HHsearch alignment for GI: 255764505 and conserved domain: cd04641
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.75 E-value=1.5e-17 Score=148.15 Aligned_cols=110 Identities=25% Similarity=0.445 Sum_probs=96.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC---CCCCHHHHC------CCCCEEECCC
Q ss_conf 4305510023888898741046620000004323232412340356761782---337098834------8897897799
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL---NTLSVEDVM------IKNPKVILED 299 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~---~~~~v~~iM------t~~p~~I~~d 299 (341)
T Consensus 2 ~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~g~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEECCC
T ss_conf 97898998999999999998098669998789969899759999988751554434420877642155554785698999
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 878999999996799589998069848999858889743
Q gi|255764505|r 300 TLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 300 ~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
T Consensus 82 ~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilry 120 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 979999999998498579899899979999986882383