Query gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 341
No_of_seqs 281 out of 5716
Neff 6.3
Searched_HMMs 39220
Date Sun May 29 23:53:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764505.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11543 gutQ D-arabinose 5-ph 100.0 0 0 753.1 32.1 319 19-341 1-321 (321)
2 PRK10892 D-arabinose 5-phospha 100.0 0 0 738.8 31.9 317 20-341 7-326 (326)
3 TIGR00393 kpsF sugar isomerase 100.0 0 0 679.0 20.9 267 65-331 1-272 (272)
4 COG0794 GutQ Predicted sugar p 100.0 0 0 409.4 18.9 200 24-226 2-202 (202)
5 TIGR03127 RuMP_HxlB 6-phospho 100.0 9E-35 2.3E-39 273.5 17.2 168 34-210 4-177 (179)
6 cd05005 SIS_PHI Hexulose-6-pho 100.0 7.2E-34 1.8E-38 266.9 18.0 170 30-208 3-178 (179)
7 cd05014 SIS_Kpsf KpsF-like pro 100.0 1.7E-32 4.4E-37 256.9 12.2 128 65-192 1-128 (128)
8 PRK11337 DNA-binding transcrip 99.9 2.4E-25 6.2E-30 204.8 17.6 172 20-197 101-272 (293)
9 COG1737 RpiR Transcriptional r 99.9 6.7E-25 1.7E-29 201.6 19.8 193 5-203 65-267 (281)
10 PRK11302 DNA-binding transcrip 99.9 1E-24 2.6E-29 200.2 18.7 187 5-198 63-259 (284)
11 PRK11557 putative DNA-binding 99.9 2.2E-24 5.7E-29 197.8 19.0 187 5-197 63-263 (282)
12 cd04604 CBS_pair_KpsF_GutQ_ass 99.9 5E-23 1.3E-27 187.9 11.5 112 227-338 1-114 (114)
13 cd04619 CBS_pair_6 The CBS dom 99.9 5E-22 1.3E-26 180.7 11.3 109 229-337 2-113 (114)
14 pfam01380 SIS SIS domain. SIS 99.9 4.9E-22 1.3E-26 180.8 10.6 129 60-192 2-131 (131)
15 cd04607 CBS_pair_NTP_transfera 99.9 3.3E-21 8.3E-26 174.8 11.4 107 232-338 6-113 (113)
16 cd04617 CBS_pair_4 The CBS dom 99.9 2.2E-21 5.7E-26 175.9 9.8 106 232-337 5-117 (118)
17 cd04626 CBS_pair_13 The CBS do 99.9 6.4E-21 1.6E-25 172.6 11.9 109 229-338 2-111 (111)
18 cd04620 CBS_pair_7 The CBS dom 99.9 6.3E-21 1.6E-25 172.7 11.2 109 229-337 2-114 (115)
19 cd04625 CBS_pair_12 The CBS do 99.8 2E-20 5.1E-25 169.1 11.4 109 228-338 1-112 (112)
20 cd04588 CBS_pair_CAP-ED_DUF294 99.8 2.4E-20 6.2E-25 168.4 11.7 109 229-338 2-110 (110)
21 cd04615 CBS_pair_2 The CBS dom 99.8 2.7E-20 7E-25 168.0 11.6 107 232-338 5-113 (113)
22 cd04593 CBS_pair_EriC_assoc_ba 99.8 1.7E-20 4.4E-25 169.5 10.4 109 230-338 3-115 (115)
23 cd04624 CBS_pair_11 The CBS do 99.8 2.3E-20 5.9E-25 168.6 10.5 110 229-338 2-112 (112)
24 cd05013 SIS_RpiR RpiR-like pro 99.8 1E-19 2.6E-24 163.8 13.2 137 52-191 2-138 (139)
25 cd04621 CBS_pair_8 The CBS dom 99.8 6.8E-20 1.7E-24 165.2 11.9 110 228-338 1-135 (135)
26 cd04622 CBS_pair_9 The CBS dom 99.8 7.7E-20 2E-24 164.8 12.1 109 229-338 2-113 (113)
27 cd04632 CBS_pair_19 The CBS do 99.8 9.5E-20 2.4E-24 164.1 11.9 111 228-338 1-128 (128)
28 cd04635 CBS_pair_22 The CBS do 99.8 9.7E-20 2.5E-24 164.0 11.9 110 229-338 2-122 (122)
29 cd04623 CBS_pair_10 The CBS do 99.8 9.4E-20 2.4E-24 164.1 11.0 109 229-338 2-113 (113)
30 cd04587 CBS_pair_CAP-ED_DUF294 99.8 8.1E-20 2.1E-24 164.6 10.2 107 231-338 4-113 (113)
31 cd04613 CBS_pair_SpoIVFB_EriC_ 99.8 1.3E-19 3.2E-24 163.2 11.0 110 229-338 2-114 (114)
32 cd04643 CBS_pair_30 The CBS do 99.8 2.1E-19 5.4E-24 161.6 11.4 109 228-338 1-116 (116)
33 cd04636 CBS_pair_23 The CBS do 99.8 3.4E-19 8.6E-24 160.1 12.1 109 229-338 2-132 (132)
34 cd04629 CBS_pair_16 The CBS do 99.8 2.6E-19 6.6E-24 160.9 11.3 109 229-338 2-114 (114)
35 cd04586 CBS_pair_BON_assoc Thi 99.8 4E-19 1E-23 159.5 12.3 110 228-338 2-135 (135)
36 cd04637 CBS_pair_24 The CBS do 99.8 3.8E-19 9.7E-24 159.7 11.7 109 229-338 2-122 (122)
37 cd04600 CBS_pair_HPP_assoc Thi 99.8 5.3E-19 1.3E-23 158.7 12.0 111 228-338 2-124 (124)
38 cd04638 CBS_pair_25 The CBS do 99.8 3.6E-19 9.1E-24 159.9 11.2 106 228-338 1-106 (106)
39 cd04611 CBS_pair_PAS_GGDEF_DUF 99.8 4.2E-19 1.1E-23 159.4 11.5 109 229-338 2-111 (111)
40 cd04605 CBS_pair_MET2_assoc Th 99.8 2E-19 5E-24 161.8 9.2 108 228-337 2-109 (110)
41 cd04596 CBS_pair_DRTGG_assoc T 99.8 3.7E-19 9.5E-24 159.8 10.5 107 228-338 2-108 (108)
42 cd04584 CBS_pair_ACT_assoc Thi 99.8 5.3E-19 1.3E-23 158.7 11.1 109 229-338 2-121 (121)
43 cd04585 CBS_pair_ACT_assoc2 Th 99.8 9.9E-19 2.5E-23 156.7 12.2 109 229-338 2-122 (122)
44 cd04631 CBS_pair_18 The CBS do 99.8 1E-18 2.6E-23 156.6 12.1 110 229-338 2-125 (125)
45 cd04639 CBS_pair_26 The CBS do 99.8 1.4E-18 3.6E-23 155.6 11.7 109 229-337 2-110 (111)
46 cd04589 CBS_pair_CAP-ED_DUF294 99.8 1.7E-18 4.3E-23 155.0 11.9 106 230-337 3-110 (111)
47 PRK00331 glucosamine--fructose 99.8 2.1E-17 5.4E-22 147.0 17.4 226 26-273 253-481 (604)
48 cd04594 CBS_pair_EriC_assoc_ar 99.8 1E-18 2.7E-23 156.5 10.6 100 232-338 5-104 (104)
49 cd04599 CBS_pair_GGDEF_assoc2 99.8 1.8E-18 4.6E-23 154.8 11.2 104 229-338 2-105 (105)
50 cd04595 CBS_pair_DHH_polyA_Pol 99.8 8.2E-19 2.1E-23 157.3 9.4 108 229-338 3-110 (110)
51 cd04614 CBS_pair_1 The CBS dom 99.8 1.1E-18 2.8E-23 156.3 9.8 94 229-337 2-95 (96)
52 cd04803 CBS_pair_15 The CBS do 99.8 1.7E-18 4.4E-23 155.0 10.7 108 230-337 3-121 (122)
53 cd04630 CBS_pair_17 The CBS do 99.8 4.5E-18 1.1E-22 151.9 11.8 109 229-338 2-114 (114)
54 cd04610 CBS_pair_ParBc_assoc T 99.8 4.5E-18 1.1E-22 151.9 10.8 106 228-338 2-107 (107)
55 cd04800 CBS_pair_CAP-ED_DUF294 99.8 6.6E-18 1.7E-22 150.7 11.2 108 229-338 2-111 (111)
56 cd04612 CBS_pair_SpoIVFB_EriC_ 99.8 2.8E-18 7.3E-23 153.4 9.2 109 229-338 2-111 (111)
57 cd04582 CBS_pair_ABC_OpuCA_ass 99.8 6E-18 1.5E-22 151.0 10.8 104 229-337 2-105 (106)
58 PTZ00295 glucosamine-fructose- 99.8 1.2E-16 3.1E-21 141.4 17.3 226 27-272 332-567 (691)
59 TIGR01135 glmS glucosamine--fr 99.8 1.6E-17 4E-22 147.9 12.5 272 28-320 264-564 (628)
60 cd04601 CBS_pair_IMPDH This cd 99.8 5.2E-18 1.3E-22 151.4 10.0 107 229-338 3-110 (110)
61 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.8 9.7E-18 2.5E-22 149.5 11.1 124 66-193 1-125 (126)
62 cd04802 CBS_pair_3 The CBS dom 99.8 1.2E-17 3E-22 148.9 11.5 107 229-337 2-111 (112)
63 cd04583 CBS_pair_ABC_OpuCA_ass 99.8 5.5E-18 1.4E-22 151.3 9.5 107 229-338 3-109 (109)
64 cd04641 CBS_pair_28 The CBS do 99.8 1.5E-17 3.8E-22 148.2 11.3 110 229-338 2-120 (120)
65 cd04633 CBS_pair_20 The CBS do 99.7 9.6E-18 2.5E-22 149.5 10.1 107 229-337 2-120 (121)
66 cd04634 CBS_pair_21 The CBS do 99.7 2.1E-17 5.3E-22 147.1 11.4 107 229-337 2-142 (143)
67 cd04642 CBS_pair_29 The CBS do 99.7 1.6E-17 4E-22 148.0 10.3 109 229-337 2-125 (126)
68 cd04801 CBS_pair_M50_like This 99.7 2.9E-17 7.4E-22 146.0 11.6 110 229-338 2-114 (114)
69 PRK01862 putative voltage-gate 99.7 1.4E-16 3.5E-21 141.1 14.0 121 216-338 454-578 (583)
70 cd04603 CBS_pair_KefB_assoc Th 99.7 2.8E-17 7.2E-22 146.1 9.3 107 232-338 5-111 (111)
71 COG2524 Predicted transcriptio 99.7 6.5E-17 1.7E-21 143.5 10.6 118 218-338 172-289 (294)
72 cd04627 CBS_pair_14 The CBS do 99.7 1E-16 2.6E-21 142.0 10.7 105 231-335 4-120 (123)
73 cd04602 CBS_pair_IMPDH_2 This 99.7 7.9E-17 2E-21 142.8 9.1 105 230-337 4-113 (114)
74 COG0449 GlmS Glucosamine 6-pho 99.7 4.9E-15 1.3E-19 129.8 16.0 195 59-272 279-475 (597)
75 COG2905 Predicted signal-trans 99.7 8.9E-16 2.3E-20 135.2 12.2 141 191-338 125-268 (610)
76 cd04598 CBS_pair_GGDEF_assoc T 99.7 4.7E-16 1.2E-20 137.2 10.5 109 229-338 2-119 (119)
77 cd05710 SIS_1 A subgroup of th 99.7 6.7E-16 1.7E-20 136.1 10.3 114 66-184 1-115 (120)
78 cd04609 CBS_pair_PALP_assoc2 T 99.7 4.2E-16 1.1E-20 137.6 9.1 106 229-337 2-109 (110)
79 COG2222 AgaS Predicted phospho 99.7 4.6E-15 1.2E-19 130.0 14.3 148 52-205 26-175 (340)
80 TIGR01302 IMP_dehydrog inosine 99.7 7.7E-16 2E-20 135.6 9.6 156 175-339 36-212 (476)
81 cd04606 CBS_pair_Mg_transporte 99.7 9.9E-16 2.5E-20 134.9 9.8 102 233-338 2-108 (109)
82 cd04640 CBS_pair_27 The CBS do 99.6 3.1E-15 7.9E-20 131.2 10.7 107 232-338 5-126 (126)
83 PRK07807 inositol-5-monophosph 99.6 9.6E-16 2.5E-20 134.9 8.0 143 186-339 57-204 (479)
84 PRK07107 inositol-5-monophosph 99.6 2.8E-15 7.1E-20 131.6 9.7 144 186-338 64-218 (497)
85 cd05006 SIS_GmhA Phosphoheptos 99.6 3.5E-14 8.9E-19 123.6 13.9 135 50-192 16-174 (177)
86 PRK13937 phosphoheptose isomer 99.6 2.4E-13 6E-18 117.5 17.5 158 18-191 1-182 (192)
87 PRK13936 phosphoheptose isomer 99.6 2.9E-13 7.4E-18 116.9 16.7 166 19-201 3-195 (197)
88 PRK00414 gmhA phosphoheptose i 99.6 2.1E-13 5.3E-18 118.0 15.9 135 49-192 26-185 (192)
89 PRK05441 murQ N-acetylmuramic 99.6 2.1E-13 5.4E-18 117.9 15.4 178 23-203 19-218 (273)
90 cd04795 SIS SIS domain. SIS (S 99.6 6.4E-15 1.6E-19 129.0 7.5 79 67-145 1-81 (87)
91 PRK13938 phosphoheptose isomer 99.6 4E-13 1E-17 115.9 15.9 141 51-200 29-193 (196)
92 PRK12570 N-acetylmuramic acid- 99.6 1.2E-13 3.1E-18 119.7 13.1 192 7-201 1-216 (296)
93 cd05007 SIS_Etherase N-acetylm 99.6 4.8E-13 1.2E-17 115.3 15.9 176 25-203 12-209 (257)
94 PRK05567 inositol-5'-monophosp 99.5 2E-14 5E-19 125.4 8.1 145 185-339 53-204 (486)
95 PRK11382 frlB fructoselysine-6 99.5 1.2E-13 3.1E-18 119.6 12.1 112 52-166 38-154 (347)
96 cd02205 CBS_pair The CBS domai 99.5 5.2E-14 1.3E-18 122.3 9.5 110 229-338 2-113 (113)
97 PRK10886 DnaA initiator-associ 99.5 1.1E-12 2.9E-17 112.6 16.2 164 20-200 2-192 (196)
98 PTZ00314 inosine-5'-monophosph 99.5 7.7E-14 2E-18 121.1 9.8 189 109-339 17-214 (499)
99 cd04590 CBS_pair_CorC_HlyC_ass 99.5 9.3E-14 2.4E-18 120.5 9.9 109 229-338 2-111 (111)
100 TIGR00274 TIGR00274 glucokinas 99.5 3E-13 7.6E-18 116.8 12.5 166 27-198 21-212 (291)
