RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764501|ref|YP_003064973.2| thiamine transporter membrane
protein [Candidatus Liberibacter asiaticus str. psy62]
(535 letters)
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 290 bits (743), Expect = 8e-79
Identities = 167/532 (31%), Positives = 255/532 (47%), Gaps = 16/532 (3%)
Query: 13 LWPGVIISCFLNFIFFLVVYSLWRHMP--LISWREFMEDSYLWHVIGFTFWQALLSTLLS 70
L ++++ F+ V + + + D YLW V+ T A+L TLLS
Sbjct: 13 LLLALLVALFVALPLLAVFAAALSLGGGAFDALAAVLSDPYLWRVLANTLILAVLVTLLS 72
Query: 71 VIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGI 130
V+ I LA L R FPGR L L + V+P FVV + +++G +G +A L + LG
Sbjct: 73 VVLGIPLAWLLSRYDFPGRRLLRWLLALPLVIPPFVVALAWISLFGPSGPLAALLELLGF 132
Query: 131 VYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWP 190
++YG+ GILL VFFN PLA ++L AL++I + A LG + W FR V P
Sbjct: 133 ESP-SIYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLP 191
Query: 191 YLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQ 250
LR I + L+FMLC A F T L LGGG TT+E AIYQ++ FDL +AA L+L+
Sbjct: 192 LLRPAIAAGALLVFMLCLADFGTPLILGGG--YTTLETAIYQAIMSSFDLARAALLALLL 249
Query: 251 IFCCLSLVLFNQKFNVSFSSGYSSRFLWKNE-DDSRWSRWWDFFLISCAIWFFILPLLAI 309
+ +L+L ++ + S + + R R LI ++ +LPLLA+
Sbjct: 250 LLITAALLLLERRLRRAKQKSTLSGKGSRPKQRLGRLRRLLGAALIVLLLFLILLPLLAV 309
Query: 310 IIEG---MNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLK 366
++ + L +L W + NS+ +A+ A +L ++ ++L + R LR R
Sbjct: 310 VLPSFVLNWGRPLSLVLASPQFWQALLNSLLLALAAALLAVVLALLLAYAVRRLRSR--- 366
Query: 367 FFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYS---LIIVTNALMAVPYAVK 423
+ + E +L LAVP +VLA+G LL + L ++++ AL +P+AV+
Sbjct: 367 -LSRLLERLSMLPLAVPGVVLALGLLLLFRAPDGLLYQPLYTLLILVLAYALRFLPFAVR 425
Query: 424 ILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIAL 483
L + + SL G+ R I L+ + + LSIG+ L
Sbjct: 426 SLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLL 485
Query: 484 FGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD 535
G+ TL Y+Y L R DA AL+LL + L LF LL+ L
Sbjct: 486 LGSPGTRTLTVYIYNLLSDGRYGDAAALALILLVVSLLLFLLLDRLGEGLRR 537
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease
component [Posttranslational modification, protein
turnover, chaperones].
