HHsearch alignment for GI: 255764505 and conserved domain: cd04609
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.66 E-value=4.2e-16 Score=137.57 Aligned_cols=106 Identities=26% Similarity=0.340 Sum_probs=95.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617--8233709883488978977998789999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAM 306 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl 306 (341)
T Consensus 2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~~~~v~~iM~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCCCCHHHHH
T ss_conf 8069999497999999999819988999989-999999999999999863876468769845675945978989499999
Q ss_pred HHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 9999679958999806984899985888974
Q gi|255764505|r 307 QLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 307 ~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
T Consensus 81 ~~~~~~~~--~~vV~~~g~lvGIvT~~Dil~ 109 (110)
T cd04609 81 ELLDRGNV--AVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHCCC--CEEEECCCEEEEEEEHHHHHC
T ss_conf 98876798--249961999999998368529