101 COG2103 Predicted sugar phosph 99.5 1.3E-13 3.4E-18 119.4 10.4 189 5-196 1-213 (298)
102 COG4109 Predicted transcriptio 99.5 1.4E-13 3.6E-18 119.2 10.5 190 109-338 112-304 (432)
103 TIGR00441 gmhA phosphoheptose 99.5 6.1E-13 1.6E-17 114.5 11.9 143 41-191 12-183 (186)
104 COG3448 CBS-domain-containing 99.5 1.8E-13 4.5E-18 118.5 8.3 143 194-338 216-370 (382)
105 cd04591 CBS_pair_EriC_assoc_eu 99.5 6.5E-13 1.7E-17 114.3 11.0 100 229-338 3-105 (105)
106 COG3620 Predicted transcriptio 99.5 4E-13 1E-17 115.9 9.6 160 148-338 20-182 (187)
107 cd04592 CBS_pair_EriC_assoc_eu 99.5 1.5E-13 3.7E-18 119.1 6.7 95 229-323 2-118 (133)
108 COG0279 GmhA Phosphoheptose is 99.4 3.1E-12 7.9E-17 109.4 13.0 117 52-169 26-167 (176)
109 cd04608 CBS_pair_PALP_assoc Th 99.4 6.1E-13 1.6E-17 114.5 8.6 109 229-337 3-122 (124)
110 TIGR03520 GldE gliding motilit 99.4 9.8E-13 2.5E-17 113.0 9.1 140 194-338 169-309 (408)
111 COG0517 FOG: CBS domain [Gener 99.4 4.5E-12 1.2E-16 108.2 11.1 113 221-336 2-117 (117)
112 PRK02947 hypothetical protein; 99.4 2.1E-11 5.4E-16 103.3 14.2 160 51-214 25-231 (247)
113 PRK11573 hypothetical protein; 99.3 1.2E-11 3.2E-16 105.0 10.6 138 198-338 169-309 (413)
114 cd05017 SIS_PGI_PMI_1 The memb 99.3 1.9E-11 4.7E-16 103.7 9.5 106 66-179 1-106 (119)
115 COG1253 TlyC Hemolysins and re 99.3 2.4E-11 6.1E-16 102.9 9.3 137 199-338 189-326 (429)
116 COG2239 MgtE Mg/Co/Ni transpor 99.3 4E-11 1E-15 101.3 10.1 120 205-337 126-250 (451)
117 PRK10070 glycine betaine trans 99.3 7.5E-11 1.9E-15 99.3 10.9 182 125-338 201-391 (400)
118 PRK08674 bifunctional phosphog 99.3 7.9E-11 2E-15 99.2 10.6 104 66-180 36-142 (328)
119 KOG1268 consensus 99.2 2E-10 5E-15 96.3 11.3 170 17-193 304-481 (670)
120 pfam00478 IMPDH IMP dehydrogen 99.2 1.9E-11 4.8E-16 103.7 5.7 145 186-339 49-199 (467)
121 COG4821 Uncharacterized protei 99.2 4.5E-10 1.1E-14 93.7 12.5 158 54-215 29-229 (243)
122 TIGR01186 proV glycine betaine 99.2 2E-10 5.1E-15 96.2 9.3 117 219-338 243-360 (372)
123 COG4536 CorB Putative Mg2+ and 99.1 2.9E-10 7.4E-15 95.1 7.3 122 217-339 199-323 (423)
124 TIGR02128 G6PI_arch bifunction 99.1 6.4E-10 1.6E-14 92.6 8.8 187 64-274 28-250 (338)
125 LOAD_sis consensus 99.0 3.7E-09 9.5E-14 87.0 8.4 86 65-151 3-90 (90)
126 cd04597 CBS_pair_DRTGG_assoc2 98.9 4.2E-09 1.1E-13 86.6 6.7 56 282-337 57-112 (113)
127 KOG1764 consensus 98.9 1.6E-08 4.1E-13 82.3 8.6 110 229-338 238-357 (381)
128 COG4535 CorC Putative Mg2+ and 98.8 1.8E-08 4.6E-13 82.0 7.7 127 211-338 60-187 (293)
129 KOG2550 consensus 98.7 4.4E-08 1.1E-12 79.2 6.7 120 217-339 104-227 (503)
130 cd04635 CBS_pair_22 The CBS do 98.7 8.2E-08 2.1E-12 77.2 7.0 56 218-275 67-122 (122)
131 PRK00331 glucosamine--fructose 98.7 4.7E-06 1.2E-10 64.4 15.9 144 51-203 448-593 (604)
132 cd04600 CBS_pair_HPP_assoc Thi 98.6 1E-07 2.6E-12 76.5 7.2 56 218-275 69-124 (124)
133 cd04632 CBS_pair_19 The CBS do 98.6 1.6E-07 4E-12 75.1 7.0 61 213-275 65-128 (128)
134 cd04629 CBS_pair_16 The CBS do 98.6 1.7E-07 4.2E-12 75.0 7.0 55 218-275 60-114 (114)
135 smart00116 CBS Domain in cysta 98.6 1.7E-07 4.3E-12 75.0 6.8 47 292-338 1-47 (49)
136 cd04586 CBS_pair_BON_assoc Thi 98.6 1.9E-07 4.9E-12 74.5 7.1 55 218-275 81-135 (135)
137 cd04638 CBS_pair_25 The CBS do 98.6 2.4E-07 6.2E-12 73.8 7.1 55 218-275 52-106 (106)
138 cd04608 CBS_pair_PALP_assoc Th 98.6 2.1E-07 5.5E-12 74.2 6.8 48 291-338 2-49 (124)
139 cd04617 CBS_pair_4 The CBS dom 98.6 2.5E-07 6.3E-12 73.7 6.9 74 199-274 40-117 (118)
140 cd04641 CBS_pair_28 The CBS do 98.5 2.9E-07 7.4E-12 73.2 7.0 53 221-275 68-120 (120)
141 cd04636 CBS_pair_23 The CBS do 98.5 3E-07 7.7E-12 73.1 6.9 55 218-275 78-132 (132)
142 cd04584 CBS_pair_ACT_assoc Thi 98.5 3.5E-07 8.9E-12 72.6 7.0 54 218-274 67-120 (121)
143 cd04582 CBS_pair_ABC_OpuCA_ass 98.5 4.1E-07 1E-11 72.1 7.0 54 219-274 52-105 (106)
144 cd04621 CBS_pair_8 The CBS dom 98.5 4.5E-07 1.1E-11 71.8 7.1 54 218-274 81-134 (135)
145 COG2524 Predicted transcriptio 98.5 1.7E-07 4.3E-12 75.0 4.9 74 199-277 218-291 (294)
146 cd04605 CBS_pair_MET2_assoc Th 98.5 4E-07 1E-11 72.2 6.7 55 218-274 55-109 (110)
147 cd04594 CBS_pair_EriC_assoc_ar 98.5 4.5E-07 1.2E-11 71.8 7.0 55 218-275 50-104 (104)
148 cd04643 CBS_pair_30 The CBS do 98.5 4.5E-07 1.2E-11 71.8 7.0 54 218-275 63-116 (116)
149 cd04619 CBS_pair_6 The CBS dom 98.5 1.4E-07 3.5E-12 75.5 4.3 55 218-274 59-113 (114)
150 cd04610 CBS_pair_ParBc_assoc T 98.5 1E-07 2.6E-12 76.5 3.2 56 218-275 52-107 (107)
151 cd04597 CBS_pair_DRTGG_assoc2 98.5 1.1E-07 2.9E-12 76.2 3.5 68 204-273 40-111 (113)
152 cd04583 CBS_pair_ABC_OpuCA_ass 98.5 5.3E-07 1.4E-11 71.3 6.9 55 218-274 54-108 (109)
153 cd04640 CBS_pair_27 The CBS do 98.5 2.5E-07 6.3E-12 73.7 5.1 57 218-274 64-125 (126)
154 cd04637 CBS_pair_24 The CBS do 98.5 1.3E-07 3.3E-12 75.8 3.7 56 218-275 67-122 (122)
155 cd04634 CBS_pair_21 The CBS do 98.5 6E-07 1.5E-11 70.9 7.0 54 218-274 89-142 (143)
156 cd04593 CBS_pair_EriC_assoc_ba 98.5 6.3E-07 1.6E-11 70.8 6.9 56 218-275 58-115 (115)
157 TIGR02815 agaS_fam putative su 98.5 5.1E-06 1.3E-10 64.1 11.5 242 63-309 43-332 (374)
158 KOG0474 consensus 98.4 4.3E-07 1.1E-11 72.0 5.9 132 204-339 570-746 (762)
159 cd04615 CBS_pair_2 The CBS dom 98.4 7.2E-07 1.8E-11 70.3 7.0 55 218-274 58-112 (113)
160 cd04585 CBS_pair_ACT_assoc2 Th 98.4 2.5E-07 6.4E-12 73.7 4.6 56 218-275 67-122 (122)
161 cd04623 CBS_pair_10 The CBS do 98.4 7.1E-07 1.8E-11 70.4 6.9 55 218-275 59-113 (113)
162 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 8.4E-07 2.1E-11 69.9 7.0 56 218-275 58-114 (114)
163 cd04603 CBS_pair_KefB_assoc Th 98.4 2.2E-07 5.6E-12 74.1 3.9 58 216-275 54-111 (111)
164 cd04620 CBS_pair_7 The CBS dom 98.4 9E-07 2.3E-11 69.6 7.0 55 218-274 58-114 (115)
165 cd04622 CBS_pair_9 The CBS dom 98.4 2.7E-07 6.9E-12 73.4 4.4 56 218-275 58-113 (113)
166 cd04625 CBS_pair_12 The CBS do 98.4 2.8E-07 7.2E-12 73.3 4.3 55 218-275 58-112 (112)
167 COG3448 CBS-domain-containing 98.4 4.9E-07 1.3E-11 71.5 5.4 59 279-337 241-299 (382)
168 cd04633 CBS_pair_20 The CBS do 98.4 1.1E-06 2.9E-11 68.9 7.0 55 218-275 67-121 (121)
169 cd04803 CBS_pair_15 The CBS do 98.4 1.1E-06 2.9E-11 68.9 6.9 56 217-274 66-121 (122)
170 cd04596 CBS_pair_DRTGG_assoc T 98.4 1.3E-06 3.2E-11 68.6 7.1 56 218-275 53-108 (108)
171 cd05009 SIS_GlmS_GlmD_2 SIS (S 98.4 6.2E-06 1.6E-10 63.5 10.6 142 53-205 3-146 (153)
172 cd04624 CBS_pair_11 The CBS do 98.4 1.1E-06 2.8E-11 69.0 6.4 55 218-274 57-111 (112)
173 cd04587 CBS_pair_CAP-ED_DUF294 98.4 2.9E-07 7.4E-12 73.2 3.2 56 218-275 58-113 (113)
174 cd04614 CBS_pair_1 The CBS dom 98.3 9.3E-07 2.4E-11 69.5 5.7 55 219-274 41-95 (96)
175 cd04631 CBS_pair_18 The CBS do 98.3 3.6E-07 9.1E-12 72.6 3.5 56 218-275 70-125 (125)
176 cd04599 CBS_pair_GGDEF_assoc2 98.3 1.6E-06 4.1E-11 67.8 6.7 53 219-274 52-104 (105)
177 cd04639 CBS_pair_26 The CBS do 98.3 1.9E-06 4.8E-11 67.3 7.0 55 218-274 56-110 (111)
178 cd04602 CBS_pair_IMPDH_2 This 98.3 2.1E-06 5.3E-11 67.0 7.1 58 218-275 57-114 (114)
179 cd04601 CBS_pair_IMPDH This cd 98.3 2.2E-06 5.6E-11 66.8 7.1 56 218-274 54-109 (110)
180 pfam00571 CBS CBS domain. CBS 98.3 1.8E-06 4.5E-11 67.5 6.5 55 285-339 1-55 (57)
181 cd04588 CBS_pair_CAP-ED_DUF294 98.3 5E-07 1.3E-11 71.5 3.7 56 218-275 55-110 (110)
182 cd04642 CBS_pair_29 The CBS do 98.3 2.3E-06 5.9E-11 66.7 7.0 55 218-274 71-125 (126)
183 cd04618 CBS_pair_5 The CBS dom 98.3 2.6E-06 6.6E-11 66.3 7.2 94 229-337 2-97 (98)
184 cd04627 CBS_pair_14 The CBS do 98.3 2.6E-06 6.7E-11 66.2 6.9 56 216-273 66-121 (123)
185 cd04609 CBS_pair_PALP_assoc2 T 98.3 2.8E-06 7E-11 66.1 7.0 54 218-275 57-110 (110)
186 KOG1764 consensus 98.3 2.1E-06 5.4E-11 66.9 6.3 160 177-337 110-283 (381)
187 cd04802 CBS_pair_3 The CBS dom 98.3 7.8E-07 2E-11 70.1 4.1 54 218-274 58-111 (112)
188 cd04612 CBS_pair_SpoIVFB_EriC_ 98.3 4.8E-07 1.2E-11 71.6 3.0 56 218-275 56-111 (111)
189 cd04607 CBS_pair_NTP_transfera 98.3 2.8E-06 7.1E-11 66.1 6.7 54 218-273 58-111 (113)
190 cd04595 CBS_pair_DHH_polyA_Pol 98.3 3.7E-06 9.5E-11 65.1 7.2 54 218-274 56-109 (110)
191 COG3620 Predicted transcriptio 98.3 1.6E-06 4.1E-11 67.8 5.3 54 218-276 130-183 (187)
192 cd04626 CBS_pair_13 The CBS do 98.2 3.8E-06 9.6E-11 65.1 6.9 53 218-273 57-109 (111)
193 TIGR01137 cysta_beta cystathio 98.2 6.1E-06 1.5E-10 63.6 7.9 116 218-337 366-524 (527)
194 cd04630 CBS_pair_17 The CBS do 98.2 1.1E-06 2.9E-11 68.9 3.9 55 218-275 60-114 (114)
195 cd04611 CBS_pair_PAS_GGDEF_DUF 98.2 1.1E-06 2.9E-11 68.9 3.9 56 218-275 56-111 (111)
196 cd04589 CBS_pair_CAP-ED_DUF294 98.2 2.2E-06 5.7E-11 66.8 5.4 54 218-274 57-110 (111)
197 cd04801 CBS_pair_M50_like This 98.2 1.2E-06 3.1E-11 68.7 3.9 102 145-274 5-113 (114)
198 TIGR01303 IMP_DH_rel_1 IMP deh 98.2 3E-06 7.6E-11 65.8 5.8 149 181-340 51-204 (476)
199 PRK01862 putative voltage-gate 98.2 7.7E-06 2E-10 62.9 7.6 58 280-337 453-510 (583)
200 cd04604 CBS_pair_KpsF_GutQ_ass 98.2 1.5E-06 3.9E-11 67.9 3.6 56 218-275 59-114 (114)
201 smart00116 CBS Domain in cysta 98.2 1.7E-06 4.3E-11 67.6 3.7 47 230-276 2-48 (49)
202 PRK03868 glucose-6-phosphate i 98.2 4.2E-05 1.1E-09 57.5 10.7 106 51-158 46-164 (409)
203 cd04800 CBS_pair_CAP-ED_DUF294 98.2 5.9E-06 1.5E-10 63.7 6.4 55 218-275 57-111 (111)
