HHsearch alignment for GI: 255764505 and conserved domain: cd04624
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.84 E-value=2.3e-20 Score=168.58 Aligned_cols=110 Identities=27% Similarity=0.437 Sum_probs=104.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC-CCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 4305510023888898741046620000004323232412340356761782-337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL-NTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~-~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
T Consensus 2 ~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~lvGiiT~~Di~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~a~~ 81 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCHHHHHH
T ss_conf 97897893959999999986299889999399829999982045889864874344204565167167879998999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 82 ~m~~~~~~~l~Vvd~~g~lvGiit~~Dilke 112 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112 (112)
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 9997498399899899999999980772569