HHsearch alignment for GI: 255764505 and conserved domain: cd04598

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68  E-value=4.7e-16  Score=137.24  Aligned_cols=109  Identities=23%  Similarity=0.320  Sum_probs=97.3

Q ss_pred             CCEEEEEHHHHHHHHHHHHCC-CCCEEEECCCCCEEEEEEECCCHHHHHHCC-----CCCCCHHHHCCCCCEEECCCCCH
Q ss_conf             430551002388889874104-662000000432323241234035676178-----23370988348897897799878
Q gi|255764505|r  229 SIPLVKIGCPLIDAITILSEK-RFGCVAVVDEGQKLKGIITEGDIFRNFHKD-----LNTLSVEDVMIKNPKVILEDTLL  302 (341)
Q Consensus       229 ~ip~V~~~~si~eal~~m~~~-~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-----~~~~~v~~iMt~~p~~I~~d~~i  302 (341)
T Consensus         2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd-~~r~vGiisr~dl~~~~~~~~g~~l~~~~pV~~~M~~~p~~v~~~~~i   80 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD-DGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL   80 (119)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEEHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCEEECCCCCH
T ss_conf             9857499984999999998789967689987-998899998999999870743223303895899716898799898969


Q ss_pred             HHHHHHHHHCCCCEEE---EEECCCEEEEEEEHHHHHHC
Q ss_conf             9999999967995899---98069848999858889743
Q gi|255764505|r  303 TVAMQLLRQHNISVLM---VVDDCQKAIGIVHFLDLLRF  338 (341)
Q Consensus       303 ~eAl~lM~~~kI~~Lp---VVD~~~~lvGiIt~~DLlka  338 (341)
T Consensus        81 ~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr~  119 (119)
T cd04598          81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLRQ  119 (119)
T ss_pred             HHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHCC
T ss_conf             999999985693325788589579989999898994079