HHsearch alignment for GI: 255764505 and conserved domain: TIGR03415
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.71 E-value=0.00013 Score=53.84 Aligned_cols=171 Identities=10% Similarity=0.103 Sum_probs=92.3
Q ss_pred HHHHHHH-HHHCCCCCEEEEECCCCCHHHHCCCCEEEEE---EECCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8876666-6320456279984478895452145337688---6155432475--21789999999999999999985033
Q gi|255764505|r 126 ELKAILY-YARRFSIPLIAITSENKSVVACHADIVLTLP---KEPESCPHGL--APTTSAIMQLAIGDALAIALLESRNF 199 (341)
Q Consensus 126 e~~~~~~-~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~---~~~Ea~~~~~--aPt~Stt~~l~~~Dalav~l~~~~~~ 199 (341)
T Consensus 202 ~l~~~l~~L~~~~~~TiifVTHD~~-EA~~laDRIaVM~~G~IvQ~gtpeeI~~~Pan~~V~~Fv--------------- 265 (382)
T TIGR03415 202 QLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV--------------- 265 (382)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHC---------------
T ss_conf 9999999999986998999879999-999868989999899899965889998679975898622---------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC
Q ss_conf 87888753110011112433333210475430551002388889874104662000000432323241234035676178
Q gi|255764505|r 200 SENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD 279 (341)
Q Consensus 200 t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~ 279 (341)
T Consensus 266 ----------g~~~~~~vl~a~~vm~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~-~~~~~~~~~-~ 321 (382)
T TIGR03415 266 ----------AHTNPLNVLTARSLMRPLTD--LEHVDGGWCVSDRRDTW-----LFTIDKQ-----VR-RRDAKLPVQ-A 321 (382)
T ss_pred ----------CCCCCCCEEEHHHHCCCCCC--CCCCCCCHHHHHHHCCC-----CCCCCHH-----HH-CCCCCCHHH-H
T ss_conf ----------97872112568784367410--01357403344332000-----0132022-----10-144310222-2
Q ss_pred CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 23370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 280 LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 280 ~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~v~~~g~l~G~i~~~~~l~~ 378 (382)
T TIGR03415 322 WAAEQEVESLEAAPTVINPDTLMRDVLAARHRTGGA--ILLVENGRIVGVIGDDNIYHA 378 (382)
T ss_pred CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHCCCC--EEEECCCEEEEEEEHHHHHHH
T ss_conf 134430223125773338989399999999858998--099059959999868999998