RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI
[Candidatus Liberibacter asiaticus str. psy62]
(101 letters)
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} (A:1-192,A:307-327)
Length = 213
Score = 43.3 bits (101), Expect = 1e-05
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 1 MKACDFGVPQRRERLYIIDFLN--PSVEFKFPTPLGIKPR 38
+ A D+G+PQ+RER+Y+I F N F+FP P +
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTF 191
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,
unmethylated H3K4, de novo DNA methylation, transferase
regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
(B:182-386)
Length = 205
Score = 43.3 bits (101), Expect = 1e-05
Identities = 6/75 (8%), Positives = 10/75 (13%), Gaps = 7/75 (9%)
Query: 1 MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPR--LGDILE--EHIDDKSTISNK 56
+ G Q R++ S + N
Sbjct: 128 IPDVHGGSLQNAVRVWSNIPAIRS-RHWALVSEEELSLLAQNKQSSKLAAKWPTKLVKNC 186
Query: 57 LWEGH--QKRKENNK 69
K
Sbjct: 187 FLPLREYFKYFSTEL 201
>3g7u_A Cytosine-specific methyltransferase; DNA-binding,
NAD-binding, structural genomics, protein structure
initiative, PSI; 1.75A {Escherichia coli O157}
(A:1-188,A:352-376)
Length = 213
Score = 42.6 bits (99), Expect = 2e-05
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MKACDFGVPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEG 60
+KA D+G P R R + I S++ + + + I+ E+I + N L EG
Sbjct: 151 VKASDYGAPTIRTRYFFIGVK-KSLKLDISDEVFMPKMISPIVAEYI--LKGLYNLLNEG 207
Query: 61 HQ 62
H
Sbjct: 208 HH 209
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA
methyltransferase homologue; HET: DNA SAH; 1.80A {Homo
sapiens} (A:1-202,A:296-343)
Length = 250
Score = 41.7 bits (97), Expect = 4e-05
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 1 MKACDFGVPQRRERLYIIDFLNP-SVEFKFPTP-LGIKPRLGDILEEHIDDKSTIS 54
+ G+P R R ++I L + F+ P L P++ + D +++
Sbjct: 148 LSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVT 203
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase
3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH;
2.89A {Homo sapiens} (A:1-192,A:277-295)
Length = 211
Score = 36.4 bits (83), Expect = 0.001
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 1 MKACDFGVPQRRERLY--IIDFLNPSVEFKFPTPL 33
+ A + R + + P + P+
Sbjct: 163 IDAKEVSAAHRARYFWGNLPGMNRP-LASTVSVPV 196
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA
methyltransferase 3A (DNMT3A) and ITS regulatory factor;
HET: DNA SAH; 2.89A {Homo sapiens} (B:1-177)
Length = 177
Score = 34.3 bits (78), Expect = 0.006
Identities = 1/20 (5%), Positives = 3/20 (15%)
Query: 3 ACDFGVPQRRERLYIIDFLN 22
G + +
Sbjct: 154 PDVHGGSLQNAVRVWSNIPA 173
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A
{Haemophilus haemolyticus} (A:193-274)
Length = 82
Score = 30.0 bits (68), Expect = 0.12
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 5 DFGVPQRRERLYIIDFLNP-SVEFKFPTPLGIKPRLGDI 42
D +P +ID + + RLG +
Sbjct: 2 DLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIV 40
>1uhr_A SWI/SNF related, matrix associated, actin dependent
regulator of chromatin subfamily...; structural
genomics, chromatin remodeling; NMR {Mus musculus}
(A:1-47)
Length = 47
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 29 FPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
P + PRL +L H + I LW+
Sbjct: 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQ 38
>3bfq_G Protein FIMG; incomplete IG-like fold, donor strand
exchange, cell projection, fimbrium, cell adhesion;
1.34A {Escherichia coli str} PDB: 3bfw_A (G:)
Length = 132
Score = 25.0 bits (54), Expect = 3.9
Identities = 3/42 (7%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 62 QKRKENNKIAGKGFGYGLFFENSATTNTL--SARYYKDGSEI 101
+ + ++ G + ++S+ + R
Sbjct: 75 ELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGA 116
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG,
ATR88, structural genomics, PSI-2, protein structure
initiative; 2.70A {Agrobacterium tumefaciens str} (A:)
Length = 176
Score = 24.4 bits (53), Expect = 5.1
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 7 GVPQRRERLY-----IIDFLNPSVEF--KFPTPLGIKPRL--GDILEEHIDDKSTISNKL 57
P E+L I F +PSV F +F PL + +I + ++ +++
Sbjct: 90 DTP---EKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEXEEAEITAYPVSHEAKPASET 146
Query: 58 WEGHQKRKENN 68
+ +++KE +
Sbjct: 147 PKSGEEKKEGS 157
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 24.5 bits (53), Expect = 5.2
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 39/98 (39%)
Query: 28 KFPTPL--------GIKPRLGDI----------LEEHIDDKSTISNKLWEGHQKRKENNK 69
K+ +P + R I L+ ++ + E +R
Sbjct: 18 KYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQN--EFLLERTR--- 72
Query: 70 IAGKGFGYGLFFENSATTNTLSARY------YKDGSEI 101
N A + +A+ YK I
Sbjct: 73 ----------EIHNEAESQLRAAQQQWGNDFYKRDPRI 100
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex
subunit, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Arabidopsis
thaliana} (A:)
Length = 93
Score = 24.3 bits (53), Expect = 6.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 29 FPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
P + L D+L ++ + I +W
Sbjct: 8 VPEKFKLSTALMDVLGIEVETRPRIIAAIWH 38
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus}
(A:1-198,A:495-534)
Length = 238
Score = 23.8 bits (51), Expect = 7.7
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 32 PLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKENNKIAGKG 74
+ + DI+ + ++ T+S K+ GH N +I
Sbjct: 16 RYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGK 58
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane
protein, multiprotein-pigment complex, photosynthesis;
HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus
elongatus} (B:294-629)
Length = 336
Score = 23.7 bits (51), Expect = 8.5
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 34 GIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
GI + ++++ + + HQ
Sbjct: 2 GIGHSIKEMMDAKDFFGTKVEGPFNMPHQ 30
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.139 0.419
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 811,372
Number of extensions: 33331
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 18
Length of query: 101
Length of database: 4,956,049
Length adjustment: 59
Effective length of query: 42
Effective length of database: 2,961,554
Effective search space: 124385268
Effective search space used: 124385268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)