Length = 274
Score = 92.9 bits (231), Expect = 2e-19
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 10/254 (3%)
Query: 12 ALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFME---DSYLWHVIGFTFWQALLSTL 68
L G+ + L + + + + W F + + T A +TL
Sbjct: 13 GLLLGLTLLFLLLILLLPLSALVT-KSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATL 71
Query: 69 LSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWL 128
L+++ + LA L R FPG+ L L + F LP V + + ++G G + L L
Sbjct: 72 LNLVFGLPLAWVLVRYDFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPL 131
Query: 129 GIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVE 188
GI + F G+++ F ++P +R + L+ I E + A LG +P FR V
Sbjct: 132 GIKFAFTP---LGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGASPLQTFRRVI 188
Query: 189 WPYLRRQILPTSSLIFMLCFASFATVLTLGGGPA--STTIELAIYQSLSYDFDLNKAAFL 246
P L +L L F F VL + G + T+ L IY L +DL AA +
Sbjct: 189 LPLLLPALLAGFILSFARSIGEFGAVLIIAGNTPYKTETLPLLIYTRLES-YDLEAAAAI 247
Query: 247 SLVQIFCCLSLVLF 260
S+V + L+L
Sbjct: 248 SVVLLLISFILLLV 261
Score = 59.1 bits (143), Expect = 3e-09
Identities = 48/270 (17%), Positives = 98/270 (36%), Gaps = 19/270 (7%)
Query: 278 WKNEDDSRWSRWWDFFLISCAIWFFILPLLAIIIE--GMNAKLLLRLLQQSGLWSSFFNS 335
K + + +LPL A++ + + L + ++ +
Sbjct: 3 RKRSRVIPGFGLLLGLTLLFLLLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLT 62
Query: 336 IYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLL 395
+ A A +L ++F + L W + + + +L A+P+ V + LL
Sbjct: 63 LLTAFAATLLNLVFGLPLAWVLVRYDFPGKRLVDALVDLP----FALPTAVAGIALLLLF 118
Query: 396 KNTVNLTSSSYSL----------IIVTNALMAVPYAVKILENPMYDLAERYNALCISLQI 445
L S L +IV +++P+ V+ ++ + ++ Y SL
Sbjct: 119 GPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEIDREYEEAARSLGA 178
Query: 446 KGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFC---TLPCYLYQQLGS 502
+ + L + F S SIG+FG + + + TLP +Y +L S
Sbjct: 179 SPLQTFRRVILPLLLPALLAGFILSFARSIGEFGAVLIIAGNTPYKTETLPLLIYTRLES 238
Query: 503 YRQSDAVVTALLLLSLCLGLFSLLEYLSGK 532
Y A +++LL + L ++ L +
Sbjct: 239 YDLEAAAAISVVLLLISFILLLVIRLLQSR 268
>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system,
permease component I [Amino acid transport and
metabolism].
Length = 287
Score = 82.6 bits (204), Expect = 2e-16
Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 3/255 (1%)
Query: 12 ALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTFWQALLSTLLSV 71
L P +I+ + L + L ++ + DS V+ + W A L TL+ +
Sbjct: 24 FLLPLLIVLVPSFLLPLLSFFDYSGVFTLGNYARLLTDSLYLTVLLRSLWIAALVTLICL 83
Query: 72 IPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIV 131
+ +A L R R L L L + F + + + GR G I Q LG++
Sbjct: 84 LLGYPVAYFLARSPPRWRNLLLLLVILPFWTSLLIRTYAWIVILGRNGLINQALLALGLI 143
Query: 132 YQFN--LYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEW 189
+ LY +++ V+ +P I L AL+ I + A LG +P+ FR V
Sbjct: 144 DEPLRLLYTETAVIIGMVYIYLPFMILPLYAALEKIDPSLLEAARDLGASPFQTFRRVIL 203
Query: 190 PYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLV 249
P I+ S L+F+ SF T L GGP I IYQ + A+ L++V
Sbjct: 204 PLSLPGIIAGSLLVFIPALGSFVTPALL-GGPKVLMIGNLIYQQFLSARNWPFASALAVV 262
Query: 250 QIFCCLSLVLFNQKF 264
+ L L+L F
Sbjct: 263 LLLVVLLLLLLYLLF 277
>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 225
Score = 81.0 bits (200), Expect = 8e-16
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 7/220 (3%)
Query: 49 DSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVI 108
+ + AL+STLL + I LA L RR F G+ L L + VLP V+
Sbjct: 2 TPEELTALLLSLKVALISTLLLLPLGIALAYLLARRRFRGKSLLESLVLLPLVLPPVVLG 61
Query: 109 MGVFTVYGRTGWIAQ-LCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISI 167
+ ++GR G+I Q L W G+ F+ +G +L V ++PL +R L A ++I
Sbjct: 62 FLLLVLFGRNGFIGQFLEDWFGLSLAFSW---QGAVLASVVVSLPLMVRPLRLAFEAIDR 118
Query: 168 EQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGG-PAST-T 225
E + A LG + W F + P IL L F F L G P T T
Sbjct: 119 ELEEAARTLGASRWEVFFRITLPLALPGILAGVILSFARALGEFGATLMFAGNIPGETQT 178
Query: 226 IELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFNQKFN 265
+ LAIY ++ + A L L+ + L ++ ++
Sbjct: 179 LPLAIYTAVQAG-NYALAHRLVLILVVISLLVLFVSEWLA 217
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic
Binding Protein (PBP)-dependent ATP-Binding Cassette
(ABC) transporters which generally bind type 2 PBPs.
