HHsearch alignment for GI: 255764505 and conserved domain: cd04589
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.79 E-value=1.7e-18 Score=155.01 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=95.9
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 3055100238888987410466200000043232324123403567617--82337098834889789779987899999
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
T Consensus 3 pvtv~~~~ti~ea~~~M~~~~i~~~vV~~~~-~~~GIvT~~Dl~~~~~~~~~~~~~~V~~vms~~~~ti~~~~~~~~a~~ 81 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDGD-PRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNALL 81 (111)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
T ss_conf 9899992989999999997099889997699-279999979989999829996788999928799989999792999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999679958999806984899985888974
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
T Consensus 82 ~M~~~~i~~lpV~d~-~~~vGivt~~Dil~ 110 (111)
T cd04589 82 LMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHCCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf 999879808899989-99999999688228