HHsearch alignment for GI: 255764505 and conserved domain: PRK11337
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional.
Probab=99.94 E-value=2.4e-25 Score=204.82 Aligned_cols=172 Identities=18% Similarity=0.209 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45799999999999999999999972001136699999999827995999933813799999999987508861101233
Q gi|255764505|r 20 KNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA 99 (341)
Q Consensus 20 ~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ 99 (341)
T Consensus 101 ~d~~~~i~~k~~~~~~~~l~~t~~~ld~---~~i~~av~li~~A~-~I~i~G~G~S~~vA~~~~~kl~rlG~~~~~~~d~ 176 (293)
T PRK11337 101 DDAPQDVVNKVFNISLQTIMEGQSIVNV---DEIHRAARFFYQAR-QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDA 176 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 8889999999999999999999972699---99999999998279-7089985726999999999999859804764777
Q ss_pred CHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 02320230121047078983687807887666663204562799844788954521453376886155432475217899
Q gi|255764505|r 100 EASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSA 179 (341)
Q Consensus 100 ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~St 179 (341)
T Consensus 177 ~~~~~~a~~l~~~Dv~i~iS~sG~t~e~i~~~~~Ak~~Ga~vI~IT~~~~SpLa~~aD~vL~~~~~e~--~~~~~~~~sr 254 (293)
T PRK11337 177 HIMMMSASLLQEGDVVLVVSHSGRTSDVKAAVELAKQNGAKIICITHSYHSPIAKLADYIICSPAPET--PLLGRNASAR 254 (293)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCEEEECCCCCC--CCCCCCHHHH
T ss_conf 89999997189998899981899988999999999987994999769999846895899886488764--4344445999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999850
Q gi|255764505|r 180 IMQLAIGDALAIALLESR 197 (341)
Q Consensus 180 t~~l~~~Dalav~l~~~~ 197 (341)
T Consensus 255 ~~ql~viD~L~~~~~~~~ 272 (293)
T PRK11337 255 ILQLTLLDAFFVSVAQLN 272 (293)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999978