HHsearch alignment for GI: 255764501 and conserved domain: pfam00528
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component. The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Probab=99.70 E-value=6.8e-16 Score=101.28 Aligned_cols=135 Identities=22% Similarity=0.182 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999707996179999999999988999999999999722785421033158887643332699999999987
Q gi|255764501|r 71 VIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFN 150 (535)
Q Consensus 71 ~~ig~~~A~~~~~~~~~~~~~~~~~~~lp~~~P~~v~~~~~~~~~~~~G~~~~~l~~~g~~~~~~~~~~~~iii~~~~~~ 150 (535)
T Consensus 2 v~lG~~~a~---~~~~~~d~~~~~~~~~~~~iP~~~l~~~l~~~~~~~~---------------~~~~~~~~i~~~~~~~ 63 (183)
T pfam00528 2 IPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSI---------------LGHGILPAIILALLGW 63 (183)
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_conf 869999995---0785899999999999998349999999999984236---------------6789999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCC
Q ss_conf 6654899999985088899999986214714677544200166402457778777652584156640366554
Q gi|255764501|r 151 MPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPAS 223 (535)
Q Consensus 151 ~p~~~l~~~~~l~~i~~~~~eaA~~lGas~~~~f~~v~lP~~~p~i~~~~~l~f~~~~~~f~~~~~lgg~~~~ 223 (535)
T Consensus 64 ~~~~~~~~~~~l~~~~~~~v~aA~~~G~s~~~i~~~~~lP~~~p~ii~~~~~~~~~~~~~~~~~e~l~~~~Gl 136 (183)
T pfam00528 64 AGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL 136 (183)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999997068999999998699843412992189899999999999999999999999999368967