204 cd04592 CBS_pair_EriC_assoc_eu 98.1 7.7E-06 2E-10 62.8 6.8 47 292-338 2-48 (133)
205 TIGR01302 IMP_dehydrog inosine 98.1 2.6E-06 6.6E-11 66.3 3.5 182 101-321 55-258 (476)
206 cd04606 CBS_pair_Mg_transporte 98.1 2.5E-06 6.3E-11 66.4 3.4 55 218-274 53-107 (109)
207 PRK00973 glucose-6-phosphate i 98.0 4.8E-05 1.2E-09 57.1 8.1 108 50-158 59-188 (454)
208 PTZ00295 glucosamine-fructose- 98.0 0.0011 2.8E-08 47.1 15.0 143 50-203 534-680 (691)
209 COG0449 GlmS Glucosamine 6-pho 98.0 0.003 7.7E-08 44.0 17.0 143 50-203 442-586 (597)
210 cd04598 CBS_pair_GGDEF_assoc T 97.9 3.8E-05 9.7E-10 57.8 6.3 55 218-274 61-118 (119)
211 PRK07107 inositol-5-monophosph 97.9 1.2E-05 3.1E-10 61.4 3.6 138 126-276 64-219 (497)
212 COG0166 Pgi Glucose-6-phosphat 97.8 0.001 2.7E-08 47.3 12.9 95 63-158 79-186 (446)
213 cd02205 CBS_pair The CBS domai 97.8 7.6E-05 1.9E-09 55.6 6.9 53 220-274 60-112 (113)
214 PRK07807 inositol-5-monophosph 97.8 2.7E-05 6.8E-10 58.9 4.6 58 216-275 146-203 (479)
215 COG4175 ProV ABC-type proline/ 97.8 7.4E-05 1.9E-09 55.7 6.8 110 215-338 271-381 (386)
216 pfam00571 CBS CBS domain. CBS 97.8 2.4E-05 6E-10 59.3 4.1 56 220-277 1-56 (57)
217 COG2222 AgaS Predicted phospho 97.8 0.00067 1.7E-08 48.8 11.5 135 54-203 192-328 (340)
218 PRK09533 bifunctional transald 97.7 0.00038 9.6E-09 50.6 9.4 195 52-259 442-677 (950)
219 TIGR03415 ABC_choXWV_ATP choli 97.7 0.00013 3.4E-09 53.8 6.8 171 126-338 202-378 (382)
220 pfam10740 DUF2529 Protein of u 97.7 0.0014 3.6E-08 46.4 11.5 145 39-193 10-168 (172)
221 PRK05567 inositol-5'-monophosp 97.7 5.4E-05 1.4E-09 56.7 4.1 58 217-275 146-203 (486)
222 KOG0475 consensus 97.7 0.00044 1.1E-08 50.1 8.7 243 80-339 408-694 (696)
223 PRK11543 gutQ D-arabinose 5-ph 97.6 6.9E-05 1.8E-09 55.9 4.2 72 199-275 246-318 (321)
224 cd05015 SIS_PGI_1 Phosphogluco 97.6 0.00063 1.6E-08 48.9 8.8 90 66-156 22-126 (158)
225 COG2905 Predicted signal-trans 97.6 0.00012 3.2E-09 54.1 4.9 74 199-277 196-270 (610)
226 cd05010 SIS_AgaS_like AgaS-lik 97.5 0.0011 2.9E-08 47.1 9.5 139 67-215 1-146 (151)
227 cd04590 CBS_pair_CorC_HlyC_ass 97.5 0.00027 7E-09 51.6 6.1 53 218-273 57-109 (111)
228 PTZ00314 inosine-5'-monophosph 97.5 0.00023 6E-09 52.1 5.4 57 217-275 157-213 (499)
229 PRK10892 D-arabinose 5-phospha 97.4 0.00017 4.3E-09 53.1 4.2 71 199-275 251-323 (326)
230 PRK10070 glycine betaine trans 97.4 0.0028 7.2E-08 44.2 10.1 145 191-338 146-332 (400)
231 TIGR03520 GldE gliding motilit 97.3 0.00063 1.6E-08 48.9 5.7 88 219-310 256-349 (408)
232 COG1253 TlyC Hemolysins and re 97.2 0.0012 3E-08 47.0 6.6 81 229-310 280-367 (429)
233 pfam00342 PGI Phosphoglucose i 97.2 0.0076 1.9E-07 41.1 10.5 143 66-209 98-264 (483)
234 cd04591 CBS_pair_EriC_assoc_eu 97.2 0.00038 9.8E-09 50.5 3.4 50 223-275 56-105 (105)
235 PRK11382 frlB fructoselysine-6 97.1 0.035 8.9E-07 36.2 16.0 129 54-203 206-337 (347)
236 TIGR01186 proV glycine betaine 97.1 0.003 7.7E-08 44.0 7.4 80 259-338 205-300 (372)
237 COG0517 FOG: CBS domain [Gener 97.0 0.0024 6.1E-08 44.7 6.2 52 219-272 63-116 (117)
238 TIGR01137 cysta_beta cystathio 96.9 0.0013 3.4E-08 46.5 4.6 124 186-338 284-429 (527)
239 PRK11573 hypothetical protein; 96.9 0.0035 9E-08 43.5 6.5 90 221-310 255-350 (413)
240 COG4109 Predicted transcriptio 96.8 0.003 7.6E-08 44.0 5.6 58 218-277 249-306 (432)
241 TIGR00393 kpsF sugar isomerase 96.8 0.0015 3.9E-08 46.1 4.1 68 196-267 200-271 (272)
242 COG2239 MgtE Mg/Co/Ni transpor 96.7 0.0049 1.2E-07 42.5 6.0 57 218-276 196-252 (451)
243 pfam00478 IMPDH IMP dehydrogen 96.6 0.0013 3.4E-08 46.6 2.7 57 219-275 142-198 (467)
244 TIGR01135 glmS glucosamine--fr 96.6 0.082 2.1E-06 33.5 13.1 142 50-203 468-617 (628)
245 PRK00179 pgi glucose-6-phospha 96.6 0.028 7.2E-07 36.9 9.3 143 66-209 132-300 (525)
246 TIGR00400 mgtE magnesium trans 96.5 0.011 2.8E-07 39.9 6.5 126 200-338 124-255 (460)
247 TIGR03415 ABC_choXWV_ATP choli 96.0 0.0077 2E-07 41.0 3.8 56 219-278 326-381 (382)
248 KOG2118 consensus 95.4 0.042 1.1E-06 35.6 5.5 117 217-335 203-324 (498)
249 COG1125 OpuBA ABC-type proline 95.1 0.25 6.3E-06 30.1 8.7 227 109-338 24-308 (309)
250 COG4536 CorB Putative Mg2+ and 94.7 0.098 2.5E-06 33.0 5.7 87 223-309 270-361 (423)
251 KOG2550 consensus 93.3 0.081 2.1E-06 33.6 3.1 61 214-276 167-227 (503)
252 TIGR01303 IMP_DH_rel_1 IMP deh 91.4 0.34 8.6E-06 29.0 4.3 124 212-340 140-289 (476)
253 KOG0474 consensus 91.4 0.18 4.7E-06 31.0 3.0 77 197-275 662-745 (762)
254 cd04618 CBS_pair_5 The CBS dom 90.8 1.1 2.9E-05 25.2 6.5 43 230-272 52-95 (98)
255 KOG0476 consensus 90.0 0.29 7.3E-06 29.6 2.9 92 179-272 544-642 (931)
256 PRK00421 murC UDP-N-acetylmura 88.7 1.2 3E-05 25.1 5.3 12 66-77 10-21 (459)
257 cd02767 MopB_ydeP The MopB_yde 88.0 2.4 6E-05 22.9 11.0 145 52-211 86-270 (574)
258 COG4535 CorC Putative Mg2+ and 87.9 0.27 6.8E-06 29.8 1.5 89 219-311 134-229 (293)
259 KOG0476 consensus 87.2 0.31 7.9E-06 29.3 1.6 53 283-335 588-642 (931)
260 KOG2446 consensus 87.2 1.1 2.9E-05 25.3 4.4 86 66-155 152-243 (546)
261 COG1125 OpuBA ABC-type proline 87.0 1.1 2.7E-05 25.4 4.2 127 126-273 173-306 (309)
262 COG4175 ProV ABC-type proline/ 86.7 0.76 1.9E-05 26.5 3.3 46 230-276 337-382 (386)
263 KOG0475 consensus 86.4 0.68 1.7E-05 26.8 2.9 44 294-337 559-605 (696)
264 cd01409 SIRT4 SIRT4: Eukaryoti 82.6 1.6 4E-05 24.2 3.4 20 57-76 2-21 (260)
265 cd01413 SIR2_Af2 SIR2_Af2: Arc 82.1 2.2 5.7E-05 23.1 4.0 14 62-75 3-16 (222)
266 cd01410 SIRT7 SIRT7: Eukaryoti 82.1 2 5E-05 23.5 3.7 49 111-160 155-203 (206)
267 cd01412 SIRT5_Af1_CobB SIRT5_A 81.5 1.6 4.2E-05 24.1 3.2 54 109-163 162-215 (224)
268 PRK09939 putative oxidoreducta 81.1 4.6 0.00012 20.8 12.2 261 51-320 129-462 (759)
269 PRK02006 murD UDP-N-acetylmura 80.6 4.4 0.00011 20.9 5.1 75 63-143 7-102 (501)
270 PRK07860 NADH dehydrogenase su 79.8 5.1 0.00013 20.5 7.7 116 52-167 311-447 (809)
271 TIGR01082 murC UDP-N-acetylmur 78.8 5.5 0.00014 20.3 6.6 101 66-185 1-128 (491)
272 PRK13529 malate dehydrogenase; 78.5 5.6 0.00014 20.2 8.5 83 66-150 297-421 (563)
273 cd05563 PTS_IIB_ascorbate PTS_ 77.3 5.8 0.00015 20.1 4.9 65 70-149 8-74 (86)
274 PRK03803 murD UDP-N-acetylmura 77.2 4.6 0.00012 20.8 4.4 76 62-143 5-98 (448)
275 TIGR01027 proB glutamate 5-kin 77.0 5.1 0.00013 20.5 4.5 149 122-301 24-186 (379)
276 PRK00141 murD UDP-N-acetylmura 76.9 6.2 0.00016 19.9 5.7 29 63-94 16-44 (476)
277 COG0773 MurC UDP-N-acetylmuram 76.8 6.2 0.00016 19.9 6.6 99 65-184 8-126 (459)
278 TIGR00176 mobB molybdopterin-g 76.7 3 7.5E-05 22.2 3.3 54 109-162 65-120 (165)
279 COG1111 MPH1 ERCC4-like helica 76.0 6.4 0.00016 19.8 4.8 113 47-160 38-184 (542)
280 PRK05333 NAD-dependent deacety 75.1 2.4 6.1E-05 22.9 2.5 27 50-76 6-32 (285)
281 COG2216 KdpB High-affinity K+ 75.0 4.7 0.00012 20.7 3.9 38 302-340 415-452 (681)
282 PRK01438 murD UDP-N-acetylmura 74.7 6.7 0.00017 19.6 4.7 26 63-92 14-39 (481)
283 TIGR01701 Fdhalpha-like oxidor 74.7 7 0.00018 19.5 7.8 195 51-252 136-399 (824)
284 TIGR00118 acolac_lg acetolacta 73.6 6.8 0.00017 19.6 4.5 257 50-335 200-509 (593)
285 cd01411 SIR2H SIR2H: Uncharact 73.6 5.1 0.00013 20.5 3.8 20 57-76 2-21 (225)
286 PRK00481 NAD-dependent deacety 73.3 3 7.7E-05 22.1 2.6 23 54-76 2-24 (239)
287 COG2130 Putative NADP-dependen 71.6 5.4 0.00014 20.3 3.6 76 81-163 123-204 (340)
288 PRK00349 uvrA excinuclease ABC 71.3 5.5 0.00014 20.2 3.6 89 114-211 639-739 (944)
289 PRK08313 acetyl-CoA acetyltran 71.1 8.3 0.00021 18.9 4.4 65 189-259 147-221 (391)
290 TIGR01497 kdpB K+-transporting 70.6 5.4 0.00014 20.3 3.4 39 301-340 413-451 (675)
291 TIGR01816 sdhA_forward succina 70.5 2.6 6.6E-05 22.6 1.7 67 142-215 182-250 (615)
292 PRK11199 tyrA bifunctional cho 70.3 8.7 0.00022 18.8 5.5 88 64-155 98-185 (374)
293 PRK10535 macrolide transporter 70.1 8.8 0.00022 18.8 5.0 41 121-163 177-217 (648)
294 PRK01390 murD UDP-N-acetylmura 69.8 8.9 0.00023 18.7 5.8 75 63-143 9-98 (457)
295 TIGR00514 accC acetyl-CoA carb 69.5 3.8 9.7E-05 21.4 2.4 83 116-216 5-88 (451)
296 PRK10751 molybdopterin-guanine 69.2 4.6 0.00012 20.8 2.8 32 115-146 7-38 (170)
297 cd06276 PBP1_FucR_like Ligand- 68.8 9.3 0.00024 18.6 6.5 33 281-313 198-232 (247)
298 cd03116 MobB Molybdenum is an 68.6 4.8 0.00012 20.6 2.8 32 115-146 6-37 (159)
299 TIGR01026 fliI_yscN ATPase Fli 68.1 6.8 0.00017 19.6 3.5 79 56-164 163-255 (455)
300 COG4015 Predicted dinucleotide 67.7 9.8 0.00025 18.4 6.0 35 111-145 106-141 (217)
301 COG1435 Tdk Thymidine kinase [ 67.6 6.3 0.00016 19.8 3.2 63 117-182 11-73 (201)
302 TIGR01296 asd_B aspartate-semi 64.4 11 0.00029 18.0 5.9 235 72-323 5-289 (350)
303 TIGR01966 RNasePH ribonuclease 63.3 12 0.0003 17.8 4.5 65 119-198 81-147 (237)
304 smart00859 Semialdhyde_dh Semi 62.8 12 0.00031 17.8 4.7 35 112-146 66-100 (122)
305 PRK03806 murD UDP-N-acetylmura 62.7 12 0.00031 17.8 6.0 28 63-94 6-33 (438)
306 cd02752 MopB_Formate-Dh-Na-lik 62.2 12 0.00031 17.7 6.4 96 66-165 107-225 (649)
307 COG1763 MobB Molybdopterin-gua 62.1 9.2 0.00023 18.6 3.2 32 115-146 7-38 (161)
308 KOG2684 consensus 61.8 12 0.00031 17.7 3.8 27 50-76 75-101 (412)
309 KOG0238 consensus 60.8 12 0.0003 17.8 3.6 16 119-134 388-403 (670)
310 PRK01710 murD UDP-N-acetylmura 60.0 13 0.00034 17.4 6.0 29 60-92 11-39 (458)
311 TIGR01754 flav_RNR ribonucleot 59.7 6.2 0.00016 19.9 2.0 38 118-156 8-46 (145)
