HHsearch alignment for GI: 255764505 and conserved domain: cd04610
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.77 E-value=4.5e-18 Score=151.92 Aligned_cols=106 Identities=26% Similarity=0.361 Sum_probs=97.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 54305510023888898741046620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
T Consensus 2 kdvvtv~~d~tv~ea~~~m~~~~~~~~pVvd-~~~lvGivt~~Dll~---~-~~~~~v~~iM~~~~~tv~~~~~l~~a~~ 76 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD-NGKVVGIVSARDLLG---K-DPDETVEEIMSKDLVVAVPEMDIMDAAR 76 (107)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHCC---C-CCCCCHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 8809989929599999999975997899998-999999887645315---9-9877267860578601699986999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 77 ~m~~~~~~~lpVvde~g~lvGiiT~~Dilra 107 (107)
T cd04610 77 VMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred HHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9998299689699239989999994784439