HHsearch alignment for GI: 255764505 and conserved domain: cd04601
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.76 E-value=5.2e-18 Score=151.42 Aligned_cols=107 Identities=29% Similarity=0.363 Sum_probs=96.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCE-EECCCCCHHHHHH
Q ss_conf 430551002388889874104662000000432323241234035676178233709883488978-9779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK-VILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~-~I~~d~~i~eAl~ 307 (341)
T Consensus 3 dvvtv~~~~sl~~a~~~m~~~~~~~~pVvd~~~~l~Giit~~Dl~~~~~---~~~~v~~iM~~~~~~~~~~~~~~~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHCC---CCCCCEEEEECCCEEEECCCCCHHHHHH
T ss_conf 8989799396999999999849988999948996987887767765057---6786035770575087047687999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 80 ~m~~~~i~~lpVvd~~~~lvGiIt~~Dilk~ 110 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEKR 110 (110)
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 9986685199999889999999995984379