HHsearch alignment for GI: 255764505 and conserved domain: cd04637
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=3.8e-19 Score=159.73 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=99.6
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC------------CCCCCHHHHCCCCCEEE
Q ss_conf 430551002388889874104662000000432323241234035676178------------23370988348897897
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD------------LNTLSVEDVMIKNPKVI 296 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~------------~~~~~v~~iMt~~p~~I 296 (341)
T Consensus 2 ~viTv~p~~tl~~a~~~m~~~~i~~lpVvd-~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~itv 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE-DNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHHCCCCCHHHHCCCHHHCCCHHHHCCCCCEEE
T ss_conf 749988969699999999874998899998-9999999888999987500245310221121230689999463898399
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 799878999999996799589998069848999858889743
Q gi|255764505|r 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 297 ~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 81 ~~~~~l~~a~~~m~~~~i~~lPVvd~~~~lvGiIT~~Diik~ 122 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 999849999999997493089999689989999996883275