HHsearch alignment for GI: 255764505 and conserved domain: cd04622
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.83 E-value=7.7e-20 Score=164.77 Aligned_cols=109 Identities=31% Similarity=0.465 Sum_probs=100.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCH-HHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 43055100238888987410466200000043232324123403-5676178--23370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI-FRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDl-rR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
T Consensus 2 ~~vti~~~~tl~~a~~~m~~~~~~~v~V~d-~~~~vGiiT~~Di~~~~~~~~~~~~~~~v~~iM~~~~i~v~~~~~l~~a 80 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHHHHHHHCCCCHHHCCHHHHHCCCCEEEECCCCHHHH
T ss_conf 977968939899999999972998899998-9999999963278899997399820077678641576799889987999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 999996799589998069848999858889743
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 81 ~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra 113 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 999985796589999089989999997995477