HHsearch alignment for GI: 255764505 and conserved domain: cd04595
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.78 E-value=8.2e-19 Score=157.27 Aligned_cols=108 Identities=27% Similarity=0.395 Sum_probs=101.9
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
T Consensus 3 pV~ti~p~~tv~ea~~~m~~~~i~~lpVvd~-~~lvGivT~~Di~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~a~~~ 81 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCEEEEECCEEEECCCCCHHHHHHH
T ss_conf 9899799599999999999759988999989-999999976898877653767881210325366886699939999998
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 82 m~~~~~~~lpVvd~-g~lvGiit~~Dilks 110 (110)
T cd04595 82 MVEHDIGRVPVVED-GRLVGIVTRTDLLRT 110 (110)
T ss_pred HHHCCCEEEEEEEC-CEEEEEEEHHHEECC
T ss_conf 89749139999989-999999984156157