HHsearch alignment for GI: 255764505 and conserved domain: cd04632
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.83 E-value=9.5e-20 Score=164.10 Aligned_cols=111 Identities=29% Similarity=0.354 Sum_probs=101.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC---------------CCCCCHHHHCCCC
Q ss_conf 5430551002388889874104662000000432323241234035676178---------------2337098834889
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD---------------LNTLSVEDVMIKN 292 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~---------------~~~~~v~~iMt~~ 292 (341)
T Consensus 1 kdvvTv~~~~~l~~a~~lm~~~~i~~lPVvd~~g~lvGiiT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~~ 80 (128)
T cd04632 1 EDVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCHHCCHHHHCCHHHHHHCCCHHHHCCCC
T ss_conf 99869899592999999999839977999968997899998899999885321010112210012234067999966799
Q ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEE--ECCCEEEEEEEHHHHHHC
Q ss_conf 7897799878999999996799589998--069848999858889743
Q gi|255764505|r 293 PKVILEDTLLTVAMQLLRQHNISVLMVV--DDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 293 p~~I~~d~~i~eAl~lM~~~kI~~LpVV--D~~~~lvGiIt~~DLlka 338 (341)
T Consensus 81 vitv~~~~~i~~a~~~M~~~~i~~lpVv~~dd~~~lvGIiT~~DilrA 128 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 879999293999999999779978966847899989999996996469