227 (267)
T TIGR03416 148 LGMVPGLISTVIFAIPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQTIMLSLSMVVIAAL 227 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87056999999999889999999999856768999999839989889799418415899999999999999999999999
Q ss_pred ECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 648983028989998861798136999999999
Q gi|255764501|r 484 FGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLL 516 (535)
Q Consensus 484 l~~~~~~Tl~~~i~~~~~~~~~~~a~a~a~il~ 516 (535)
T Consensus 228 IGa~G---LG~~v~~~l~~~~~g~~l~~gi~iv 257 (267)
T TIGR03416 228 VGADG---LGVPVVRALNTVNIALGFEAGLAIV 257 (267)
T ss_pred HCCCC---CHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 67885---3699999986335688999999999