These types of transporters consist of a PBP, two TMs,
and two cytoplasmic ABC ATPase subunits, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. For these transporters the ABCs and TMs are on
independent polypeptide chains. These systems transport
a diverse range of substrates. Most are specific for a
single substrate or a group of related substrates;
however some transporters are more promiscuous,
transporting structurally diverse substrates such as the
histidine/lysine and arginine transporter in
Enterobacteriaceae. In the latter case, this is achieved
through binding different PBPs with different
specificities to the TMs. For other promiscuous
transporters such as the multiple-sugar transporter Msm
of Streptococcus mutans, the PBP has a wide substrate
specificity. These transporters include the
maltose-maltodextrin, phosphate and sulfate
transporters, among others..
Length = 190
Score = 75.0 bits (185), Expect = 5e-14
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 12/201 (5%)
Query: 56 IGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVY 115
+ T AL++TLL+++ + L L R+ L R+ ++ LP V+ + + ++
Sbjct: 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLF 60
Query: 116 GRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQ 175
G G+ ++L + P A + AL+SI + + A
Sbjct: 61 GVLLGW----------GILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARA 109
Query: 176 LGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPAST-TIELAIYQSL 234
LG +PW FR + P IL L F FA V LGGG A L + ++
Sbjct: 110 LGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAI 169
Query: 235 SYDFDLNKAAFLSLVQIFCCL 255
+ DL AA ++L+ + L
Sbjct: 170 LFPGDLGVAAAVALILLLLSL 190
Score = 45.7 bits (109), Expect = 3e-05
Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 6/191 (3%)
Query: 332 FFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVGF 391
N++ +A+ A +L ++ ++L R + + I +L +L++PS+VL +
Sbjct: 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDL----LLSLPSLVLGLLL 56
Query: 392 FLLLKNTVNLTSSSYS--LIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGIN 449
LL + ++ L+ P+A I + + + +L
Sbjct: 57 VLLFGVLLGWGILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQ 116
Query: 450 RLYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAV 509
I + + ++G+F +++ G L D
Sbjct: 117 IFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGLLLIFAILFPGDLG 176
Query: 510 VTALLLLSLCL 520
V A + L L L
Sbjct: 177 VAAAVALILLL 187
>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional.
Length = 237
Score = 73.9 bits (182), Expect = 1e-13
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 9/208 (4%)
Query: 17 VIISCF-LNFIFFLVVYSLWRHMPLISWREF----MEDSYLWHVIGFTFWQALLSTLLSV 71
IIS + F+ L + +L W +F E L T AL++ L++
Sbjct: 14 YIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALS-AYSLTLSMALIAALING 72
Query: 72 IPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIV 131
+ +A L R +FPG+ L + F LP V + + TVYG GWI L LGI
Sbjct: 73 FFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQ 132
Query: 132 YQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPY 191
F G+LL +F + P +R + L I E + A LG +PW F V +P
Sbjct: 133 IVFTK---LGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPP 189
Query: 192 LRRQILPTSSLIFMLCFASFATVLTLGG 219
L +L +L F + +++ +
Sbjct: 190 LIPALLTGLALTFSRAIGEYGSIVIISS 217
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 67.5 bits (165), Expect = 9e-12
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 16/217 (7%)
Query: 43 WREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVL 102
+ D L + + ALLS LL+ + A +L R F G+ L L + V+
