Query         gi|255764503|ref|YP_003064954.2| hypothetical protein CLIBASIA_02140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 44
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 19:58:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764503.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2ww9_B Protein transport prote  56.2     5.9 0.00025   19.7   2.5   24   13-36     45-68  (80)
  2 2wwb_B SEC61gamma, protein tra  43.2     6.7 0.00028   19.4   1.1   24   13-36     31-54  (68)
  3 3mp7_B Preprotein translocase   35.5      20 0.00083   17.2   2.5   24   13-36     28-51  (61)
  4 1rh5_B Preprotein translocase   29.0      29  0.0012   16.3   2.5   23   13-35     32-54  (74)
  5 1m56_D Cytochrome C oxidase; m  10.9   1E+02  0.0042   13.7   1.8   18    1-18     16-33  (51)
  6 1qle_D Cytochrome AA3, ccytoch   7.8 1.4E+02  0.0058   13.1   2.5   17    1-17      8-24  (43)
  7 1f0z_A THis protein; ubiquitin   5.3      93  0.0039   13.9  -0.4   23    1-23      1-23  (66)
  8 3hw5_A Polymerase acidic prote   3.8 2.5E+02   0.011   11.8   2.3   36    6-41     31-71  (261)
  9 1z96_A DNA-damage, UBA-domain    3.7 1.9E+02   0.008   12.4   0.2   10   17-26      7-16  (40)
 10 2vty_A Protein F1, F1L; BCL-2,   3.5 2.1E+02  0.0087   12.2   0.2   10   33-43    160-169 (182)

No 1  
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=56.22  E-value=5.9  Score=19.68  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             667656899998989711021655
Q gi|255764503|r   13 FEFFKISTLVAVGFLFCPFNGMFT   36 (44)
Q Consensus        13 feffkistlvavgflfcpfngmft   36 (44)
                      -||-||+..+++||+.--|-|.|-
T Consensus        45 kEf~kia~at~iGf~imG~IGf~I   68 (80)
T 2ww9_B           45 KEYTKIVKAVGIGFIAVGIIGYAI   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999899999999999


No 2  
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=43.23  E-value=6.7  Score=19.42  Aligned_cols=24  Identities=42%  Similarity=0.653  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             667656899998989711021655
Q gi|255764503|r   13 FEFFKISTLVAVGFLFCPFNGMFT   36 (44)
Q Consensus        13 feffkistlvavgflfcpfngmft   36 (44)
                      -||-||+..+|+||+.--|-|.|-
T Consensus        31 kEf~ki~~a~~iGf~imG~iGf~v   54 (68)
T 2wwb_B           31 KEFQKIAMATAIGFAIMGFIGFFV   54 (68)
T ss_dssp             HHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998499999999998


No 3  
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=35.54  E-value=20  Score=17.17  Aligned_cols=24  Identities=13%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             667656899998989711021655
Q gi|255764503|r   13 FEFFKISTLVAVGFLFCPFNGMFT   36 (44)
Q Consensus        13 feffkistlvavgflfcpfngmft   36 (44)
                      -||.+++...++||+.--|-|.+-
T Consensus        28 ~Ef~~i~k~~~iG~~i~G~iGf~I   51 (61)
T 3mp7_B           28 ATYKRAAKITGLGIILIGLIGMLI   51 (61)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999


No 4  
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=28.99  E-value=29  Score=16.33  Aligned_cols=23  Identities=17%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf             66765689999898971102165
Q gi|255764503|r   13 FEFFKISTLVAVGFLFCPFNGMF   35 (44)
Q Consensus        13 feffkistlvavgflfcpfngmf   35 (44)
                      -||.+++..+++||+.--+-|.+
T Consensus        32 ~Ef~~i~k~~~iG~~i~G~IGf~   54 (74)
T 1rh5_B           32 DEYLAVAKVTALGISLLGIIGYI   54 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999


No 5  
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=10.90  E-value=1e+02  Score=13.75  Aligned_cols=18  Identities=33%  Similarity=0.427  Sum_probs=13.5

