HHsearch alignment for GI: 255764505 and conserved domain: cd04602
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.70 E-value=7.9e-17 Score=142.83 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=93.4
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCC---CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCC--EEECCCCCHHH
Q ss_conf 305510023888898741046620000004---3232324123403567617823370988348897--89779987899
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDE---GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNP--KVILEDTLLTV 304 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~---~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p--~~I~~d~~i~e 304 (341)
T Consensus 4 Pvtv~p~~tv~ea~~lm~~~~~~~~pVvd~g~~~~klvGIvT~rDi~~~---~~~~~~v~~iMt~~~~~i~~~~~~~l~e 80 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL---TDSETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHHHHHC---CCCCCCCCCEEECCCEEEEECCCCCHHH
T ss_conf 9997998999999999997198779999657768969999997895235---0767656351652766899479878999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999999679958999806984899985888974
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
T Consensus 81 a~~~m~~~~i~~LPVVd~~g~LvGiIT~~Di~k 113 (114)
T cd04602 81 ANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHCCCCEEEEECCCCEEEEEEECHHHCC
T ss_conf 999999749667819978996999999244036