RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764503|ref|YP_003064954.2| hypothetical protein
CLIBASIA_02140 [Candidatus Liberibacter asiaticus str. psy62]
         (44 letters)



>gnl|CDD|181778 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit
           beta; Validated.
          Length = 282

 Score = 23.8 bits (52), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 5/23 (21%)

Query: 23  AVGFLFC----PFNGMFTLIESH 41
            VG +FC    P+ G+ T++E H
Sbjct: 129 IVG-IFCMENFPYEGLKTIVEDH 150


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.334    0.145    0.438 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 659,661
Number of extensions: 22479
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 5
Length of query: 44
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,627,137
Effective search space: 151932699
Effective search space used: 151932699
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.0 bits)