HHsearch alignment for GI: 255764505 and conserved domain: cd04609

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.66  E-value=4.2e-16  Score=137.57  Aligned_cols=106  Identities=26%  Similarity=0.340  Sum_probs=95.1

Q ss_pred             CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf             43055100238888987410466200000043232324123403567617--8233709883488978977998789999
Q gi|255764505|r  229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAM  306 (341)
Q Consensus       229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl  306 (341)
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~~~~v~~iM~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCCCCHHHHH
T ss_conf             8069999497999999999819988999989-999999999999999863876468769845675945978989499999


Q ss_pred             HHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf             9999679958999806984899985888974
Q gi|255764505|r  307 QLLRQHNISVLMVVDDCQKAIGIVHFLDLLR  337 (341)
Q Consensus       307 ~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk  337 (341)
T Consensus        81 ~~~~~~~~--~~vV~~~g~lvGIvT~~Dil~  109 (110)
T cd04609          81 ELLDRGNV--AVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHCCC--CEEEECCCEEEEEEEHHHHHC
T ss_conf             98876798--249961999999998368529