RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764502|ref|YP_003064963.2| hypothetical protein
CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
         (100 letters)



>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro,
          putative coronavirus nsp2) {SARS coronavirus [TaxId:
          227859]}
          Length = 300

 Score = 25.2 bits (55), Expect = 1.7
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 17 SKGNRNLTILDGRMNSELQSTSLVGLVLVL 46
           K N +  +  G +   +   S+   +L L
Sbjct: 59 RKSNHSFLVQAGNVQLRVIGHSMQNCLLRL 88


>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
          putative coronavirus nsp2) {Human coronavirus 229E
          [TaxId: 11137]}
          Length = 300

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 17 SKGNRNLTILDGRMNSELQSTSLVGLVLVL 46
               N +I+ G     +   ++ G+ L +
Sbjct: 59 IMRLHNFSIISGTAFLGVVGATMHGVTLKI 88


>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
           putative coronavirus nsp2) {Transmissible
           gastroenteritis virus [TaxId: 11149]}
          Length = 299

 Score = 24.0 bits (52), Expect = 4.0
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 17  SKGNRNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVMVLIPKAEFI 64
           S    N ++    +   + S    G+ LVL    +  V    P+ +F 
Sbjct: 59  SVRLHNFSVSKNNVFLGVVSARYKGVNLVL---KVNQVNPNTPEHKFK 103


>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium
          sp. 92 [TaxId: 197856]}
          Length = 83

 Score = 23.1 bits (50), Expect = 7.1
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 53 TVMVLIPKAEFILGLDIKRYPIMIDVKRDGEIRVQGQQVLLNE 95
           +MV +   +  + L   R+  M+     G   + G+ V L  
Sbjct: 22 RIMVAMNNNDKPMTLPTARFQEMLKGAPSGVDFLSGKTVGLGR 64


>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex
          cytochrome b subunit, FrdC {Wolinella succinogenes
          [TaxId: 844]}
          Length = 254

 Score = 23.0 bits (49), Expect = 7.1
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 38 SLVGLVLVLFII--LIGTVMVLIPKAEF 63
          S  GL L LF+I  +     +L+     
Sbjct: 31 SATGLFLGLFMIGHMFFVSTILLGDNVM 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.380 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,907
Number of extensions: 13269
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 9
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)