HHsearch alignment for GI: 255764505 and conserved domain: cd04598
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=4.7e-16 Score=137.24 Aligned_cols=109 Identities=23% Similarity=0.320 Sum_probs=97.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCC-CCCEEEECCCCCEEEEEEECCCHHHHHHCC-----CCCCCHHHHCCCCCEEECCCCCH
Q ss_conf 430551002388889874104-662000000432323241234035676178-----23370988348897897799878
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEK-RFGCVAVVDEGQKLKGIITEGDIFRNFHKD-----LNTLSVEDVMIKNPKVILEDTLL 302 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~-~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-----~~~~~v~~iMt~~p~~I~~d~~i 302 (341)
T Consensus 2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd-~~r~vGiisr~dl~~~~~~~~g~~l~~~~pV~~~M~~~p~~v~~~~~i 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD-DGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEEHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCEEECCCCCH
T ss_conf 9857499984999999998789967689987-998899998999999870743223303895899716898799898969
Q ss_pred HHHHHHHHHCCCCEEE---EEECCCEEEEEEEHHHHHHC
Q ss_conf 9999999967995899---98069848999858889743
Q gi|255764505|r 303 TVAMQLLRQHNISVLM---VVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 303 ~eAl~lM~~~kI~~Lp---VVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 81 ~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr~ 119 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLRQ 119 (119)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHCC
T ss_conf 999999985693325788589579989999898994079