HHsearch alignment for GI: 255764505 and conserved domain: cd04584
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.52 E-value=3.5e-07 Score=72.62 Aligned_cols=54 Identities=31% Similarity=0.539 Sum_probs=50.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
T Consensus 67 ~~V~~iM~~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd-~~~lvGivt~~Dilr 120 (121)
T cd04584 67 MPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVE-DGRLVGIITETDLLR 120 (121)
T ss_pred CCHHHHCCC--CCCEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHC
T ss_conf 899996679--985898999599999998866961999999-999999998226006