HHsearch alignment for GI: 255764505 and conserved domain: cd04599
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.78 E-value=1.8e-18 Score=154.80 Aligned_cols=104 Identities=25% Similarity=0.284 Sum_probs=95.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
T Consensus 2 d~vtv~p~~tv~ea~~lM~~~~i~~lpVv~-~~~lvGivT~~Dl~~~~----~~~~v~~iMt~~~itv~~~~~l~~a~~~ 76 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH----PNRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHHCCC----CCCCHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf 989968949899999999863998899999-99998999810531278----8879688502798999794919999997
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 77 M~~~~i~~lpVvd~-g~lvGiiT~~Divre 105 (105)
T cd04599 77 MEEKKIERLPVLRE-RKLVGIITKGTIALE 105 (105)
T ss_pred HHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf 79859979999989-999999994586158