HHsearch alignment for GI: 255764504 and conserved domain: TIGR00675
>TIGR00675 dcm DNA-cytosine methyltransferase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.73 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine , , . In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA , . The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A : the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation.
Probab=99.81 E-value=1.9e-20 Score=137.45 Aligned_cols=98 Identities=39% Similarity=0.701 Sum_probs=80.7
Q ss_pred CCHHHCC-CCCCCCEEEEEEEE----------CC--CCCCCCCCC------CCCCCCHHHHHCCCC--CCCCCCCHHHHH
Q ss_conf 9834357-97376279999984----------78--887558887------777778445312567--743234688998
Q gi|255764504|r 1 MKACDFG-VPQRRERLYIIDFL----------NP--SVEFKFPTP------LGIKPRLGDILEEHI--DDKSTISNKLWE 59 (101)
Q Consensus 1 Lna~dfG-vPQ~ReRvfiVg~~----------~~--~~~f~~P~~------~~~~~~l~diL~~~v--d~k~~ls~~~~~ 59 (101)
T Consensus 165 LNa~dFGNvPQ~ReRiyIvG~r~~~~~~~~~~~~~~~~~F~fP~p~~~~~~~~~~~~~~d~~~~~~~~~~k~~~~~~~~~ 244 (425)
T TIGR00675 165 LNAKDFGNVPQNRERIYIVGFRKDLPKLKESTDFDDKLNFEFPKPIELKGKVAKKKRIGDLLDKSVDLEEKYYLSEEKKN 244 (425)
T ss_pred HHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHH
T ss_conf 61665178766505899998514520122221011032457887333304432120113221345665655442489987
Q ss_pred HHHHHHHHHHHH---------------HCCCCCE-------EECCC--CCCCCCEEE----CCCCCC
Q ss_conf 899787655532---------------0135520-------43488--775033010----403587
Q gi|255764504|r 60 GHQKRKENNKIA---------------GKGFGYG-------LFFEN--SATTNTLSA----RYYKDG 98 (101)
Q Consensus 60 ~l~~~~~~~k~~---------------g~GFg~~-------~~~~~--~~~~~Ti~a----rY~Kdg 98 (101)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~W~Dg~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (425)
T TIGR00675 245 GLLLLLENMRKKEGSLAKILIWMDGRVGTGEQLGSENVDDGFYNRESKSSILRTLSADKIKKYYLEG 311 (425)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 6765442044112641330000034103322234332235421688801005653164312111235