HHsearch alignment for GI: 255764505 and conserved domain: cd04620
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.85 E-value=6.3e-21 Score=172.66 Aligned_cols=109 Identities=32% Similarity=0.421 Sum_probs=100.5
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCC--HHH
Q ss_conf 43055100238888987410466200000043232324123403567617--82337098834889789779987--899
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTL--LTV 304 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~--i~e 304 (341)
T Consensus 2 ~pitv~pd~tv~ea~~~M~~~~~~~~~vV~~~~~lvGIvT~~Di~r~~~~~~~~~~~~v~~vMt~~~itv~~~~~~~i~~ 81 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFT 81 (115)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCCCHHH
T ss_conf 69996991999999999998399469999379929999986999999985998134898896368967983899726999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999999679958999806984899985888974
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
T Consensus 82 a~~~M~~~~i~~lpVvd~~g~lvGiit~~Dilk 114 (115)
T cd04620 82 ALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEEEHHHCCC
T ss_conf 999987559528999957997999999256232