312 cd02038 FleN-like FleN is a me 59.3 14 0.00035 17.4 5.9 56 71-133 10-66 (139)
313 cd02759 MopB_Acetylene-hydrata 59.0 14 0.00035 17.3 9.7 126 109-254 158-288 (477)
314 PRK06719 precorrin-2 dehydroge 58.9 11 0.00028 18.0 3.2 92 63-166 13-116 (157)
315 COG0529 CysC Adenylylsulfate k 58.7 14 0.00036 17.3 4.3 86 60-156 18-110 (197)
316 PRK02472 murD UDP-N-acetylmura 58.2 14 0.00036 17.2 4.0 26 63-92 9-34 (450)
317 pfam01936 DUF88 Protein of unk 57.2 15 0.00038 17.1 4.5 106 52-161 18-138 (140)
318 PRK00393 ribA GTP cyclohydrola 56.8 15 0.00038 17.1 5.0 91 233-329 65-158 (198)
319 PRK05562 precorrin-2 dehydroge 56.6 14 0.00036 17.2 3.4 100 64-174 24-137 (222)
320 pfam00205 TPP_enzyme_M Thiamin 56.6 15 0.00038 17.0 5.8 42 54-95 2-44 (138)
321 PRK06249 2-dehydropantoate 2-r 56.0 15 0.00039 17.0 6.9 89 64-155 5-118 (313)
322 cd06167 LabA_like LabA_like pr 55.9 15 0.00039 17.0 4.2 47 111-160 99-147 (149)
323 PRK08116 hypothetical protein; 55.7 16 0.0004 16.9 3.7 33 67-100 111-146 (262)
324 KOG2004 consensus 55.3 16 0.0004 16.9 5.0 68 15-88 393-464 (906)
325 COG1064 AdhP Zn-dependent alco 55.2 16 0.0004 16.9 6.0 50 66-146 169-218 (339)
326 PRK10696 C32 tRNA thiolase; Pr 54.8 16 0.0004 17.0 3.3 52 105-156 32-93 (311)
327 pfam00265 TK Thymidine kinase. 54.6 12 0.0003 17.8 2.7 48 113-163 4-51 (175)
328 PRK09628 oorB 2-oxoglutarate-a 54.4 16 0.00041 16.8 4.1 97 65-173 44-157 (281)
329 PRK05506 bifunctional sulfate 54.4 16 0.00042 16.8 3.7 75 249-324 392-481 (613)
330 COG3290 CitA Signal transducti 54.4 0.31 8E-06 29.3 -5.4 15 315-330 297-311 (537)
331 PRK07535 methyltetrahydrofolat 54.1 15 0.00039 17.0 3.3 81 66-149 40-127 (268)
332 PRK04870 histidinol-phosphate 54.1 16 0.00042 16.8 8.9 111 44-156 59-170 (356)
333 PRK06718 precorrin-2 dehydroge 54.0 16 0.0004 17.0 3.2 106 63-181 10-136 (202)
334 PRK09754 phenylpropionate diox 53.9 17 0.00042 16.7 7.5 93 54-160 135-253 (400)
335 pfam11017 DUF2855 Protein of u 53.8 17 0.00042 16.7 4.0 51 113-165 137-192 (314)
336 TIGR01064 pyruv_kin pyruvate k 53.8 16 0.0004 16.9 3.2 33 112-148 407-439 (513)
337 cd03238 ABC_UvrA The excision 53.1 13 0.00034 17.4 2.8 19 109-127 18-38 (176)
338 PRK08611 pyruvate oxidase; Pro 52.3 18 0.00045 16.6 6.2 92 49-148 189-297 (576)
339 pfam01935 DUF87 Domain of unkn 52.0 15 0.00039 17.0 2.9 39 66-108 28-66 (218)
340 KOG4576 consensus 51.9 4.9 0.00013 20.6 0.4 55 199-258 106-160 (167)
341 PRK11869 2-oxoacid ferredoxin 51.8 18 0.00045 16.5 4.1 98 64-173 39-153 (284)
342 TIGR01063 gyrA DNA gyrase, A s 50.7 5.8 0.00015 20.0 0.6 34 107-140 518-551 (864)
343 pfam01041 DegT_DnrJ_EryC1 DegT 50.3 19 0.00048 16.4 6.9 113 47-160 24-168 (363)
344 pfam10432 bact-PGI_C Bacterial 49.9 19 0.00048 16.3 11.9 115 65-203 17-142 (154)
345 PRK03659 glutathione-regulated 49.5 19 0.00049 16.3 6.1 94 62-158 398-510 (602)
346 LOAD_sir2 consensus 49.4 19 0.00049 16.3 3.2 11 66-76 4-14 (217)
347 PRK06522 2-dehydropantoate 2-r 49.0 20 0.0005 16.2 6.8 41 109-149 66-106 (307)
348 TIGR00878 purM phosphoribosylf 48.6 9.6 0.00024 18.5 1.5 25 109-133 174-198 (338)
349 PRK10669 putative cation:proto 48.6 20 0.00051 16.2 6.0 26 231-256 421-446 (558)
350 TIGR02386 rpoC_TIGR DNA-direct 48.5 11 0.00029 18.0 1.8 201 50-311 204-427 (1552)
351 cd02755 MopB_Thiosulfate-R-lik 48.5 20 0.00051 16.2 10.1 124 109-252 154-282 (454)
352 cd02540 GT2_GlmU_N_bac N-termi 48.3 20 0.00051 16.1 4.7 85 249-335 133-229 (229)
353 PRK07855 lipid-transfer protei 47.7 20 0.00052 16.1 7.9 38 189-226 153-200 (386)
354 TIGR00175 mito_nad_idh isocitr 47.5 13 0.00032 17.6 1.9 44 209-253 10-68 (348)
355 cd03271 ABC_UvrA_II The excisi 47.4 21 0.00053 16.1 3.6 70 195-274 107-177 (261)
356 PRK11658 UDP-4-amino-4-deoxy-L 47.3 21 0.00053 16.0 8.6 90 48-143 33-153 (379)
357 PRK07261 topology modulation p 47.0 20 0.00051 16.2 2.9 88 66-172 2-95 (171)
358 cd01525 RHOD_Kc Member of the 46.9 21 0.00053 16.1 3.0 10 113-122 66-75 (105)
359 PRK11867 2-oxoglutarate ferred 46.6 21 0.00054 16.0 4.7 97 65-173 44-157 (280)
360 TIGR01313 therm_gnt_kin carboh 46.5 14 0.00037 17.2 2.1 18 69-87 6-23 (175)
361 PRK11706 TDP-4-oxo-6-deoxy-D-g 46.2 22 0.00055 15.9 8.5 95 48-143 31-151 (375)
362 PRK04965 nitric oxide reductas 46.0 22 0.00055 15.9 4.6 44 52-99 130-173 (378)
363 pfam03948 Ribosomal_L9_C Ribos 45.8 22 0.00056 15.9 3.1 49 240-288 5-53 (86)
364 PRK11070 ssDNA exonuclease Rec 45.6 22 0.00056 15.9 12.2 188 42-248 43-254 (574)
365 PRK13482 DNA integrity scannin 45.3 7.2 0.00018 19.4 0.4 93 50-156 15-130 (352)
366 COG3053 CitC Citrate lyase syn 44.5 7.3 0.00019 19.3 0.4 83 87-169 86-185 (352)
367 COG0846 SIR2 NAD-dependent pro 44.2 13 0.00033 17.5 1.6 24 53-76 2-25 (250)
368 pfam05198 IF3_N Translation in 43.8 23 0.00059 15.7 3.0 31 127-157 30-60 (76)
369 TIGR02247 HAD-1A3-hyp Epoxide 43.4 22 0.00055 15.9 2.6 72 122-203 105-188 (228)
370 PRK05778 2-oxoglutarate ferred 43.4 24 0.0006 15.6 3.0 95 66-173 47-159 (306)
371 PRK13886 conjugal transfer pro 43.3 20 0.00052 16.1 2.5 34 71-106 13-46 (241)
372 PRK05671 aspartate-semialdehyd 43.2 24 0.00061 15.6 6.4 116 66-189 4-143 (336)
373 PRK07116 flavodoxin; Provision 43.1 24 0.00061 15.6 3.5 32 113-146 3-34 (158)
374 cd06557 KPHMT-like Ketopantoat 42.6 24 0.00062 15.5 3.6 118 131-251 4-128 (254)
375 smart00829 PKS_ER Enoylreducta 42.6 21 0.00053 16.0 2.4 43 105-149 98-140 (288)
376 COG1509 KamA Lysine 2,3-aminom 42.5 24 0.00062 15.5 4.7 67 236-311 235-311 (369)
377 TIGR03129 one_C_dehyd_B formyl 42.4 24 0.00062 15.5 10.6 115 51-167 64-202 (421)
378 cd03033 ArsC_15kD Arsenate Red 42.3 24 0.00062 15.5 4.8 85 237-329 11-103 (113)
379 COG2179 Predicted hydrolase of 42.2 25 0.00063 15.5 3.9 60 107-166 30-93 (175)
380 pfam00289 CPSase_L_chain Carba 42.2 25 0.00063 15.5 3.0 100 116-237 4-106 (109)
381 KOG0585 consensus 41.8 25 0.00063 15.5 2.9 50 24-76 209-258 (576)
382 cd03270 ABC_UvrA_I The excisio 41.4 25 0.00064 15.4 3.0 16 109-124 18-35 (226)
383 PRK08939 primosomal protein Dn 41.2 18 0.00047 16.4 2.0 18 302-319 279-296 (306)
384 PRK00311 panB 3-methyl-2-oxobu 41.1 25 0.00065 15.4 4.1 120 129-251 7-133 (266)
385 TIGR01812 sdhA_frdA_Gneg succi 40.8 3.6 9.2E-05 21.6 -1.7 23 287-309 500-522 (636)
386 TIGR03608 L_ocin_972_ABC putat 40.7 26 0.00066 15.3 2.7 37 109-146 21-59 (206)
387 pfam02887 PK_C Pyruvate kinase 40.7 26 0.00066 15.3 3.0 40 112-156 17-56 (117)
388 COG3845 ABC-type uncharacteriz 39.9 12 0.0003 17.8 0.8 179 121-315 173-393 (501)
389 PRK08153 histidinol-phosphate 39.5 27 0.00069 15.2 8.8 115 37-155 58-172 (370)
390 TIGR02418 acolac_catab acetola 39.5 27 0.00069 15.2 5.9 193 44-267 182-423 (553)
391 pfam01113 DapB_N Dihydrodipico 39.2 27 0.00069 15.2 3.0 47 109-158 63-110 (122)
392 COG2379 GckA Putative glycerat 38.9 27 0.0007 15.2 5.8 188 62-258 35-279 (422)
393 PTZ00293 thymidine kinase; Pro 38.9 27 0.0007 15.1 3.8 47 114-163 8-54 (284)
394 PRK02705 murD UDP-N-acetylmura 38.8 28 0.0007 15.1 4.5 15 191-205 290-304 (459)
395 PRK05561 DNA topoisomerase IV 38.8 15 0.00038 17.1 1.2 20 108-127 504-523 (745)
396 cd02762 MopB_1 The MopB_1 CD i 38.6 28 0.00071 15.1 4.6 124 109-253 154-288 (539)
397 PRK05826 pyruvate kinase; Prov 38.0 28 0.00072 15.1 2.9 24 115-138 189-212 (461)
398 cd02766 MopB_3 The MopB_3 CD i 38.0 28 0.00072 15.1 8.1 122 110-252 156-282 (501)
399 pfam12396 DUF3659 Protein of u 37.9 21 0.00053 16.0 1.8 25 255-279 14-38 (64)
400 TIGR01048 lysA diaminopimelate 37.8 20 0.00052 16.1 1.8 197 50-259 84-343 (431)
401 COG0111 SerA Phosphoglycerate 37.5 29 0.00073 15.0 4.6 36 108-144 42-77 (324)
402 PRK09318 bifunctional 3,4-dihy 37.5 29 0.00074 15.0 4.3 112 211-329 227-344 (387)
403 PRK00683 murD UDP-N-acetylmura 37.3 29 0.00074 15.0 4.4 26 63-92 3-28 (418)
404 cd05312 NAD_bind_1_malic_enz N 37.2 29 0.00074 15.0 6.7 83 66-150 27-144 (279)
405 KOG4232 consensus 36.9 15 0.00039 17.0 1.0 22 196-217 281-302 (430)
406 COG0439 AccC Biotin carboxylas 36.9 29 0.00075 14.9 7.5 13 123-135 173-185 (449)
407 PRK03562 glutathione-regulated 36.9 29 0.00075 14.9 6.2 97 60-159 395-510 (615)
408 PRK09196 fructose-1,6-bisphosp 36.7 24 0.00061 15.6 2.0 168 122-311 120-314 (347)
409 cd02169 Citrate_lyase_ligase C 36.6 9.4 0.00024 18.5 -0.1 90 82-171 50-155 (296)
410 cd02754 MopB_Nitrate-R-NapA-li 36.5 30 0.00076 14.9 6.1 54 109-163 155-212 (565)
411 TIGR02707 butyr_kinase butyrat 36.5 22 0.00057 15.8 1.8 121 178-308 212-339 (353)
412 cd00641 GTP_cyclohydro2 GTP cy 36.5 30 0.00076 14.9 3.5 32 236-267 67-98 (193)
413 pfam00743 FMO-like Flavin-bind 36.4 26 0.00065 15.4 2.1 18 63-81 1-18 (532)
414 PRK10864 putative methyltransf 36.3 30 0.00076 14.9 3.4 35 111-145 198-232 (348)
415 TIGR00213 GmhB_yaeD D,D-heptos 36.3 27 0.00069 15.2 2.2 69 125-215 29-99 (178)
416 PRK13506 formate--tetrahydrofo 36.1 30 0.00077 14.8 6.4 88 202-292 453-554 (577)
417 PRK09814 hypothetical protein; 35.8 30 0.00078 14.8 6.6 44 106-149 59-103 (337)
418 cd02763 MopB_2 The MopB_2 CD i 35.8 30 0.00078 14.8 9.9 127 66-212 97-241 (679)
419 PRK08942 D,D-heptose 1,7-bisph 35.8 23 0.0006 15.7 1.8 24 125-148 32-55 (181)
420 cd02760 MopB_Phenylacetyl-CoA- 35.5 31 0.00079 14.8 10.9 66 127-208 192-259 (760)
421 TIGR01116 ATPase-IIA1_Ca calci 35.3 31 0.00079 14.8 2.9 41 281-332 656-697 (800)
