HHsearch alignment for GI: 255764505 and conserved domain: cd04592
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.15 E-value=7.7e-06 Score=62.83 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=44.1
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 97897799878999999996799589998069848999858889743
Q gi|255764505|r 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 292 ~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 2 ~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~~L~GIvt~gDi~R~ 48 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRF 48 (133)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 45998999859999999998188657998389978999787999999