HHsearch alignment for GI: 255764505 and conserved domain: cd04594
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.79 E-value=1e-18 Score=156.52 Aligned_cols=100 Identities=23% Similarity=0.165 Sum_probs=93.5
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 55100238888987410466200000043232324123403567617823370988348897897799878999999996
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQ 311 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~ 311 (341)
T Consensus 5 tV~pd~tV~eA~~lM~~~~i~~lPVvd-~~klvGIvt~rDi~~~-----~~~~v~d~Mt~~v~tv~p~~~l~ea~~lM~~ 78 (104)
T cd04594 5 KVKDYDKVYEAKRIMIENDLLSLPVVD-YNKFLGAVYLKDIENA-----TYGDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHHHC-----CCCCHHHEEECCCEEECCCCCHHHHHHHHHH
T ss_conf 989999399999999983988788998-9999999997996524-----6998445476398889998979999999998
Q ss_pred CCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 799589998069848999858889743
Q gi|255764505|r 312 HNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 312 ~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 79 ~~i~~lPVvd-~gklvGIIT~~Dil~A 104 (104)
T cd04594 79 NKTRWCPVVD-DGKFKGIVTLDSILDA 104 (104)
T ss_pred CCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 6978789998-9999999996895378