422 PRK04296 thymidine kinase; Pro 35.2 31 0.00079 14.8 3.1 38 114-151 6-43 (197)
423 KOG0953 consensus 35.1 31 0.0008 14.7 3.4 33 104-140 350-382 (700)
424 PRK06546 pyruvate dehydrogenas 34.9 32 0.0008 14.7 6.6 95 49-155 187-300 (578)
425 TIGR01163 rpe ribulose-phospha 34.2 32 0.00082 14.6 3.7 44 123-167 91-140 (216)
426 KOG1399 consensus 34.0 32 0.00083 14.6 2.7 21 64-85 187-208 (448)
427 PRK06965 acetolactate synthase 34.0 33 0.00083 14.6 6.2 68 50-119 208-295 (587)
428 TIGR01911 HesB_rel_seleno HesB 33.8 28 0.00071 15.1 1.9 37 66-118 29-65 (93)
429 KOG2305 consensus 33.8 14 0.00035 17.4 0.3 65 70-134 6-88 (313)
430 PRK06466 acetolactate synthase 33.4 33 0.00085 14.5 5.9 94 51-148 194-307 (574)
431 PRK06444 prephenate dehydrogen 33.3 33 0.00085 14.5 5.3 68 72-160 6-73 (197)
432 PRK10754 quinone oxidoreductas 33.2 33 0.00085 14.5 2.8 56 105-162 134-192 (327)
433 PRK13826 Dtr system oriT relax 33.2 33 0.00085 14.5 5.8 92 52-145 385-503 (1102)
434 PRK06769 hypothetical protein; 33.1 31 0.00079 14.8 2.1 24 125-148 31-54 (175)
435 KOG0581 consensus 33.1 17 0.00043 16.7 0.7 21 275-295 318-339 (364)
436 COG0188 GyrA Type IIA topoisom 33.0 30 0.00077 14.9 2.0 18 108-125 499-516 (804)
437 PRK05480 uridine kinase; Provi 32.9 34 0.00086 14.5 2.8 38 109-146 2-42 (209)
438 PRK05858 hypothetical protein; 32.8 34 0.00086 14.5 5.8 72 49-120 191-273 (543)
439 PTZ00081 enolase (2-phospho-D- 32.8 34 0.00086 14.5 3.1 77 228-320 292-378 (442)
440 TIGR02087 LEUD_arch 3-isopropy 32.4 16 0.00041 16.8 0.5 49 49-102 38-110 (159)
441 PRK08118 topology modulation p 32.3 35 0.00088 14.4 3.0 87 66-171 3-94 (167)
442 KOG1368 consensus 32.3 21 0.00054 16.0 1.1 64 185-248 215-292 (384)
443 PRK08727 hypothetical protein; 32.0 35 0.00089 14.4 6.6 139 66-216 43-201 (233)
444 TIGR02429 pcaI_scoA_fam 3-oxoa 32.0 35 0.00089 14.4 2.9 79 52-155 8-86 (222)
445 PRK00077 eno phosphopyruvate h 32.0 35 0.00089 14.4 3.3 83 228-326 277-370 (427)
446 TIGR01389 recQ ATP-dependent D 31.9 20 0.00052 16.1 1.0 27 73-99 226-259 (607)
447 TIGR01694 MTAP methylthioadeno 31.9 15 0.00037 17.2 0.2 76 79-159 141-217 (263)
448 PRK13979 DNA topoisomerase IV 31.4 24 0.00062 15.6 1.3 21 108-128 513-533 (959)
449 PRK08040 putative semialdehyde 31.3 36 0.00091 14.3 6.6 135 67-210 5-161 (337)
450 PRK03317 histidinol-phosphate 31.2 36 0.00092 14.3 8.3 109 45-155 62-176 (369)
451 cd02765 MopB_4 The MopB_4 CD i 31.1 36 0.00092 14.3 9.4 84 111-211 159-244 (567)
452 KOG4238 consensus 30.7 37 0.00093 14.2 3.0 81 66-154 52-135 (627)
453 PRK00048 dihydrodipicolinate r 30.7 37 0.00093 14.2 3.8 67 109-185 67-134 (265)
454 pfam00070 Pyr_redox Pyridine n 30.6 37 0.00094 14.2 3.0 57 66-142 1-58 (82)
455 PRK05678 succinyl-CoA syntheta 30.4 37 0.00094 14.2 4.6 31 113-143 91-121 (289)
456 PRK06940 short chain dehydroge 30.2 37 0.00095 14.2 7.8 22 64-87 4-25 (277)
457 PRK06882 acetolactate synthase 30.2 37 0.00095 14.2 6.8 70 51-120 194-281 (574)
458 COG1231 Monoamine oxidase [Ami 30.1 37 0.00095 14.2 3.9 65 66-142 9-82 (450)
459 PRK09271 flavodoxin; Provision 30.1 37 0.00095 14.2 4.7 27 115-141 5-32 (160)
460 PRK13018 cell division protein 30.1 37 0.00095 14.2 3.7 75 109-189 109-204 (387)
461 PRK00137 rplI 50S ribosomal pr 30.0 37 0.00096 14.2 3.0 40 239-278 65-104 (147)
462 PRK10537 voltage-gated potassi 29.9 38 0.00096 14.2 8.0 36 224-259 201-236 (356)
463 PRK05446 imidazole glycerol-ph 29.7 36 0.00092 14.3 2.0 46 51-96 33-91 (354)
464 PRK12921 2-dehydropantoate 2-r 29.7 38 0.00097 14.1 6.7 40 110-149 67-106 (306)
465 pfam06309 Torsin Torsin. This 29.7 37 0.00093 14.2 2.0 28 69-97 61-88 (127)
466 pfam01118 Semialdhyde_dh Semia 29.7 38 0.00097 14.1 4.3 34 110-146 65-98 (121)
467 TIGR03420 DnaA_homol_Hda DnaA 29.7 38 0.00097 14.1 7.0 82 66-149 40-133 (226)
468 PRK08462 biotin carboxylase; V 29.5 38 0.00097 14.1 3.4 33 297-337 392-424 (446)
469 PRK05560 DNA gyrase subunit A; 29.4 24 0.00062 15.5 1.0 31 108-138 499-529 (822)
470 cd01481 vWA_collagen_alpha3-VI 29.2 39 0.00098 14.1 3.7 33 113-145 108-140 (165)
471 TIGR01369 CPSaseII_lrg carbamo 28.9 39 0.001 14.0 4.3 29 113-143 649-678 (1089)
472 TIGR02177 PorB_KorB 2-oxoacid: 28.8 32 0.00083 14.6 1.6 140 62-226 27-196 (302)
473 COG0241 HisB Histidinol phosph 28.5 40 0.001 14.0 2.1 35 238-272 35-69 (181)
474 pfam00113 Enolase_C Enolase, C 28.4 40 0.001 14.0 3.5 19 58-76 52-70 (296)
475 PRK13889 conjugal transfer rel 28.2 40 0.001 14.0 5.7 92 52-145 350-468 (992)
476 PRK13413 mpi multiple promoter 28.1 40 0.001 13.9 3.7 40 108-147 58-100 (200)
477 COG0028 IlvB Thiamine pyrophos 28.0 40 0.001 13.9 6.1 67 51-119 188-274 (550)
478 PRK06300 enoyl-(acyl carrier p 28.0 40 0.001 13.9 3.1 30 64-93 7-37 (298)
479 PRK05105 O-succinylbenzoate sy 28.0 34 0.00086 14.5 1.6 12 121-132 115-126 (326)
480 PRK09206 pyruvate kinase; Prov 27.6 41 0.001 13.9 2.7 23 115-137 188-210 (470)
481 TIGR01975 isoAsp_dipep beta-as 27.6 37 0.00095 14.2 1.7 47 232-278 261-321 (391)
482 TIGR00630 uvra excinuclease AB 27.4 41 0.0011 13.9 3.8 148 113-275 668-869 (956)
483 pfam03205 MobB Molybdopterin g 27.4 41 0.0011 13.9 2.6 27 66-93 2-31 (122)
484 COG1623 Predicted nucleic-acid 27.3 22 0.00056 15.9 0.5 20 130-149 111-130 (349)
485 TIGR02784 addA_alphas double-s 27.2 42 0.0011 13.8 4.5 230 50-296 184-444 (1190)
486 TIGR02244 HAD-IG-Ncltidse HAD 27.2 42 0.0011 13.8 4.4 55 205-261 191-246 (402)
487 KOG2390 consensus 27.1 42 0.0011 13.8 3.5 84 117-210 315-418 (669)
488 pfam00521 DNA_topoisoIV DNA gy 26.8 35 0.00089 14.4 1.5 19 114-132 112-131 (428)
489 COG0219 CspR Predicted rRNA me 26.8 42 0.0011 13.8 3.1 71 112-189 74-146 (155)
490 PRK13640 cbiO cobalt transport 26.7 42 0.0011 13.8 3.5 59 199-258 132-203 (283)
491 TIGR02389 RNA_pol_rpoA2 DNA-di 26.6 26 0.00067 15.3 0.8 22 249-271 235-261 (397)
492 KOG0537 consensus 26.2 43 0.0011 13.7 2.0 48 199-254 30-79 (124)
493 PRK07453 protochlorophyllide o 26.2 43 0.0011 13.7 3.3 35 176-213 194-228 (322)
494 PRK10637 cysG siroheme synthas 26.2 43 0.0011 13.7 6.7 25 108-132 116-140 (457)
495 pfam05368 NmrA NmrA-like famil 26.1 43 0.0011 13.7 5.3 75 72-146 4-102 (232)
496 pfam02457 DisA_N DisA bacteria 26.1 24 0.0006 15.6 0.5 30 239-268 1-30 (122)
497 TIGR01176 fum_red_Fp fumarate 26.1 18 0.00045 16.5 -0.1 35 179-215 202-238 (585)
498 PRK12360 4-hydroxy-3-methylbut 26.0 44 0.0011 13.7 4.3 39 113-151 211-267 (281)
499 TIGR00853 pts-lac PTS system, 25.9 44 0.0011 13.7 3.9 53 111-163 46-101 (142)
500 cd02786 MopB_CT_3 The MopB_CT_ 25.9 34 0.00088 14.4 1.3 31 90-123 29-59 (116)
No 1
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=753.11 Aligned_cols=319 Identities=39% Similarity=0.596 Sum_probs=310.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 24579999999999999999999997200113669999999982799599993381379999999998750886110123
Q gi|255764505|r 19 MKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHA 98 (341)
Q Consensus 19 ~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~ 98 (341)
|+++.++.|+++++.|++||.++.++++. +|.+||++|.+|+|||+|+|+||||+||+|+||||+|||+||||+||
T Consensus 1 m~~~ii~~ak~vl~~E~~al~~l~~~l~~----~f~~av~~i~~~~G~vi~~GvGKSg~ia~KiaaTl~StGtps~f~hp 76 (321)
T PRK11543 1 MSEALLNAGRQTLMLELQEASRLPERLGD----DFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHP 76 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 97799999999999999999999986668----99999999981899889992765799999999998654886543670
Q ss_pred CCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHH
Q ss_conf 30232023012104707898368780788766666320456279984478895452145337688615543247521789
Q gi|255764505|r 99 AEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTS 178 (341)
Q Consensus 99 ~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~S 178 (341)
+||+|||||+++++|++|+||+||||+|++++++++|++|+++|+||+|++|+|++.||++|.+|+.+||||+|+|||+|
T Consensus 77 ~ea~HGDlG~i~~~D~~i~~S~SG~t~El~~~~~~~k~~~~~ii~it~~~~S~Lak~sd~~l~~~~~~Eacp~~LaPTtS 156 (321)
T PRK11543 77 AEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSS 156 (321)
T ss_pred HHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHH
T ss_conf 11155665678789989999589881778877278876698689997899997688269489726656666567775089
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 999999999999999985033878887531100111124-3333321047543055100238888987410466200000
Q gi|255764505|r 179 AIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVV 257 (341)
Q Consensus 179 tt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vv 257 (341)
||++|++|||||++||++|||+++||+++||||+||++| ++|+|+|++++++|+|+++++++||+..|+++++|+++|+
T Consensus 157 tt~~lalGDALAv~lm~~r~F~~~dFa~~HPgG~LGk~Ll~~V~dlM~~~~~lP~v~~~~~l~dai~~ms~k~lG~v~Vv 236 (321)
T PRK11543 157 TVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRGDAIPQVALTASVMDAMLELSRTGLGLVAVC 236 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf 99999998899999999959998789760989888899999999997335578989999879999999664886179983
Q ss_pred CCCCEEEEEEECCCHHHHHHCC-CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHH
Q ss_conf 0432323241234035676178-233709883488978977998789999999967995899980698489998588897
Q gi|255764505|r 258 DEGQKLKGIITEGDIFRNFHKD-LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLL 336 (341)
