BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter asiaticus str. psy62] (535 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 535 Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/535 (100%), Positives = 535/535 (100%) Query: 1 MAKCCQPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTF 60 MAKCCQPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTF Sbjct: 1 MAKCCQPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTF 60 Query: 61 WQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW 120 WQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW Sbjct: 61 WQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW 120 Query: 121 IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP 180 IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP Sbjct: 121 IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP 180 Query: 181 WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDL 240 WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDL Sbjct: 181 WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDL 240 Query: 241 NKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIW 300 NKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIW Sbjct: 241 NKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIW 300 Query: 301 FFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKREL 360 FFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKREL Sbjct: 301 FFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKREL 360 Query: 361 RLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPY 420 RLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPY Sbjct: 361 RLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPY 420 Query: 421 AVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGI 480 AVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGI Sbjct: 421 AVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGI 480 Query: 481 IALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD 535 IALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD Sbjct: 481 IALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD 535 >gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 25.0 bits (53), Expect = 3.4, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 419 PYAVKILENPMYDLAERYNALCISLQIKGINRLY 452 P +ILENP L + +L L+++G+ Y Sbjct: 69 PKGKEILENPKASLCFHWKSLARQLRVRGLVEKY 102 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.334 0.145 0.465 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 329,892 Number of Sequences: 1233 Number of extensions: 13322 Number of successful extensions: 66 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 63 Number of HSP's gapped (non-prelim): 6 length of query: 535 length of database: 328,796 effective HSP length: 78 effective length of query: 457 effective length of database: 232,622 effective search space: 106308254 effective search space used: 106308254 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 41 (20.4 bits)