RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764504|ref|YP_003064930.2| DNA-methyltransferase MKpn2kI
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
           haemolyticus [TaxId: 726]}
          Length = 327

 Score = 26.9 bits (58), Expect = 0.55
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 1   MKACDFGVPQRRERLYIIDFLNPSV--EFKFPTPLGIKPRLGDILEEHIDDKSTISN--- 55
           + A D+G+PQ+RER+Y+I F N      F+FP P  +   + D+L    + +  + +   
Sbjct: 152 LNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKD 211

Query: 56  -----KLWEGHQKRKENNKIAGKGFGYGLFFENSATTNTLSARYYKDGSEI 101
                +  E    +     I GKG      +       TLSA      ++ 
Sbjct: 212 LVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSAYGGGIFAKT 262


>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin
          (BRG1-associated factor 60a) {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 93

 Score = 24.3 bits (53), Expect = 3.0
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 29 FPTPLGIKPRLGDILEEHIDDKSTISNKLWE 59
           P    + PRL  +L  H   +  I   LW+
Sbjct: 8  QPPQFKLDPRLARLLGIHTQTRPVIIQALWQ 38


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 23.3 bits (50), Expect = 6.2
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 31  TPLGIKPRLGDILEEHIDDKSTISNKLWEGHQ 62
           T  GI   + ++++      + +       HQ
Sbjct: 292 TQFGIGHSIKEMMDAKDFFGTKVEGPFNMPHQ 323


>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase
           {Streptomyces clavuligerus [TaxId: 1901]}
          Length = 311

 Score = 23.0 bits (48), Expect = 6.7
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 12  RERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEE 45
             R   + FL P+ +F F  PL  +      L+ 
Sbjct: 256 SSRTSSVFFLRPNADFTFSVPLARECGFDVSLDG 289


>d1tjna_ c.92.1.3 (A:) Sirohydrochlorin cobaltochelatase CbiX
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 125

 Score = 23.0 bits (49), Expect = 6.8
 Identities = 2/25 (8%), Positives = 7/25 (28%)

Query: 23  PSVEFKFPTPLGIKPRLGDILEEHI 47
              +     P+G    +   +   +
Sbjct: 97  EGKKVVICEPIGEDYFVTYAILNSV 121


>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form
          {Plasmodium knowlesi [TaxId: 5850]}
          Length = 294

 Score = 23.1 bits (49), Expect = 7.9
 Identities = 7/61 (11%), Positives = 22/61 (36%)

Query: 8  VPQRRERLYIIDFLNPSVEFKFPTPLGIKPRLGDILEEHIDDKSTISNKLWEGHQKRKEN 67
          +  RR +L + +  N     +  +   I     ++  + + D +   + L + +  +   
Sbjct: 23 ISDRRYQLCMKELTNLVNNTRTHSHNDITFLKLNLKRKLMYDAAVEGDLLLKKNNYQYNK 82

Query: 68 N 68
           
Sbjct: 83 E 83


>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
           carotovorum [TaxId: 554]}
          Length = 296

 Score = 22.6 bits (47), Expect = 8.9
 Identities = 3/42 (7%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 29  FPTPLGIKPRLGDILEEHIDDKST---ISNKLWEGHQKRKEN 67
                 +     ++L   +D+  T    + ++++   + + +
Sbjct: 241 IHEGSSVNQAFANVLGSTVDNYQTKSRFTYRVYQAFLRGRLS 282


>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 106

 Score = 22.6 bits (48), Expect = 9.0
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 36 KPRLGDILEEHIDDKSTISNKL 57
          + +L  +LE++I+++  I   L
Sbjct: 66 REQLQILLEQNINERLNIGEPL 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 397,011
Number of extensions: 16765
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 9
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)