HHsearch alignment for GI: 255764505 and conserved domain: cd04802
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=7.8e-07 Score=70.09 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=49.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
T Consensus 58 ~~v~~iM~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiIt~~Dil~ 111 (112)
T cd04802 58 VPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIVM 111 (112)
T ss_pred CCHHHHHCC--CCEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf 899997234--855994798699999987871985899998-999999998067105