HHsearch alignment for GI: 255764505 and conserved domain: cd04599
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1.6e-06 Score=67.84 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=48.5
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 33332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
T Consensus 52 ~v~~iMt~--~~itv~~~~~l~~a~~~M~~~~i~~lpVvd-~g~lvGiiT~~Divr 104 (105)
T cd04599 52 LVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLR-ERKLVGIITKGTIAL 104 (105)
T ss_pred CHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf 96885027--989997949199999977985997999998-999999999458615