RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764502|ref|YP_003064963.2| hypothetical protein
CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
(100 letters)
>gnl|CDD|31189 COG0848, ExbD, Biopolymer transport protein [Intracellular
trafficking and secretion].
Length = 137
Score = 28.3 bits (63), Expect = 0.53
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 28 GRMNSELQSTSLVGLVLVLFIILIGTVMVLIPKAEFIL------GLDIKRYPIMIDVKRD 81
SE+ T L+ ++LVL II + T + + L + PI++ V D
Sbjct: 10 DEEKSEINVTPLIDVMLVLLIIFMVTAPFITQSIKVDLPKASAKPAPQDKKPIIVSVDAD 69
Query: 82 GEIRVQGQQVLLNEITKKI 100
G+I + + V L E+ +
Sbjct: 70 GQIYLNDKPVSLEELEAAL 88
>gnl|CDD|145552 pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This
group of proteins are membrane bound transport proteins
essential for ferric ion uptake in bacteria. The Pfam
family consists of ExbD, and TolR which are involved in
TonB-dependent transport of various receptor bound
substrates including colicins.
Length = 128
Score = 28.0 bits (63), Expect = 0.58
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 27 DGRMNSELQSTSLVGLVLVLFII-LIGTVMVLIPKAEFIL------GLDIKRYPIMIDVK 79
E+ T L+ +V +L I ++ + + L ++ ++I V
Sbjct: 1 RKEEEPEINLTPLIDVVFLLLIFFMVTATFIKESVLKVELPSASSTAPVEEKEELIISVD 60
Query: 80 RDGEIRVQGQQVLLNEITKKI 100
DG+I + G+ V L E+ K+
Sbjct: 61 ADGKIYLDGEPVDLEELEAKL 81
>gnl|CDD|153329 cd07645, I-BAR_IMD_BAIAP2L1, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Brain-specific
Angiogenesis Inhibitor 1-Associated Protein 2-Like 1.
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs
(I-BAR) domain, is a dimerization and lipid-binding
module that bends membranes and induces membrane
protrusions. BAIAP2L1 (Brain-specific Angiogenesis
Inhibitor 1-Associated Protein 2-Like 1) is also known
as IRTKS (Insulin Receptor Tyrosine Kinase Substrate).
It is widely expressed, serves as a substrate for the
insulin receptor, and binds the small GTPase Rac. It
plays a role in regulating the actin cytoskeleton and
colocalizes with F-actin, cortactin, VASP, and vinculin.
BAIAP2L1 expression leads to the formation of short
actin bundles, distinct from filopodia-like protrusions
induced by the expression of the related protein IRSp53.
It contains an N-terminal IMD, an SH3 domain, and a WASP
homology 2 (WH2) actin-binding motif at the C-terminus.
The IMD domain of BAIAP2L1 binds and bundles actin
filaments, and binds the small GTPase Rac.
Length = 226
Score = 26.4 bits (58), Expect = 1.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 5 RSQEGIRKIRSRSKGNRNLTILDGRMNSELQSTS 38
+SQ ++KIR +S+G RN + + + N L++ +
Sbjct: 130 KSQADLKKIRRKSQGRRNASKYEHKENEYLETVT 163
>gnl|CDD|30039 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate hydrolase
(Imidazolone-5PH) catalyzes the third step in the
histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon..
Length = 371
Score = 25.6 bits (56), Expect = 2.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 52 GTVMVLIPKAEFILGLDIKRYPIMID 77
GTV VL+P F L +ID
Sbjct: 251 GTVAVLLPGTAFSLRETYPPARKLID 276
>gnl|CDD|37144 KOG1933, KOG1933, KOG1933, Cholesterol transport protein
(Niemann-Pick C disease protein) [Lipid transport and
metabolism].
Length = 1201
Score = 24.9 bits (54), Expect = 4.5
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 21 RNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVMVLIPKAEFILGLD 68
+ L + G + L VG L I ++ +IP +G+D
Sbjct: 581 KVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVD 628
>gnl|CDD|133146 cd05479, RP_DDI, RP_DDI; retropepsin-like domain of DNA damage
inducible protein. The family represents the
retropepsin-like domain of DNA damage inducible protein.
DNA damage inducible protein has a retropepsin-like
domain and an amino-terminal ubiquitin-like domain
and/or a UBA (ubiquitin-associated) domain. This CD
represents the retropepsin-like domain of DDI.
Length = 124
Score = 24.8 bits (55), Expect = 5.3
Identities = 9/21 (42%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 62 EFILGLDI-KRYPIMIDVKRD 81
+F++GLD+ KR+ +ID+K +
Sbjct: 100 DFLIGLDMLKRHQCVIDLKEN 120
>gnl|CDD|37740 KOG2529, KOG2529, KOG2529, Pseudouridine synthase [Translation,
ribosomal structure and biogenesis].
Length = 395
Score = 24.6 bits (53), Expect = 6.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 51 IGTVMVLIPKAEFILGLDIKRYPIMIDVKRDGEIR 85
+ + L K E + G +R P++ VKR +R
Sbjct: 142 VEDALKLHQKLEHLYGALFQRPPLISAVKRVLRVR 176
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.325 0.144 0.380
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,094,556
Number of extensions: 50937
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 18
Length of query: 100
Length of database: 6,263,737
Length adjustment: 68
Effective length of query: 32
Effective length of database: 4,794,325
Effective search space: 153418400
Effective search space used: 153418400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)