Sbjct: 54 YGALFSDPRLLSALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVV 113
Query: 103 PVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQAL 162
P V + + ++ G G I+L H+ F +P + ++ L
Sbjct: 114 PDIVTGIALLLLFAALGLP---------------GGFWTIVLAHIVFALPFVVVVVSARL 158
Query: 163 DSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPA 222
+ A LG +PW FR V P + IL + L F L F F + GP
Sbjct: 159 QGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEF-VITFFLAGPG 217
Query: 223 STTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVL 259
TT+ L IY + A +L+ + L ++L
Sbjct: 218 FTTLPLQIYSMIRRGITPEINALSTLLLLLSLLLILL 254
Score = 58.3 bits (141), Expect = 5e-09
Identities = 50/262 (19%), Positives = 89/262 (33%), Gaps = 19/262 (7%)
Query: 284 SRWSRWWDFFLISCAIWFFILPLLAIIIEGMNA-------------KLLLRLLQQSGLWS 330
W+R + ++ + F LPLL +++ N+ K L L S
Sbjct: 6 RIWARIFLKLYLALVLLFLYLPLLVLVLYSFNSSRLGLVFPPGFSLKWYGALFSDPRLLS 65
Query: 331 SFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVPSIVLAVG 390
+ +NS+ IA+ + +L + + R R + LL L VP IV +
Sbjct: 66 ALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLI----LLPLVVPDIVTGIA 121
Query: 391 FFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDLAERYNALCISLQIKGINR 450
LL + I++ + + A+P+ V ++ + L
Sbjct: 122 LLLLF--AALGLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQT 179
Query: 451 LYLIEFKALKRLMAQTFSFSCLLSIGDFGIIALFGNDNFCTLPCYLYQQLGSYRQSDAVV 510
+ + + + LS +F I F TLP +Y + +
Sbjct: 180 FRRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGPGFTTLPLQIYSMIRRGITPEINA 239
Query: 511 TALLLLSLCLGLFSLLEYLSGK 532
+ LLL L L L L L +
Sbjct: 240 LSTLLLLLSLLLILLASRLLRR 261
>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease
components [Carbohydrate transport and metabolism].
Length = 295
Score = 66.0 bits (161), Expect = 2e-11
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 10/231 (4%)
Query: 43 WREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVL 102
+ D W+ + T ++S L ++ + LA L R GR F L + + +
Sbjct: 57 YERLFSDPTFWNALKNTLVFTVISVPLQLVLGLLLA-LLLNRKLRGRGFFRTLFFLPWAI 115
Query: 103 PVFVV-IMGVFTVYGRTGWIAQLCQWLGIVYQFNLYG-----IKGILLVHVFFNMPLAIR 156
V ++ + G + L LG++ N + +++V V+ +
Sbjct: 116 SSVVAGLIWKWLFNPSFGLLNSLLLLLGLIPDINWLSDPNTALFAVIIVSVWKGTGFVML 175
Query: 157 MLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLT 216
+ L L SI E + A G +PW FR + P LR I L + F F +
Sbjct: 176 LFLAGLQSIPKELYEAARIDGASPWQRFRKITLPLLRPVIFFVLILRTIFAFQVFDLIYL 235
Query: 217 L-GGGP--ASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFNQKF 264
L GGGP A+TT+ IY++ D AA ++++ L L + +
Sbjct: 236 LTGGGPGNATTTLAYYIYRTAFGGLDFGYAAAIAVILFLIVLILTVVQLRL 286
>gnl|CDD|33937 COG4208, CysW, ABC-type sulfate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 287
Score = 61.1 bits (148), Expect = 7e-10
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 6/207 (2%)
Query: 53 WHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIF-VLPVFVVIMGV 111
I T AL++ L+V+ + A ++ R FPG+ L L L + F V PV ++ V
Sbjct: 64 LSAIKLTLLVALIAVPLNVVFGVAAAWAIARFEFPGKALLLTLIDLPFSVSPVVAGLVYV 123
Query: 112 FTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQ 171
++G GW+ + I F + GI+L +F P R L+ + ++ +
Sbjct: 124 L-LFGSNGWLGGWLEAHDIQIIF---AVPGIVLATIFVTCPFVARELIPLMQEQGTDEEE 179
Query: 172 LALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIY 231
AL LG + W F V P +R +L L F V + G T L ++
Sbjct: 180 AALTLGASGWQTFWRVTLPNIRWGLLYGVVLTNARAMGEFGAVSVVSGHIRGETNTLPLH 239
Query: 232 QSLSYDFDLNKAAFLSLVQIFCCLSLV 258
+ Y+ + N + + L+LV
Sbjct: 240 VEILYN-EYNTVGAFAAASLLALLALV 265
>gnl|CDD|33888 COG4132, COG4132, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 282
