HHsearch alignment for GI: 255764505 and conserved domain: cd04593
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.84 E-value=1.7e-20 Score=169.48 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=102.1
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 30551002388889874104662000000432323241234035676178--2337098834889789779987899999
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
T Consensus 3 P~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~g~lvGIvT~~Dl~r~~~~~~~~~~~~v~~vmt~~~~tv~pd~~l~~al~ 82 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHALD 82 (115)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHHH
T ss_conf 83889919999999999874998999994999889998899999999738886677945430389668999994999999
Q ss_pred HHHHCCCCEEEEEECC--CEEEEEEEHHHHHHC
Q ss_conf 9996799589998069--848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDC--QKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~--~~lvGiIt~~DLlka 338 (341)
T Consensus 83 ~M~~~~i~~LPVVd~~~~~~lvGiit~~Dil~A 115 (115)
T cd04593 83 RMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHCCCCEEEEEECCCCCEEEEEEEHHHHHCC
T ss_conf 999869988999978999989999997996569