BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764502|ref|YP_003064963.2| hypothetical protein
CLIBASIA_02185 [Candidatus Liberibacter asiaticus str. psy62]
         (100 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764502|ref|YP_003064963.2| hypothetical protein CLIBASIA_02185 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 100

 Score =  193 bits (490), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 100/100 (100%), Positives = 100/100 (100%)

Query: 1   MMNIRSQEGIRKIRSRSKGNRNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVMVLIPK 60
           MMNIRSQEGIRKIRSRSKGNRNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVMVLIPK
Sbjct: 1   MMNIRSQEGIRKIRSRSKGNRNLTILDGRMNSELQSTSLVGLVLVLFIILIGTVMVLIPK 60

Query: 61  AEFILGLDIKRYPIMIDVKRDGEIRVQGQQVLLNEITKKI 100
           AEFILGLDIKRYPIMIDVKRDGEIRVQGQQVLLNEITKKI
Sbjct: 61  AEFILGLDIKRYPIMIDVKRDGEIRVQGQQVLLNEITKKI 100


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 963

 Score = 21.2 bits (43), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 12 KIRSRSKGNRNLTILDG 28
          KIR  + G +N T+ DG
Sbjct: 45 KIRESAVGRKNFTLHDG 61


>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 274

 Score = 21.2 bits (43), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 8/38 (21%)

Query: 64  ILGLDIKRYPIMIDV--------KRDGEIRVQGQQVLL 93
           I GLD  RY ++++V        K D  I     +VLL
Sbjct: 95  ITGLDTNRYDVLVNVAITPERQKKYDFSIPYIAHRVLL 132


>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 449

 Score = 21.2 bits (43), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 4   IRSQEGIRKIRSRSKGNRNLTILDGRMNS 32
           I S E I  IR R    + +TI D R+ S
Sbjct: 295 IESGENIADIRVRFSKIKGITISDNRLRS 323


>gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 141

 Score = 20.4 bits (41), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 43  VLVLFIILIGTVMVLI 58
           VLV F IL G V VLI
Sbjct: 93  VLVNFFILAGVVFVLI 108


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.144    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,346
Number of Sequences: 1233
Number of extensions: 1987
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 100
length of database: 328,796
effective HSP length: 61
effective length of query: 39
effective length of database: 253,583
effective search space:  9889737
effective search space used:  9889737
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 32 (16.9 bits)