HHsearch alignment for GI: 255764505 and conserved domain: cd04643

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81  E-value=2.1e-19  Score=161.59  Aligned_cols=109  Identities=28%  Similarity=0.405  Sum_probs=100.7

Q ss_pred             CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC-------CCCCCCHHHHCCCCCEEECCCC
Q ss_conf             543055100238888987410466200000043232324123403567617-------8233709883488978977998
Q gi|255764505|r  228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-------DLNTLSVEDVMIKNPKVILEDT  300 (341)
Q Consensus       228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~-------~~~~~~v~~iMt~~p~~I~~d~  300 (341)
T Consensus         1 k~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~gklvGiit~~Di~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv~~~~   80 (116)
T cd04643           1 EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCHHHHCCCCHHHHHCCCCEEEECCC
T ss_conf             97699999492999999999749987989869994999988999999874365322023116687795156988990799


Q ss_pred             CHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf             78999999996799589998069848999858889743
Q gi|255764505|r  301 LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF  338 (341)
Q Consensus       301 ~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka  338 (341)
T Consensus        81 ~i~~~~~~m~~~~~--lpVVD~~~~lvGIITr~DilkA  116 (116)
T cd04643          81 DIEEILHLLIDQPF--LPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             CHHHHHHHHHHCCE--EEEEECCCEEEEEEEHHHHHCC
T ss_conf             99999999987898--9999459999999992795579