Score = 60.7 bits (147), Expect = 9e-10
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 23/218 (10%)
Query: 22 FLNFIFFLVVYSLW----------RHMPLISWREFMEDSYL---WHVIGFTFWQALLSTL 68
F+ FI FL+ +LW L + + + L W I +F +LL L
Sbjct: 15 FIFFIMFLIAPTLWLVLGAFQVPAGEFTLANIADLFQPFILQAYWISIKISFASSLLGLL 74
Query: 69 LSVIPSIFLAKSLFRRHFPGRI--LFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQ 126
+ LA +L P I L + + GR G + +
Sbjct: 75 IGF----LLAWALVLGGLPSWIRSFLLTFSGVASNFAGVPLAFAFIATLGRNGLVTVFLK 130
Query: 127 WLG----IVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWY 182
LG FNL G+ + +V+F +PL + +L A D + E R+ A LG W
Sbjct: 131 TLGGFNLYSTGFNLLSFFGLTITYVYFQIPLMVLILTPAFDGLKKEWREAAAILGATGWQ 190
Query: 183 FFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGG 220
++R V P L +L T L+F F ++AT L G
Sbjct: 191 YWRMVALPILWPSLLGTFVLLFANAFGAYATAYALTGS 228
>gnl|CDD|30744 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 59.8 bits (145), Expect = 2e-09
Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 17/224 (7%)
Query: 46 FMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVF 105
F + A+ ST+LS++ S A +L R F GR L L + +LP
Sbjct: 65 FSGGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLLLLTLMLPAQ 124
Query: 106 VVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSI 165
V+++ ++ + + G + G++L ++ F +P AI +L Q +I
Sbjct: 125 VLLIPLYLLMRKLGLLNTY---------------WGLILPYLAFGLPFAIFLLRQFFRTI 169
Query: 166 SIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTT 225
E + A G + + F + P + + + F+ + F L L P T
Sbjct: 170 PKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNEFLWPLILLSSPNLLT 229
Query: 226 --IELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFNQKFNVS 267
+ L + D +++ I L + LF Q++ V
Sbjct: 230 LPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRYFVR 273
Score = 35.9 bits (83), Expect = 0.030
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 324 QQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKRELRLRRLKFFNHIFELSELLILAVP 383
G F NS+ +A+ + VL ++ + + + R + K + LL L +P
Sbjct: 67 GGPGFLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRFKGRKLLFLLL----LLTLMLP 122
Query: 384 SIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPYAVKILENPMYDL 432
+ VL + +LL++ + L ++Y +I+ +P+A+ +L +
Sbjct: 123 AQVLLIPLYLLMRK-LGLL-NTYWGLILPYLAFGLPFAIFLLRQFFRTI 169
>gnl|CDD|34280 COG4662, TupA, ABC-type tungstate transport system, periplasmic
component [Coenzyme metabolism].
Length = 227
Score = 51.4 bits (123), Expect = 6e-07
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 13/217 (5%)
Query: 46 FMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVF 105
F D L ++ T + +L+S L+ + + LA L R F G+ + + +P
Sbjct: 15 FSLDPELIGIVATTLYVSLISIFLAALVGVPLAFVLALREFRGKRFIKMIINTLLSMPTV 74
Query: 106 VVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSI 165
+V + ++ + R+G + W + L+ ++L +PL I +L AL+S+
Sbjct: 75 LVGLLLYLLLSRSGPLG----WFNL-----LFTQDAMILGQAILILPLVIAFVLTALESV 125
Query: 166 SIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTT 225
++LA LG +P V R ++ + F A + +GG T
Sbjct: 126 DPRLKELARSLGASPLKLASTVFRE-ARFGLMAAVAAGFGRAVAEVGVAMMVGGNIRGRT 184
Query: 226 --IELAI-YQSLSYDFDLNKAAFLSLVQIFCCLSLVL 259
I AI ++ +F A + L+ I L+ VL
Sbjct: 185 RVITTAISLETNKGNFAQGIALGIVLLAIALALNFVL 221
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system
inner membrane component. The alignments cover the most
conserved region of the proteins, which is thought to be
located in a cytoplasmic loop between two transmembrane
domains. The members of this family have a variable
number of transmembrane helices.
