BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764501|ref|YP_003064973.2| thiamine transporter membrane
protein [Candidatus Liberibacter asiaticus str. psy62]
         (535 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 535

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/535 (100%), Positives = 535/535 (100%)

Query: 1   MAKCCQPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTF 60
           MAKCCQPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTF
Sbjct: 1   MAKCCQPSIRNALWPGVIISCFLNFIFFLVVYSLWRHMPLISWREFMEDSYLWHVIGFTF 60

Query: 61  WQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW 120
           WQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW
Sbjct: 61  WQALLSTLLSVIPSIFLAKSLFRRHFPGRILFLRLHTMIFVLPVFVVIMGVFTVYGRTGW 120

Query: 121 IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP 180
           IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP
Sbjct: 121 IAQLCQWLGIVYQFNLYGIKGILLVHVFFNMPLAIRMLLQALDSISIEQRQLALQLGMNP 180

Query: 181 WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDL 240
           WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDL
Sbjct: 181 WYFFRFVEWPYLRRQILPTSSLIFMLCFASFATVLTLGGGPASTTIELAIYQSLSYDFDL 240

Query: 241 NKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIW 300
           NKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIW
Sbjct: 241 NKAAFLSLVQIFCCLSLVLFNQKFNVSFSSGYSSRFLWKNEDDSRWSRWWDFFLISCAIW 300

Query: 301 FFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKREL 360
           FFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKREL
Sbjct: 301 FFILPLLAIIIEGMNAKLLLRLLQQSGLWSSFFNSIYIAINAGVLCMIFTIMLLWTKREL 360

Query: 361 RLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPY 420
           RLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPY
Sbjct: 361 RLRRLKFFNHIFELSELLILAVPSIVLAVGFFLLLKNTVNLTSSSYSLIIVTNALMAVPY 420

Query: 421 AVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGI 480
           AVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGI
Sbjct: 421 AVKILENPMYDLAERYNALCISLQIKGINRLYLIEFKALKRLMAQTFSFSCLLSIGDFGI 480

Query: 481 IALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD 535
           IALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD
Sbjct: 481 IALFGNDNFCTLPCYLYQQLGSYRQSDAVVTALLLLSLCLGLFSLLEYLSGKEYD 535


>gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 201

 Score = 25.0 bits (53), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 419 PYAVKILENPMYDLAERYNALCISLQIKGINRLY 452
           P   +ILENP   L   + +L   L+++G+   Y
Sbjct: 69  PKGKEILENPKASLCFHWKSLARQLRVRGLVEKY 102


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.145    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,892
Number of Sequences: 1233
Number of extensions: 13322
Number of successful extensions: 66
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 6
length of query: 535
length of database: 328,796
effective HSP length: 78
effective length of query: 457
effective length of database: 232,622
effective search space: 106308254
effective search space used: 106308254
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 41 (20.4 bits)