Q Consensus 258 d~~~~liGIITdgDlrR~l~~~-~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLl 336 (341)
|++++++||||||||||++.++ ..+.+++++|+++|+++++|..+.+|+++|++++|+.|||||++++++|+||+|||+
T Consensus 237 d~~~kL~GIITDGDLRR~l~k~~~L~~~v~~vMT~nP~tI~~d~la~eAl~iM~~~kI~~LpVvd~~~k~vGiIhiHDLl 316 (321)
T PRK11543 237 DAQQQVKGVFTDGDLRRWLVGGGALTTPVNEAMTVGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFY 316 (321)
T ss_pred CCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHH
T ss_conf 37750688874438999986378567689998489995789987199999999987986899985899599996389786
Q ss_pred HCCCC
Q ss_conf 43689
Q gi|255764505|r 337 RFGII 341 (341)
Q Consensus 337 kagii 341 (341)
++|+|
T Consensus 317 ~~Gii 321 (321)
T PRK11543 317 QAGII 321 (321)
T ss_pred HCCCC
T ss_conf 76899
No 2
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=738.83 Aligned_cols=317 Identities=42% Similarity=0.699 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45799999999999999999999972001136699999999827995999933813799999999987508861101233
Q gi|255764505|r 20 KNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA 99 (341)
Q Consensus 20 ~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ 99 (341)
+-++++.|+++++.|+++|.++.++++. +|.+||++|.+|+|||+|+|+||||+||+|+||||+|+|+||||+||+
T Consensus 7 ~~~~~~~ak~vl~~E~~al~~l~~~l~~----~f~~av~~i~~~kGkvi~~GvGKSg~ia~KiaaTl~StGtps~flhp~ 82 (326)
T PRK10892 7 GFDFQQAGKEVLAIEREGLAELDQYINQ----DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPG 82 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEECCHH
T ss_conf 7589999999999999999999987667----899999999828998899838657999999999986548751545743
Q ss_pred CHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 02320230121047078983687807887666663204562799844788954521453376886155432475217899
Q gi|255764505|r 100 EASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSA 179 (341)
Q Consensus 100 ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~St 179 (341)
||+|||||+++++|++|+||+||||+|++++++++|++++++|+||+|++|+|++.||++|.+|+.+||||+|+|||+||
T Consensus 83 ea~HGDlG~i~~~D~~i~~S~SG~t~El~~ll~~~~~~~~~iI~it~~~~S~l~~~sd~~l~~~~~~Eacp~~laPTtSt 162 (326)
T PRK10892 83 EAAHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAPTSST 162 (326)
T ss_pred HCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHH
T ss_conf 40646556777899899995898757787641787766985899956999966880887896578744665677751899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 9999999999999998503387888753110011112-433333210475430551002388889874104662000000
Q gi|255764505|r 180 IMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTL-FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD 258 (341)
Q Consensus 180 t~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~-Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd 258 (341)
|++|++|||||++||++|||+++||+++||||+|||+ +++|+|+|++++++|+|+++++++||+..|+++++|+++|+|
T Consensus 163 t~~lalgDala~~lm~~rgF~~~dFa~~HPgG~LGk~Ll~~V~dlM~~~~~lP~v~~~~~l~dai~~mt~k~lG~v~Vvd 242 (326)
T PRK10892 163 TATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVKKTASLRDALLEITRKNLGMTVICD 242 (326)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99999998999999998499986897609897777888878999851376588537760299999987458934999985
Q ss_pred CCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHH
Q ss_conf 43232324123403567617--8233709883488978977998789999999967995899980698489998588897
Q gi|255764505|r 259 EGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLL 336 (341)
Q Consensus 259 ~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLl 336 (341)
+++++.||||||||||++.+ ++.+.+++++||++|++|++++.+.+|+++|++++|+.|||+|+ ++++|+||+|||+
T Consensus 243 ~~gkL~GIiTDGDLRR~l~~~~~i~~~~~~diMT~nP~tI~~d~la~eAL~iMe~~kIt~L~Vvd~-~k~vGIihihDll 321 (326)
T PRK10892 243 DNMMIEGIFTDGDLRRVFDMGVDLRQLSIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG-DQLLGVLHMHDLL 321 (326)
T ss_pred CCCCEEEEEECHHHHHHHHHCCCCCCCCHHHHHCCCCCEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHH
T ss_conf 899689998626899998706883128799971899967899886999999998639818999889-9999997679786
Q ss_pred HCCCC
Q ss_conf 43689
Q gi|255764505|r 337 RFGII 341 (341)
Q Consensus 337 kagii 341 (341)
|+|+|
T Consensus 322 ~~Gii 326 (326)
T PRK10892 322 RAGVV 326 (326)
T ss_pred HCCCC
T ss_conf 76899
No 3
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=100.00 E-value=0 Score=678.99 Aligned_cols=267 Identities=46% Similarity=0.759 Sum_probs=260.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 95999933813799999999987508861101233023202301210470789836878078876666632045627998
Q gi|255764505|r 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 65 grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
|||++.|+|||||||||++|||+|||+||||+||+||+||||||++++||+++|||||||.|+..++|.+|+.+.++|++
T Consensus 1 GklVv~GiGKSGliGkK~vAt~aSTGtPSfFlHPtEA~HGDLGMv~~~Dvvl~ISYSGEs~e~~~Lip~Lk~~~~~lia~ 80 (272)
T TIGR00393 1 GKLVVVGIGKSGLIGKKIVATFASTGTPSFFLHPTEALHGDLGMVEPRDVVLLISYSGESKELDKLIPSLKRLSVKLIAV 80 (272)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 90899840706678999999741247755324643450364357586747999876887577877535777559708997
Q ss_pred ECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 4478895452145337688615543247521789999999999999999985033878887531100111124-333332
Q gi|255764505|r 145 TSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDV 223 (341)
Q Consensus 145 T~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~Di 223 (341)
|++|+|+|++.||++|++.|+|||||.|+||||||+++|++|||||++||++|||+.||||++||||+|||+| .||+|+
T Consensus 81 T~~p~S~La~~Ad~~L~i~v~kEaCP~~lAPTsSt~~TL~lGDaLa~al~~ArnF~~eDFA~~HPGG~LG~kLL~kV~dl 160 (272)
T TIGR00393 81 TGKPNSSLARAADYVLDIKVEKEACPLNLAPTSSTTVTLALGDALAVALMKARNFSEEDFAKFHPGGALGRKLLVKVKDL 160 (272)
T ss_pred CCCCCCCHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 28889724530654576677530278989735689999998899999998525888424411487046667888876776
Q ss_pred HCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH--HHC-CCCCCCHHHHCCCCCEEEC-CC
Q ss_conf 1047543055100238888987410466200000043232324123403567--617-8233709883488978977-99
Q gi|255764505|r 224 MHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN--FHK-DLNTLSVEDVMIKNPKVIL-ED 299 (341)
Q Consensus 224 M~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~--l~~-~~~~~~v~~iMt~~p~~I~-~d 299 (341)
|++.+++|.|.+.++++||+.+|+++++|.++|+|+++++.|||||||+||. +.+ +..+.+|+|+||..|++++ ++
T Consensus 161 m~t~d~lP~v~~tas~~DAL~e~~~~~LG~~~v~~~~~~~~Gv~tDGD~RR~l~~~g~~~l~~~v~~~mT~~p~~~~n~~ 240 (272)
T TIGR00393 161 MQTDDELPLVAPTASFKDALLEMSRKRLGLAVVCDENEQLKGVFTDGDLRRVLALLGGGALKKEVKDFMTLGPKTLKNSD 240 (272)
T ss_pred HCCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCHHHHHHHHHCCHHCCCCHHHHCCCCCEEEECHH
T ss_conf 40665678222367720210233137861799971555246787146599999881660002312221068881340145
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCEEEEEEE
Q ss_conf 87899999999679958999806984899985
Q gi|255764505|r 300 TLLTVAMQLLRQHNISVLMVVDDCQKAIGIVH 331 (341)
Q Consensus 300 ~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt 331 (341)
..+.||.++|+++||+.++|||++|+++|+|+
T Consensus 241 ~~l~~A~~~l~~~kI~~~~vvdd~nkl~G~~~ 272 (272)
T TIGR00393 241 ELLVEALEFLKKRKITSLVVVDDENKLLGVLH 272 (272)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCEEEEEEC
T ss_conf 68999999987279428999838971787539
No 4
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=409.35 Aligned_cols=200 Identities=49% Similarity=0.712 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99999999999999999999720011366999999998279959999338137999999999875088611012330232
Q gi|255764505|r 24 VQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASH 103 (341)
Q Consensus 24 ~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~H 103 (341)
.+.+++++..|.+++..+.+.++. ++|.+++++|.+|+|||+++|+||||+||+|+|+||+|+|+|+||+||+||+|
T Consensus 2 ~~~a~~i~~~~~~~l~~~~~~~~~---~~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~h 78 (202)
T COG0794 2 LDIAKEILMTEAEALLELAERLDD---EDFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALH 78 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCHHCC
T ss_conf 458999999999999999986077---99999999997248848998687268999999999973599559966730103
Q ss_pred HCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 02301210470789836878078876666632045627998447889545214533768861554324752178999999
Q gi|255764505|r 104 GDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQL 183 (341)
Q Consensus 104 gdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l 183 (341)
||+|+|+++|++|+||+||||+|++.+++++|+.|+++|+||+|++|+|++.||++|.+|+.+|+||+|++||+||++++
T Consensus 79 gdlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l 158 (202)
T COG0794 79 GDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTL 158 (202)
T ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77567898889999808971779999999999759948999589998678746869973674446867676520367887
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCC
Q ss_conf 9999999999985033878887531100111124-333332104
Q gi|255764505|r 184 AIGDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDVMHS 226 (341)
Q Consensus 184 ~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~ 226 (341)
+++|+++++|++.|+|+.+||+.+||||++|+++ .+++|.|+.
