HHsearch alignment for GI: 255764505 and conserved domain: cd04591
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.47 E-value=6.5e-13 Score=114.33 Aligned_cols=100 Identities=26% Similarity=0.360 Sum_probs=91.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCC---CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 4305510023888898741046620000004---3232324123403567617823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDE---GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~---~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
T Consensus 3 ~vv~~~~~~tv~~~~~ll~~~~~~g~PVv~~~~~~~~lvG~i~~~dl~~~l---------~~~m~~~p~tv~~~~~l~~~ 73 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL---------KNYIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEHHHHHHHH---------HHHCCCCCEEECCCCCHHHH
T ss_conf 689938998999999999977997585883688788899999999999999---------97587998398999959999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 999996799589998069848999858889743
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 74 ~~lf~~~g~r~l~Vv~-~g~lvGiITr~Dl~~a 105 (105)
T cd04591 74 HQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHHHHHHCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 9999994995889957-9999999998995349