Length = 183
Score = 44.6 bits (106), Expect = 7e-05
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 15/184 (8%)
Query: 82 FRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKG 141
RR L L ++ LP FV+ + + + + +GI
Sbjct: 10 LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVISILSILG---------------HGILP 54
Query: 142 ILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSS 201
+++ + A + AL S+ + + A LG + W FR + P IL +
Sbjct: 55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLA 114
Query: 202 LIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFLSLVQIFCCLSLVLFN 261
L F + LG P + + Y +L+ + L + +
Sbjct: 115 LAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQ 174
Query: 262 QKFN 265
+ +
Sbjct: 175 RLLD 178
>gnl|CDD|33891 COG4135, COG4135, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 551
Score = 41.9 bits (98), Expect = 4e-04
Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 27/254 (10%)
Query: 12 ALWPGVIISCFLNFIFFLVVYSLWR---HMPLISWREFMEDSY--LWHVIGFTFWQALLS 66
L P + ++ FL V LW +P S +S AL +
Sbjct: 301 PLLPTITLAAFLPLTSIWSVALLWIFPDALPGQSTPNTWINSLPEALINSLTMVLLALSA 360
Query: 67 TLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQ 126
+ L+++ I L P R + +LP ++ G + W+
Sbjct: 361 SSLALLLLILW---LEWGGIPQRRQAYLWLWLPILLPALSLVFGQQVL---ALWLGLDGS 414
Query: 127 WLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRF 186
W +V+ H+ F MP + +L I ++A LG + F +
Sbjct: 415 WTAVVW------------GHLLFVMPWVLLILSPPWQRIDSRFIKIAQTLGKSRAKIFFY 462
Query: 187 VEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNKAAFL 246
V+ P L R L ++ F + A + L LG G +T A+ +LS D A
Sbjct: 463 VKLPLLFRACLIAFAVGFSVSIAQYLPTLWLGAGRLTTITTEAV--ALSSGGDRRVLAIY 520
Query: 247 SLVQIFCCLSLVLF 260
+L Q+ L ++F
Sbjct: 521 ALWQLL--LPFIIF 532
>gnl|CDD|37069 KOG1858, KOG1858, KOG1858, Anaphase-promoting complex (APC),
subunit 1 (meiotic check point regulator/Tsg24) [Cell
cycle control, cell division, chromosome partitioning,
Posttranslational modification, protein turnover,
chaperones].
Length = 1496
Score = 33.4 bits (76), Expect = 0.16
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 233 SLSYDFDLNKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSS--RFLWKNEDDSRWSRWW 290
L + F SL IF L L+ K + S L + +W +
Sbjct: 467 PLEVELHPCYDMFQSLSMIFITLHLIYEELKLDTLMKPRLPSLAELLLQLAKVMKWPAYV 526
Query: 291 DFFLISCAIWFFILPLL 307
++++ F + L
Sbjct: 527 EYYIRDFPELFLTIGLE 543
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease
component [Inorganic ion transport and metabolism].
Length = 292
Score = 33.2 bits (76), Expect = 0.17
Identities = 46/256 (17%), Positives = 83/256 (32%), Gaps = 31/256 (12%)
Query: 23 LNFIFFLVVYSLWRHMPLI--SWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKS 80
L I + +L ++ S E + I T + LL+ L+ V I
Sbjct: 38 LWTILIRGIPALSLNLEFFTGSPSPPGEGGGIGPAIVGTLYLILLAILIGVPLGIGAG-- 95
Query: 81 LFRRHFPGRILFLRL-HTMIFVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGI 139
++ + + ++ I +L I V+ ++G ++ L F +
Sbjct: 96 IYLAEYAKKSRLTKVIRFAIDILASVPSI--VYGLFGLGFFVVTL--------GFGFSAL 145
Query: 140 KGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEWPYLRRQIL-- 197
G L +P+ IR +AL ++ R+ A LG W V P I+
Sbjct: 146 AGAL-ALALLMLPVVIRTTEEALRAVPDSLREAAYALGATKWQTIFKVVLPAALPGIITG 204
Query: 198 ----------PTSSLIFMLCFASFATVLTLGGGPASTTIELAIY---QSLSYDFDLNKAA 244
T+ L+F ++ + + + IY S A
Sbjct: 205 VILAIARAAGETAPLLFTAGMSANSPSWPTDLLTPVAALPVHIYMLATSGPSPEAQELAW 264
Query: 245 FLSLVQIFCCLSLVLF 260
+LV + L L L
Sbjct: 265 GAALVLLLIVLLLNLL 280
>gnl|CDD|33626 COG3833, MalG, ABC-type maltose transport systems, permease
component [Carbohydrate transport and metabolism].