T Consensus 159 ~~gdal~~~L~e~~~f~~~D~~~~hp~g~lG~~l~~~v~~~~~~ 202 (202)
T COG0794 159 ALGDALAGTLFEARGFSFEDFAIAHPGGALGAKLLLKVKDHMNL 202 (202)
T ss_pred HHCCHHHHHHHHHHCCCHHHHHHHCCHHHHCCCHHHHHHHHCCC
T ss_conf 63308889999983787889999684165393678899986359
No 5
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=100.00 E-value=9e-35 Score=273.48 Aligned_cols=168 Identities=24% Similarity=0.381 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCC
Q ss_conf 99999999997200113669999999982799599993381379999999998750886110123302320230121047
Q gi|255764505|r 34 EKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDD 113 (341)
Q Consensus 34 e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~D 113 (341)
+.++|+++.+.+|. +.++++++.|.+++ ||+++|+|+||++|++++.+|.++|.+++|++...+ +.++++|
T Consensus 4 il~ei~~t~~~id~---~~i~~~v~~I~~a~-~I~v~G~G~Sg~ia~~~a~rL~~~G~~~~~~~d~~~-----~~i~~~D 74 (179)
T TIGR03127 4 ILDEISQVASRIDE---EELDKLADKIIKAK-RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTT-----PSIKKGD 74 (179)
T ss_pred HHHHHHHHHHHCCH---HHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCC-----CCCCCCC
T ss_conf 99999999996699---99999999997399-099999554399999999999851975799764444-----6699999
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEE----ECCCCCCCCCHHHHHHH--HHHHHH
Q ss_conf 078983687807887666663204562799844788954521453376886----15543247521789999--999999
Q gi|255764505|r 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPK----EPESCPHGLAPTTSAIM--QLAIGD 187 (341)
Q Consensus 114 v~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~----~~Ea~~~~~aPt~Stt~--~l~~~D 187 (341)
++|+||+||+|+|++++++.||++|+++|+||++++|||+++||++|.+|+ .+|.||.+++||+|+.. .|+++|
T Consensus 75 v~I~iS~SGeT~e~~~~~~~aK~~ga~ii~IT~~~~S~Lak~aD~~l~ip~~~~~~~~~~~~~~~p~~s~~e~~~l~~~D 154 (179)
T TIGR03127 75 LLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLD 154 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998199996899999999998799299997989897799499999906865457778856668667499999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999998503387888753110
Q gi|255764505|r 188 ALAIALLESRNFSENDFYVLHPG 210 (341)
Q Consensus 188 alav~l~~~~~~t~~df~~~HPg 210 (341)
+|+++||+++||+.+||+++|..
T Consensus 155 al~~~l~~~~~~~~~~~~~~H~n 177 (179)
T TIGR03127 155 AVILKLMKKKGLDEEEMKKRHAN 177 (179)
T ss_pred HHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 99999999819899999986556
No 6
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=100.00 E-value=7.2e-34 Score=266.91 Aligned_cols=170 Identities=23% Similarity=0.308 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEE
Q ss_conf 99999999999999720011366999999998279959999338137999999999875088611012330232023012
Q gi|255764505|r 30 SIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMI 109 (341)
Q Consensus 30 ~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i 109 (341)
.+...+++|+++.+.+|. +.+++++++|.+++ ||+|+|+|+||++|++++.+|.++|.+++|+.-..+. .+
T Consensus 3 ~~~~ii~ei~~t~~~ld~---~~i~~~~~~I~~a~-~I~~~G~G~Sg~va~~~a~rl~~lG~~~~~~~d~~~~-----~i 73 (179)
T cd05005 3 YLSLILEEIENVADKIDE---EELDKLISAILNAK-RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTP-----AI 73 (179)
T ss_pred HHHHHHHHHHHHHHHCCH---HHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCC-----CC
T ss_conf 799999999999997699---99999999997499-4899985625877999999997359801243565557-----79
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCC----CCH--HHHHHHHH
Q ss_conf 104707898368780788766666320456279984478895452145337688615543247----521--78999999
Q gi|255764505|r 110 TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG----LAP--TTSAIMQL 183 (341)
Q Consensus 110 ~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~----~aP--t~Stt~~l 183 (341)
+++|++|++|+||+|+|++++++.||++|+++|+||++++|+|+++||++|.+|+..|+|+.+ +.| |+|.+++|
T Consensus 74 ~~~Dv~I~iS~SG~T~~~~~~~~~aK~~ga~iI~IT~~~~S~la~~aD~~l~ip~~~~~~~~~~~~s~~pm~s~~e~~~l 153 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSAL 153 (179)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999999819999568999999999879919999798999789958999981874313888898765757759999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999985033878887531
Q gi|255764505|r 184 AIGDALAIALLESRNFSENDFYVLH 208 (341)
Q Consensus 184 ~~~Dalav~l~~~~~~t~~df~~~H 208 (341)
++||+++++||+++||+++||+++|
T Consensus 154 ~~~Dal~~~lm~~~~~~~~~~~~~H 178 (179)
T cd05005 154 VFLDAVIAKLMEELGVSEEEMKKRH 178 (179)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 9999999999998098999999746
No 7
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=100.00 E-value=1.7e-32 Score=256.87 Aligned_cols=128 Identities=57% Similarity=0.889 Sum_probs=126.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 95999933813799999999987508861101233023202301210470789836878078876666632045627998
Q gi|255764505|r 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 65 grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
|||+|+|+|+||++|++++.+|.++|.|++++|+.++.|+|+|+++++|++|+||+||+|+|++++++.+|++|+++|+|
T Consensus 1 GRI~~~GvG~S~~va~~~~~kl~r~G~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e~~~~~~~ak~~g~~vI~i 80 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAI 80 (128)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 94999942679999999999999579945754731555411347789999999979999867999999998637858999
Q ss_pred ECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 447889545214533768861554324752178999999999999999
Q gi|255764505|r 145 TSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIA 192 (341)
Q Consensus 145 T~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~ 192 (341)
|++++|||++.||++|.+|..+|.++++++||+|+++||++.|+|+++
T Consensus 81 T~~~~S~La~~ad~~l~~~~~eE~~~~~~~at~Sr~aqL~i~D~L~ia 128 (128)
T cd05014 81 TGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALAVA 128 (128)
T ss_pred ECCCCCHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 879999679968989977998657777874789999999999999859
No 8
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.94 E-value=2.4e-25 Score=204.82 Aligned_cols=172 Identities=18% Similarity=0.209 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 45799999999999999999999972001136699999999827995999933813799999999987508861101233
Q gi|255764505|r 20 KNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA 99 (341)
Q Consensus 20 ~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ 99 (341)
.+...+...++++...++|+.+.+.+|. +.|++++++|.+|+ ||+++|+|.|+.+|+.++..|.++|.++.+..-.
T Consensus 101 ~d~~~~i~~k~~~~~~~~l~~t~~~ld~---~~i~~av~li~~A~-~I~i~G~G~S~~vA~~~~~kl~rlG~~~~~~~d~ 176 (293)
T PRK11337 101 DDAPQDVVNKVFNISLQTIMEGQSIVNV---DEIHRAARFFYQAR-QRDLYGAGGSNAICADVQHKFLRIGVRCQAYPDA 176 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 8889999999999999999999972699---99999999998279-7089985726999999999999859804764777
Q ss_pred CHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 02320230121047078983687807887666663204562799844788954521453376886155432475217899
Q gi|255764505|r 100 EASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSA 179 (341)
Q Consensus 100 ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~St 179 (341)
....-....++++||+|+||+||+|+|++++++.||++|+++|+||++.+|||+++||++|.++..++ ++...+++|+
T Consensus 177 ~~~~~~a~~l~~~Dv~i~iS~sG~t~e~i~~~~~Ak~~Ga~vI~IT~~~~SpLa~~aD~vL~~~~~e~--~~~~~~~~sr 254 (293)
T PRK11337 177 HIMMMSASLLQEGDVVLVVSHSGRTSDVKAAVELAKQNGAKIICITHSYHSPIAKLADYIICSPAPET--PLLGRNASAR 254 (293)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCEEEECCCCCC--CCCCCCHHHH
T ss_conf 89999997189998899981899988999999999987994999769999846895899886488764--4344445999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999850
Q gi|255764505|r 180 IMQLAIGDALAIALLESR 197 (341)
Q Consensus 180 t~~l~~~Dalav~l~~~~ 197 (341)
.+||.+.|+|...+..++
T Consensus 255 ~~ql~viD~L~~~~~~~~ 272 (293)
T PRK11337 255 ILQLTLLDAFFVSVAQLN 272 (293)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999978
No 9
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.94 E-value=6.7e-25 Score=201.59 Aligned_cols=193 Identities=28% Similarity=0.318 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 67888655765533----------24579999999999999999999997200113669999999982799599993381
Q gi|255764505|r 5 FSHFKSVTRKGHSL----------MKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGK 74 (341)
Q Consensus 5 ~~~~~~~~~~~~~~----------~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~ 74 (341)
|++||..-+..... ..+..-+...+.+....++|+.+.+.++. ..++++|++|.+|+ ||+|+|.|.
T Consensus 65 f~efk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~---~~l~~av~~L~~A~-rI~~~G~g~ 140 (281)
T COG1737 65 FSEFKLALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERTLNLLDE---EALERAVELLAKAR-RIYFFGLGS 140 (281)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHCCC-CEEEEECCC
T ss_conf 89999999999763333100002456754689999999999999999853689---99999999997069-579996483
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 37999999999875088611012330232023012104707898368780788766666320456279984478895452
Q gi|255764505|r 75 SGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154 (341)
Q Consensus 75 S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~ 154 (341)
|+.+|++++..|..+|.++++++-.......+..++++|++|+||+||+|+|+++.++.+|++|+++|+||++.+|||++
T Consensus 141 S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~ 220 (281)
T COG1737 141 SGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAK 220 (281)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 59999999999998199669966841799999838999889998489996899999999997799299983999993666
Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 1453376886155432475217899999999999999999850338788
Q gi|255764505|r 155 HADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 155 ~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
.||++|.++..++..-.. |++|.+++|++.|+|+..+..+++-...+
T Consensus 221 ~Ad~~L~~~~~~~~~~~~--~~~s~~a~l~l~d~L~~~~~~~~~~~~~~ 267 (281)
T COG1737 221 LADIVLLVPVAEESFFRS--PISSRIAQLALIDALITAVAQRRGEAALK 267 (281)
T ss_pred HCCEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 547788712676322255--60788999999999999999874688999
No 10
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.94 E-value=1e-24 Score=200.23 Aligned_cols=187 Identities=20% Similarity=0.246 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6788865576553----------324579999999999999999999997200113669999999982799599993381
Q gi|255764505|r 5 FSHFKSVTRKGHS----------LMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGK 74 (341)
Q Consensus 5 ~~~~~~~~~~~~~----------~~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~ 74 (341)
|++||...+.... .-.++.-+...+++....++|+.+.+.+|. +.+++++++|.+|+ ||+|+|+|.
