HHsearch alignment for GI: 255764505 and conserved domain: cd04599

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.78  E-value=1.8e-18  Score=154.80  Aligned_cols=104  Identities=25%  Similarity=0.284  Sum_probs=95.3

Q ss_pred             CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf             43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r  229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL  308 (341)
Q Consensus       229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l  308 (341)
T Consensus         2 d~vtv~p~~tv~ea~~lM~~~~i~~lpVv~-~~~lvGivT~~Dl~~~~----~~~~v~~iMt~~~itv~~~~~l~~a~~~   76 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH----PNRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHHCCC----CCCCHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf             989968949899999999863998899999-99998999810531278----8879688502798999794919999997


Q ss_pred             HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf             996799589998069848999858889743
Q gi|255764505|r  309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF  338 (341)
Q Consensus       309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka  338 (341)
T Consensus        77 M~~~~i~~lpVvd~-g~lvGiiT~~Divre  105 (105)
T cd04599          77 MEEKKIERLPVLRE-RKLVGIITKGTIALE  105 (105)
T ss_pred             HHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf             79859979999989-999999994586158