Query gi|255764503|ref|YP_003064954.2| hypothetical protein CLIBASIA_02140 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 09:37:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764503.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 26.4 20 0.0015 16.0 2.5 24 13-36 21-44 (56)
2 d1m56d_ f.23.8.1 (D:) Bacteria 14.7 38 0.0028 14.6 1.8 17 1-17 7-23 (42)
3 d1qled_ f.23.8.1 (D:) Bacteria 7.1 86 0.0063 12.9 2.5 16 1-16 8-23 (43)
4 d1z96a1 a.5.2.1 (A:295-332) UB 3.8 1.1E+02 0.0079 12.4 0.2 10 17-26 5-14 (38)
5 d3e46a1 a.5.2.1 (A:157-198) Ub 2.5 1.8E+02 0.013 11.4 0.2 12 16-27 8-19 (42)
6 d1mjta_ d.174.1.1 (A:) Nitric 2.2 1.6E+02 0.011 11.6 -0.5 10 26-35 217-226 (346)
7 d1q2oa_ d.174.1.1 (A:) Nitric 2.1 1.6E+02 0.012 11.6 -0.5 10 26-35 284-293 (416)
8 d1m7va_ d.174.1.1 (A:) Nitric 2.1 1.5E+02 0.011 11.7 -0.6 10 26-35 230-239 (363)
9 d3e7ma1 d.174.1.1 (A:77-497) N 2.1 1.6E+02 0.011 11.7 -0.6 10 26-35 282-291 (421)
10 d5csma_ a.130.1.2 (A:) Alloste 2.0 2.5E+02 0.018 10.7 0.6 12 2-13 110-121 (256)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.41 E-value=20 Score=15.97 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 667656899998989711021655
Q gi|255764503|r 13 FEFFKISTLVAVGFLFCPFNGMFT 36 (44)
Q Consensus 13 feffkistlvavgflfcpfngmft 36 (44)
-||-+++...++||+.--|-|.+-
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.66 E-value=38 Score=14.63 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=13.0
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 95234745633666765
Q gi|255764503|r 1 MDINVNDKEFQMFEFFK 17 (44)
Q Consensus 1 mdinvndkefqmfeffk 17 (44)
|||.+..|.|.-|--|-
T Consensus 7 MDi~vQEKTF~gFik~~ 23 (42)
T d1m56d_ 7 MDITQQEKTFAGFVRMV 23 (42)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 62398899999999999
No 3
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.12 E-value=86 Score=12.92 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=12.6
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 9523474563366676
Q gi|255764503|r 1 MDINVNDKEFQMFEFF 16 (44)
Q Consensus 1 mdinvndkefqmfeff 16 (44)
|||.|..|.|.-|--|
T Consensus 8 MDi~vQEkTF~gFi~~ 23 (43)
T d1qled_ 8 MDIRHQQATFAGFIKG 23 (43)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 5338889999999999
No 4
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=3.80 E-value=1.1e+02 Score=12.45 Aligned_cols=10 Identities=60% Similarity=1.065 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q ss_conf 5689999898
Q gi|255764503|r 17 KISTLVAVGF 26 (44)
Q Consensus 17 kistlvavgf 26 (44)
||..||..||
T Consensus 5 kiaqlvsmgf 14 (38)
T d1z96a1 5 KIAQLVSMGF 14 (38)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
T ss_conf 8999998278
No 5
>d3e46a1 a.5.2.1 (A:157-198) Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.50 E-value=1.8e+02 Score=11.38 Aligned_cols=12 Identities=50% Similarity=0.576 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 656899998989
Q gi|255764503|r 16 FKISTLVAVGFL 27 (44)
Q Consensus 16 fkistlvavgfl 27 (44)
-||..|.|.||-
T Consensus 8 ~kidklca~gf~ 19 (42)
T d3e46a1 8 KKIENLCAAGFD 19 (42)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
T ss_conf 889999871356
No 6
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Staphylococcus aureus [TaxId: 1280]}
Probab=2.16 E-value=1.6e+02 Score=11.64 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=5.5
Q ss_pred HHHHCHHHHH
Q ss_conf 8971102165
Q gi|255764503|r 26 FLFCPFNGMF 35 (44)
Q Consensus 26 flfcpfngmf 35 (44)
|-.|||||-+
T Consensus 217 y~aaPFNGWY 226 (346)
T d1mjta_ 217 YPTAPFNGWY 226 (346)
T ss_dssp ESCCCEECCC
T ss_pred ECCCCCCCCE
T ss_conf 4235665120
No 7
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.11 E-value=1.6e+02 Score=11.58 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=5.4
Q ss_pred HHHHCHHHHH
Q ss_conf 8971102165
Q gi|255764503|r 26 FLFCPFNGMF 35 (44)
Q Consensus 26 flfcpfngmf 35 (44)
|-.|||||-+
T Consensus 284 y~aaPFNGWY 293 (416)
T d1q2oa_ 284 FSAAPFSGWY 293 (416)
T ss_dssp ESCCCEECCC
T ss_pred ECCCCCCCCE
T ss_conf 4245645330
No 8
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.08 E-value=1.5e+02 Score=11.69 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=5.6
Q ss_pred HHHHCHHHHH
Q ss_conf 8971102165
Q gi|255764503|r 26 FLFCPFNGMF 35 (44)
Q Consensus 26 flfcpfngmf 35 (44)
|-.|||||-+
T Consensus 230 y~aaPFNGWY 239 (363)
T d1m7va_ 230 YNAAPFNGWY 239 (363)
T ss_dssp ESCCCEECCE
T ss_pred ECCCCCCCCE
T ss_conf 4245634342
No 9
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.06 E-value=1.6e+02 Score=11.67 Aligned_cols=10 Identities=60% Similarity=1.431 Sum_probs=5.4
Q ss_pred HHHHCHHHHH
Q ss_conf 8971102165
Q gi|255764503|r 26 FLFCPFNGMF 35 (44)
Q Consensus 26 flfcpfngmf 35 (44)
|-.|||||-+
T Consensus 282 y~aaPFNGWY 291 (421)
T d3e7ma1 282 FPACPFNGWY 291 (421)
T ss_dssp ESCCCEECCE
T ss_pred ECCCCCCCCE
T ss_conf 5456756450
No 10
>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.04 E-value=2.5e+02 Score=10.71 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHH
Q ss_conf 523474563366
Q gi|255764503|r 2 DINVNDKEFQMF 13 (44)
Q Consensus 2 dinvndkefqmf 13 (44)
+||+|++-..|+
T Consensus 110 ~vNvN~~I~~~Y 121 (256)
T d5csma_ 110 EVNYNDKIKKVY 121 (256)
T ss_dssp GCCCHHHHHHHH
T ss_pred CCCCCHHHHHHH
T ss_conf 465459999999
Done!