HHsearch alignment for GI: 255764505 and conserved domain: cd04619
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.88 E-value=5e-22 Score=180.71 Aligned_cols=109 Identities=27% Similarity=0.396 Sum_probs=102.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC---CCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617---823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK---DLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~---~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
T Consensus 2 rvitV~~~~ti~eA~~~M~~~~ig~l~Vvd~~g~lvGIiTe~Di~r~~~~~~~~~~~~~V~~vMt~~vitv~~~~~i~~a 81 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCHHHH
T ss_conf 31298986939999999987499889999899959999994999999873079866789999615898899998909999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99999679958999806984899985888974
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
T Consensus 82 ~~~M~~~~i~~lPVVD~~~~~vGiit~~Dilk 113 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHEEC
T ss_conf 99888769858899907995999999354542