Length = 282
Score = 32.4 bits (74), Expect = 0.29
Identities = 40/227 (17%), Positives = 81/227 (35%), Gaps = 23/227 (10%)
Query: 46 FMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVF 105
+ + AL++ ++V A + R F GR L+ ++ + P
Sbjct: 65 TGPPFPYLLWLWNSLIVALITAAITVALVTLAAYAFSRYRFKGRKYLLKFFLILQMFPGV 124
Query: 106 VVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSI 165
++ ++ + G + L G++L ++ +P+ ++ D+I
Sbjct: 125 AALIALYVLLKLLGLLNTL---------------WGLILAYLGGAIPMNTWLIKGYFDTI 169
Query: 166 SIEQRQLALQLGMNPWYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTT 225
+ A G + FR + P + + + L F+ F F L P + T
Sbjct: 170 PKSLDEAAKIDGATRFQIFRRILLPLSKPILAVVALLAFIGPFGDFILASLLLRDPENYT 229
Query: 226 IELAIYQSLSYDFDLN-----KAAFLSLVQIFCCLSLVLFNQKFNVS 267
+ + + L+ + N A L + I L L QK+ VS
Sbjct: 230 LAVGLQSFLNGPQNTNWGLFAAGAVLIALPIT---ILFLVLQKYLVS 273
>gnl|CDD|33942 COG4215, ArtQ, ABC-type arginine transport system, permease
component [Amino acid transport and metabolism].
Length = 230
Score = 31.3 bits (71), Expect = 0.73
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 63 ALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTG--- 119
A+ S +L ++ + A ++ R+L T+I +P ++I+ ++ +G
Sbjct: 21 AVCSLILGLLLGLLGALGKLSKNRLLRLLGNVYTTVIRGVPELLLILLIY--FGGQILLN 78
Query: 120 WIAQLCQWLGIVY-QFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGM 178
+A + LG+ + + + + G++ + + F A L A ++ Q + A LG+
Sbjct: 79 TLADVTGALGVGFIDISPF-VAGVIALGLIFG-AYATETLRGAFKAVPKGQIEAARALGL 136
Query: 179 NPWYFFRFVEWPYLRRQILP 198
+ FR + P + R LP
Sbjct: 137 SRSQTFRRIVLPQMWRHALP 156
>gnl|CDD|38723 KOG3514, KOG3514, KOG3514, Neurexin III-alpha [Signal transduction
mechanisms].
Length = 1591
Score = 30.4 bits (68), Expect = 1.4
Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 193 RRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDLNK------AAFL 246
+ PT L+ + S + L G P S S + L
Sbjct: 4 KFDDTPTLLLVLTVSLFSLVDGIILTGAPDSYARYPKWAHSFEGSLSMELKTRQSDGLLL 63
Query: 247 SLVQIFCC--LSLVLFNQKFNVSFSSGYSSRFLWKNE--DDSRW 286
L L + F G S+ F + DD +W
Sbjct: 64 YTDDGGTHDFYELTLVEGHLRLRFRLGNSNEFGQRRVRIDDDKW 107
>gnl|CDD|36402 KOG1188, KOG1188, KOG1188, WD40 repeat protein [General function
prediction only].
