HHsearch alignment for GI: 255764505 and conserved domain: TIGR00393
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=678.99 Aligned_cols=267 Identities=46% Similarity=0.759 Sum_probs=260.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 95999933813799999999987508861101233023202301210470789836878078876666632045627998
Q gi|255764505|r 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 65 grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
T Consensus 1 GklVv~GiGKSGliGkK~vAt~aSTGtPSfFlHPtEA~HGDLGMv~~~Dvvl~ISYSGEs~e~~~Lip~Lk~~~~~lia~ 80 (272)
T TIGR00393 1 GKLVVVGIGKSGLIGKKIVATFASTGTPSFFLHPTEALHGDLGMVEPRDVVLLISYSGESKELDKLIPSLKRLSVKLIAV 80 (272)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 90899840706678999999741247755324643450364357586747999876887577877535777559708997
Q ss_pred ECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 4478895452145337688615543247521789999999999999999985033878887531100111124-333332
Q gi|255764505|r 145 TSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDV 223 (341)
Q Consensus 145 T~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~Di 223 (341)
T Consensus 81 T~~p~S~La~~Ad~~L~i~v~kEaCP~~lAPTsSt~~TL~lGDaLa~al~~ArnF~~eDFA~~HPGG~LG~kLL~kV~dl 160 (272)
T TIGR00393 81 TGKPNSSLARAADYVLDIKVEKEACPLNLAPTSSTTVTLALGDALAVALMKARNFSEEDFAKFHPGGALGRKLLVKVKDL 160 (272)
T ss_pred CCCCCCCHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 28889724530654576677530278989735689999998899999998525888424411487046667888876776
Q ss_pred HCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH--HHC-CCCCCCHHHHCCCCCEEEC-CC
Q ss_conf 1047543055100238888987410466200000043232324123403567--617-8233709883488978977-99
Q gi|255764505|r 224 MHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN--FHK-DLNTLSVEDVMIKNPKVIL-ED 299 (341)
Q Consensus 224 M~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~--l~~-~~~~~~v~~iMt~~p~~I~-~d 299 (341)
T Consensus 161 m~t~d~lP~v~~tas~~DAL~e~~~~~LG~~~v~~~~~~~~Gv~tDGD~RR~l~~~g~~~l~~~v~~~mT~~p~~~~n~~ 240 (272)
T TIGR00393 161 MQTDDELPLVAPTASFKDALLEMSRKRLGLAVVCDENEQLKGVFTDGDLRRVLALLGGGALKKEVKDFMTLGPKTLKNSD 240 (272)
T ss_pred HCCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCHHCCCCHHHHCCCCCEEEECHH
T ss_conf 40665678222367720210233137861799971555246787146599999881660002312221068881340145
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCEEEEEEE
Q ss_conf 87899999999679958999806984899985
Q gi|255764505|r 300 TLLTVAMQLLRQHNISVLMVVDDCQKAIGIVH 331 (341)
Q Consensus 300 ~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt 331 (341)
T Consensus 241 ~~l~~A~~~l~~~kI~~~~vvdd~nkl~G~~~ 272 (272)
T TIGR00393 241 ELLVEALEFLKKRKITSLVVVDDENKLLGVLH 272 (272)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC
T ss_conf 68999999987279428999838971787539