HHsearch alignment for GI: 255764505 and conserved domain: cd04635

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.83  E-value=9.7e-20  Score=164.03  Aligned_cols=110  Identities=26%  Similarity=0.354  Sum_probs=100.8

Q ss_pred             CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH-----------CCCCCCCHHHHCCCCCEEEC
Q ss_conf             4305510023888898741046620000004323232412340356761-----------78233709883488978977
Q gi|255764505|r  229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH-----------KDLNTLSVEDVMIKNPKVIL  297 (341)
Q Consensus       229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~-----------~~~~~~~v~~iMt~~p~~I~  297 (341)
T Consensus         2 ~vitv~~d~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~itv~   81 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT   81 (122)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHCCCCCEEEC
T ss_conf             99996892979999999997199489999189829999998998765540012003443145346899996868987998


Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf             99878999999996799589998069848999858889743
Q gi|255764505|r  298 EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF  338 (341)
Q Consensus       298 ~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka  338 (341)
T Consensus        82 ~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiIt~~DilrA  122 (122)
T cd04635          82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             96939999998898099889899379989999997996369