Q ss_pred             CCCCCCHHHHHHHHHHHH
Q ss_conf             952347456336667656
Q gi|255764503|r    1 MDINVNDKEFQMFEFFKI   18 (44)
Q Consensus         1 mdinvndkefqmfeffki   18 (44)
                      |||.+..|.|.-|--|-.
T Consensus        16 MDi~~QEkTFdgFik~~t   33 (51)
T 1m56_D           16 MDITQQEKTFAGFVRMVT   33 (51)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             323788999989999999


No 6  
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=7.81  E-value=1.4e+02  Score=13.09  Aligned_cols=17  Identities=29%  Similarity=0.219  Sum_probs=13.0

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             95234745633666765
Q gi|255764503|r    1 MDINVNDKEFQMFEFFK   17 (44)
Q Consensus         1 mdinvndkefqmfeffk   17 (44)
                      |||.+..|.|.-|--|-
T Consensus         8 MDi~~QEkTF~gFik~~   24 (43)
T 1qle_D            8 MDIRHQQATFAGFIKGA   24 (43)
T ss_dssp             SCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             53388899998999999


No 7  
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=5.26  E-value=93  Score=13.90  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=15.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             95234745633666765689999
Q gi|255764503|r    1 MDINVNDKEFQMFEFFKISTLVA   23 (44)
Q Consensus         1 mdinvndkefqmfeffkistlva   23 (44)
                      |.|.+|+++++.-+-..+..|+.
T Consensus         1 M~I~vNg~~~~~~~~~tl~~ll~   23 (66)
T 1f0z_A            1 MQILFNDQAMQCAAGQTVHELLE   23 (66)
T ss_dssp             CCEEESSCEECCCTTCCHHHHHH
T ss_pred             CEEEECCEEEECCCCCCHHHHHH
T ss_conf             99999994888699999999998


No 8  
>3hw5_A Polymerase acidic protein; avian influenza virus, PA_N, AMP, phosphoprotein, hydrolase; HET: AMP; 1.81A {Influenza a virus} PDB: 3hw4_A* 3hw3_A* 3hw6_A 3ebj_A 2w69_A
Probab=3.82  E-value=2.5e+02  Score=11.80  Aligned_cols=36  Identities=33%  Similarity=0.525  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHC
Q ss_conf             745633666765689999898971102-----165564400
Q gi|255764503|r    6 NDKEFQMFEFFKISTLVAVGFLFCPFN-----GMFTLIESH   41 (44)
Q Consensus         6 ndkefqmfeffkistlvavgflfcpfn-----gmftliesh   41 (44)
                      .|.+.|--.|+.|.+-..|-|.+|-|+     |--|.|||.
T Consensus        31 edpki~~~~~~~Ic~HlevC~m~sd~~fide~G~st~~e~~   71 (261)
T 3hw5_A           31 EDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESTIIESG   71 (261)
T ss_dssp             CCTTTSHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             CCCCCCHHHHHHHHHHHEEEEEEECCEEECCCCCEEECCCC
T ss_conf             88431156899987451245776123010347851110268


No 9  
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=3.74  E-value=1.9e+02  Score=12.40  Aligned_cols=10  Identities=60%  Similarity=1.065  Sum_probs=6.8

Q ss_pred             HHHHHHHHHH
Q ss_conf             5689999898
Q gi|255764503|r   17 KISTLVAVGF   26 (44)
Q Consensus        17 kistlvavgf   26 (44)
                      ||..||..||
T Consensus         7 kiaqlvsmgf   16 (40)
T 1z96_A            7 KIAQLVSMGF   16 (40)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCCC
T ss_conf             9999998178


No 10 
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=3.48  E-value=2.1e+02  Score=12.24  Aligned_cols=10  Identities=80%  Similarity=1.139  Sum_probs=7.0

Q ss_pred             HHHHHHHHCCC
Q ss_conf             16556440014
Q gi|255764503|r   33 GMFTLIESHTI   43 (44)
Q Consensus        33 gmftlieshti   43 (44)
                      .||||. ||||
T Consensus       160 kmftll-shti  169 (182)
T 2vty_A          160 KMFTLL-SHTI  169 (182)
T ss_dssp             HHHHHH-HHHH
T ss_pred             HHHHHH-HHHH
T ss_conf             999987-3324


Done!