HHsearch alignment for GI: 255764505 and conserved domain: cd04617

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.86  E-value=2.2e-21  Score=175.94  Aligned_cols=106  Identities=25%  Similarity=0.389  Sum_probs=98.4

Q ss_pred             EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH--CCCCCCCHHHHCCCCC--EEECCCCCHHHHHH
Q ss_conf             5510023888898741046620000004323232412340356761--7823370988348897--89779987899999
Q gi|255764505|r  232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH--KDLNTLSVEDVMIKNP--KVILEDTLLTVAMQ  307 (341)
Q Consensus       232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~--~~~~~~~v~~iMt~~p--~~I~~d~~i~eAl~  307 (341)
T Consensus         5 tv~~~~si~eA~~~M~~~~ig~l~VVD~~~~LvGIiT~rDl~r~~~~~~~~~~~pV~~iMT~~P~vvt~~pd~~v~~A~~   84 (118)
T cd04617           5 VVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAK   84 (118)
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf             98996999999999998399879998499959999878999999974898467829998577997199789993999999


Q ss_pred             HHHHCCCCEEEEEECCC---EEEEEEEHHHHHH
Q ss_conf             99967995899980698---4899985888974
Q gi|255764505|r  308 LLRQHNISVLMVVDDCQ---KAIGIVHFLDLLR  337 (341)
Q Consensus       308 lM~~~kI~~LpVVD~~~---~lvGiIt~~DLlk  337 (341)
T Consensus        85 ~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~k  117 (118)
T cd04617          85 KLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHCCCCEECEEECCCCCEEEEEEEECCCEEC
T ss_conf             999829998567943997408999997751504