Length = 376
Score = 29.6 bits (66), Expect = 2.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 258 VLFNQKFNVSFSSGYSSRF-LWKNEDDSRWSRWWD 291
+LF+ K +V ++ G WK ED + + W
Sbjct: 322 ILFDVKNDVLYTGGEDGLLQAWKVEDATEINFSWT 356
>gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 29.6 bits (66), Expect = 2.6
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 27 FFLVVYSLWRHMPLISW--REFMEDSYLWHV--IGFTFWQALLSTLLSVIPSIFLAKSLF 82
L + L R W + + +W V +GF FWQ + V+ ++L
Sbjct: 40 LLLSAWLLLRRKRAALWLYALVLLGTLVWAVWEVGFDFWQLGPRGGIIVLFGLWLLLPWV 99
Query: 83 RRHF----PGRILFLRLHTMIFV 101
RR PG L L +
Sbjct: 100 RRGLVSPAPGGAAALVLAVLASA 122
>gnl|CDD|35427 KOG0206, KOG0206, KOG0206, P-type ATPase [General function prediction
only].
Length = 1151
Score = 28.7 bits (64), Expect = 4.1
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 20 SCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAK 79
S L F+F + L + + F + +FW LL T+++ + F+ K
Sbjct: 1015 SILLWFVFLFIYSELTPAIS--TPDPFY-GVAEHLLSSPSFWLTLLLTVVAALLPDFVYK 1071
Query: 80 SLFRRHFPGRILFLRLH 96
SL R FP ++
Sbjct: 1072 SLQRTFFPTDHDIIQEI 1088
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease
component [Amino acid transport and metabolism].
Length = 222
Score = 28.5 bits (64), Expect = 4.2
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 51 YLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRIL--FLRLHTMIF-VLPVFVV 107
+L + T LLS +L ++ + LA R + L R + IF P+ V
Sbjct: 17 FLLKGLLVTLLLTLLSIVLGLVLGLLLA---LMRLSGNKPLRWLARAYVEIFRGTPLLVQ 73
Query: 108 IMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISI 167
+ ++ L LGI + + + ++ + S+
Sbjct: 74 LFFIYFG---------LLPLLGIELDPFTAAVIAL----SLNSGAYLAEIVRAGIQSVPK 120
Query: 168 EQRQLALQLGMNPWYFFRFVEWPYLRRQILP--TSSLIFMLCFASFATVLTL 217
Q + A LG+ W R+V P R ILP + I ++ S +V+ +
Sbjct: 121 GQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQFISLIKDTSLVSVIGV 172
>gnl|CDD|39700 KOG4500, KOG4500, KOG4500, Rho/Rac GTPase guanine nucleotide
exchange factor smgGDS/Vimar [Signal transduction
mechanisms].
Length = 604
Score = 28.5 bits (63), Expect = 4.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 151 MPLAIRMLLQALDSISIEQRQLALQLGMNPWYFFRFVEW 189
P LL L I Q +A +L NP F + V+W
Sbjct: 415 SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW 453
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport
system, permease component [Inorganic ion transport and
metabolism].
Length = 258
Score = 27.9 bits (62), Expect = 6.6
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 21/151 (13%)
Query: 40 LISWREFMEDSYLWHVIGFTFWQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMI 99
L + E + L+ + + + LL L+ + I L L L L ++
Sbjct: 47 LAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLG-ILMGLSRLLERLLDPLVQVL 105
Query: 100 FVLPVFVVIMGVFTVYGRTGWIAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLL 159
+P W GI G +++ V + L
Sbjct: 106 RPIPPLA-------------LAPLAILWFGI-------GETSKIVIAVLGAFFPILINTL 145
Query: 160 QALDSISIEQRQLALQLGMNPWYFFRFVEWP 190
+ S+ + +LA LG + W R V P
Sbjct: 146 DGVRSVDPDLLELARTLGASRWQILRKVILP 176
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.334 0.145 0.465
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,976,069
Number of extensions: 408727
Number of successful extensions: 2624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2545
Number of HSP's successfully gapped: 239
Length of query: 535
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 437
Effective length of database: 4,146,055
Effective search space: 1811826035
Effective search space used: 1811826035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 60 (26.9 bits)