T Consensus 63 f~efK~~l~~~l~~~~~~~~~~~~~~d~~~~~~~ki~~~~~~~l~~t~~~ld~---~~l~~av~li~~A~-~I~i~G~G~ 138 (284)
T PRK11302 63 FPDFKLHLAQSLANGTPYVNRNVEEDDSPEAYTGKIFESAMASLDHARQSLDP---SAINRAVDLLTQAK-KISFFGLGA 138 (284)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHCCC-EEEEEECCC
T ss_conf 89999999999753673212347888999999999999999999999985599---99999999997189-589996485
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 37999999999875088611012330232023012104707898368780788766666320456279984478895452
Q gi|255764505|r 75 SGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154 (341)
Q Consensus 75 S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~ 154 (341)
|+.+|+.+...|.++|.++.+..-.....-....++++|++|+||+||+|+|++++++.||++|+++|+||+ ++|||++
T Consensus 139 S~~vA~~~~~kl~r~g~~~~~~~d~~~~~~~a~~~~~~Dvvi~iS~sG~t~e~i~~~~~Ak~~ga~vIaIT~-~~SpLa~ 217 (284)
T PRK11302 139 SAAVAHDAQNKFFRFNVPVVYFDDIVMQRMSCMNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIGITA-AGSPLAR 217 (284)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC-CCCHHHH
T ss_conf 099999999999843981464287899999997199988899973799987999999999987995899779-9981488
Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 14533768861554324752178999999999999999998503
Q gi|255764505|r 155 HADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRN 198 (341)
Q Consensus 155 ~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~ 198 (341)
+||++|.++..++ ++...|++|+.+||.+.|+|..+++.+.+
T Consensus 218 ~AD~~L~~~~~e~--~~~~~~~~sriaql~viD~L~~~~~~~~~ 259 (284)
T PRK11302 218 EATLALTLDVPED--TDIYMPMVSRIAQLTVIDVLATGFTLRRG 259 (284)
T ss_pred HCCEEEEECCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6898898467765--40110469999999999999999999824
No 11
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.93 E-value=2.2e-24 Score=197.81 Aligned_cols=187 Identities=21% Similarity=0.243 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 67888655765533--------------2457999999999999999999999720011366999999998279959999
Q gi|255764505|r 5 FSHFKSVTRKGHSL--------------MKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVIT 70 (341)
Q Consensus 5 ~~~~~~~~~~~~~~--------------~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~ 70 (341)
|++||..-+..... ..++.-+.+.+.+....++++.+ ++....+.+.+++++|.+|+ ||+++
T Consensus 63 f~efK~~l~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~l~~t---~~~~~~~~l~~av~~i~~A~-~I~i~ 138 (282)
T PRK11557 63 FPALKLALSEALASQPEPPSVPVHNQIRGDDPLRLVGEKLIKENTAAMYAT---LDVNSEEKLHECVTMLRSAR-RIILT 138 (282)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHCCC-CEEEE
T ss_conf 999999999998614564334212446767759999999999999999999---83368999999999996489-58999
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 33813799999999987508861101233023202301210470789836878078876666632045627998447889
Q gi|255764505|r 71 GIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS 150 (341)
Q Consensus 71 GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S 150 (341)
|+|.|+.+|+.+...|.++|.++.+....+..--.+..++++||+|+||+||+|+|++++++.||++|+++|+||++++|
T Consensus 139 G~G~S~~vA~~~~~kl~rig~~~~~~~d~~~~~~~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~Ak~~Ga~iIaIT~~~~s 218 (282)
T PRK11557 139 GIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGGKVLAITGFTPN 218 (282)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 70436999999999999809963740886899999981899998999859999789999999999879939997298998
Q ss_pred HHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54521453376886155432475217899999999999999999850
Q gi|255764505|r 151 VVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESR 197 (341)
Q Consensus 151 ~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~ 197 (341)
||+++||++|.++.++ .++...+++|+++||.+.|+|...++.++
T Consensus 219 pLa~~aD~~L~~~~~e--~~~~~~~~~s~~a~l~iiD~L~~~~~~~~ 263 (282)
T PRK11557 219 ALQQRASHCLYTIAEE--QATRSAAISSTHAQGMLTDLLFMALIQQD 263 (282)
T ss_pred CHHHHCCEEEEECCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1588699999847853--10134343999999999999999999978
No 12
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.90 E-value=5e-23 Score=187.95 Aligned_cols=112 Identities=45% Similarity=0.690 Sum_probs=106.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 75430551002388889874104662000000432323241234035676178--2337098834889789779987899
Q gi|255764505|r 227 GDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTV 304 (341)
Q Consensus 227 ~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~e 304 (341)
++++|+|+|++|+.||++.|.++++|+++|+|++|+++|+||++||||.+.++ ..+.+++++|+++|+++++++++.+
T Consensus 1 ~~~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~~~lvGiiT~~Dl~r~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~ 80 (114)
T cd04604 1 GDALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CCCCCEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCHHH
T ss_conf 99477889949399999999976997899997999399999899999998716664567974743567589938988699
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9999996799589998069848999858889743
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|+++|.+++++++||+|++++++|+||++||+||
T Consensus 81 a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA 114 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9999987795799999899989999988995469
No 13
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.88 E-value=5e-22 Score=180.71 Aligned_cols=109 Identities=27% Similarity=0.396 Sum_probs=102.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC---CCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617---823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK---DLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~---~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
++++|++++|+.||++.|.++++|+++|+|++|+++||+|++|++|.+.. ...+.+++++|+++|++++|++++.+|
T Consensus 2 rvitV~~~~ti~eA~~~M~~~~ig~l~Vvd~~g~lvGIiTe~Di~r~~~~~~~~~~~~~V~~vMt~~vitv~~~~~i~~a 81 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDV 81 (114)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCHHHH
T ss_conf 31298986939999999987499889999899959999994999999873079866789999615898899998909999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99999679958999806984899985888974
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
+++|.+++|+++||||++++++|+||.+|++|
T Consensus 82 ~~~M~~~~i~~lPVVD~~~~~vGiit~~Dilk 113 (114)
T cd04619 82 WQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHEEC
T ss_conf 99888769858899907995999999354542
No 14
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=99.88 E-value=4.9e-22 Score=180.75 Aligned_cols=129 Identities=37% Similarity=0.447 Sum_probs=119.9
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 98279959999338137999999999875088611012-33023202301210470789836878078876666632045
Q gi|255764505|r 60 IKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVH-AAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFS 138 (341)
Q Consensus 60 i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~-~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~ 138 (341)
|.+++ ||+|+|+|.|+.+|+..+..|.++|.+..+.+ +.|..|+.+..++++|++|+||+||+|+|+++.++.+|++|
T Consensus 2 l~~a~-rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g 80 (131)
T pfam01380 2 LAKAK-RIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGETRDLLEAAKLLKARG 80 (131)
T ss_pred CCCCC-EEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 76789-89999932699999999999998689877863658866067567999999999548986576898789999849
Q ss_pred CCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 627998447889545214533768861554324752178999999999999999
Q gi|255764505|r 139 IPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIA 192 (341)
Q Consensus 139 ~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~ 192 (341)
+++|+||++++|||++.||+.|.++.++|. +.+||.|.++||++.|+|+++
T Consensus 81 ~~~i~iT~~~~S~la~~ad~~l~~~~~~e~---~~~~t~s~~~~l~~l~~l~~~ 131 (131)
T pfam01380 81 AKIIAITDSKGSPLAREADHVLYIIAGPEA---GVASTKSLTLQLALLDALAIA 131 (131)
T ss_pred CEEEEEECCCCCHHHHHCCEEEECCCCCEE---EECCHHHHHHHHHHHHHHHHC
T ss_conf 969999899999789968998987998756---545689999999999999869
No 15
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.86 E-value=3.3e-21 Score=174.77 Aligned_cols=107 Identities=30% Similarity=0.440 Sum_probs=101.7
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC-CCCCHHHHCCCCCEEECCCCCHHHHHHHHH
Q ss_conf 5510023888898741046620000004323232412340356761782-337098834889789779987899999999
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL-NTLSVEDVMIKNPKVILEDTLLTVAMQLLR 310 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~-~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~ 310 (341)
+|+|++++.||+..|.++++++++|+|++++++|++|++|+||++.++. .+.+++++|+++|+++++++++.+|+++|.
T Consensus 6 ~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~l~GiiT~~Di~r~l~~~~~~~~~v~~im~~~~~~i~~~~~~~~a~~~m~ 85 (113)
T cd04607 6 LVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEILALMR 85 (113)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHHCCEEEEEECCCCHHHHHHHHH
T ss_conf 96994989999999987599789999799959999987277668762898456156752121299987998999999998
Q ss_pred HCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 6799589998069848999858889743
Q gi|255764505|r 311 QHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 311 ~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++++++||||++|+++|++|.+||++.
T Consensus 86 ~~~i~~lPVvd~~~~lvGiit~~Dll~~ 113 (113)
T cd04607 86 ERSIRHLPILDEEGRVVGLATLDDLLSK 113 (113)
T ss_pred HCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 7797499999789949999997993086
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.86 E-value=2.2e-21 Score=175.94 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=98.4
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH--CCCCCCCHHHHCCCCC--EEECCCCCHHHHHH
Q ss_conf 5510023888898741046620000004323232412340356761--7823370988348897--89779987899999
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH--KDLNTLSVEDVMIKNP--KVILEDTLLTVAMQ 307 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~--~~~~~~~v~~iMt~~p--~~I~~d~~i~eAl~ 307 (341)
+|.++++++||++.|.++++|+++|+|++++|+||+|++|++|.+. .+..+.|++++|+++| +++.|++++.+|++
T Consensus 5 tv~~~~si~eA~~~M~~~~ig~l~VVD~~~~LvGIiT~rDl~r~~~~~~~~~~~pV~~iMT~~P~vvt~~pd~~v~~A~~ 84 (118)
T cd04617 5 VVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAK 84 (118)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 98996999999999998399879998499959999878999999974898467829998577997199789993999999
Q ss_pred HHHHCCCCEEEEEECCC---EEEEEEEHHHHHH
Q ss_conf 99967995899980698---4899985888974
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQ---KAIGIVHFLDLLR 337 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~---~lvGiIt~~DLlk 337 (341)
+|.+++|++|||||+++ +++|+||..||+|
T Consensus 85 ~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~k 117 (118)
T cd04617 85 KLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHCCCCEECEEECCCCCEEEEEEEECCCEEC
T ss_conf 999829998567943997408999997751504
No 17
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.86 E-value=6.4e-21 Score=172.64 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=101.9
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC-CCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617-82337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-DLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~-~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++|+|+++++++||++.|.+++.++++|+|++++++||||++|++|.... ...+.+++++|+++|++++|++++.+|++
T Consensus 2 dv~tv~~~~tl~eA~~~m~~~~~~~~~Vvd~~~~l~GIiT~~Di~~~~~~~~~~~~~V~~iMt~~~itv~~~~~~~~a~~ 81 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALD 81 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
T ss_conf 97399962939999999998499889999699979999994999999852687788889960699879999793999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.++++++|||+|+ |+++|+||.+|+++.
T Consensus 82 ~M~~~~i~~LPVvd~-~klvGiit~~Dil~k 111 (111)
T cd04626 82 IMREKQIGRLPVVDD-NKLIGVVRTKDILDK 111 (111)
T ss_pred HHHHHCCCEEEEEEC-CEEEEEEEHHHHCCC
T ss_conf 999809988999999-999999996981488
No 18
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.85 E-value=6.3e-21 Score=172.66 Aligned_cols=109 Identities=32% Similarity=0.421 Sum_probs=100.5
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCC--HHH
Q ss_conf 43055100238888987410466200000043232324123403567617--82337098834889789779987--899
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTL--LTV 304 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~--i~e 304 (341)
+..+|+|++++.||+..|.+++.++++|+|++++++||+|++|++|.+.. ++.+.+++++|+++++++.+++. +.+
T Consensus 2 ~pitv~pd~tv~ea~~~M~~~~~~~~~vV~~~~~lvGIvT~~Di~r~~~~~~~~~~~~v~~vMt~~~itv~~~~~~~i~~ 81 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFT 81 (115)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCCCHHH
T ss_conf 69996991999999999998399469999379929999986999999985998134898896368967983899726999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999999679958999806984899985888974
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
|+++|.+++|++|||||++|+++|+||.+||+|
T Consensus 82 a~~~M~~~~i~~lpVvd~~g~lvGiit~~Dilk 114 (115)
T cd04620 82 ALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred HHHHHHHCCEEEEEEECCCCEEEEEEEHHHCCC
T ss_conf 999987559528999957997999999256232
No 19
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.84 E-value=2e-20 Score=169.06 Aligned_cols=109 Identities=22% Similarity=0.385 Sum_probs=100.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC---CCCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 543055100238888987410466200000043232324123403567617---82337098834889789779987899
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK---DLNTLSVEDVMIKNPKVILEDTLLTV 304 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~---~~~~~~v~~iMt~~p~~I~~d~~i~e 304 (341)
+.+.+|.|++++.||++.|.++++|+++|+ ++|+++||||++|++|.+.. ++.+.+++++|+++|++++|++++.+
T Consensus 1 ~~V~Tv~pd~~l~eA~~~M~~~~i~~lvV~-~~g~lvGIiT~rDi~~~~~~~~~~~~~~~V~~iMt~~~~tv~~~~~i~~ 79 (112)
T cd04625 1 DTIYTVAPETLLSEAVATMAEQDLGSLVVM-ERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDE 79 (112)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEE-ECCEEEEEEEHHHHHHHHHHCCCCCCCCCHHHHEECCCEEECCCCHHHH
T ss_conf 947998995979999999987499879995-7999999998799999999709980117088833489779989996999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9999996799589998069848999858889743
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|+++|.++++++|||+|+ |+++|+||.+|++||
T Consensus 80 a~~~M~~~~i~~lpVvd~-g~lvGiit~~Di~rA 112 (112)
T cd04625 80 VRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred HHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 999768669769999999-999999997996359
No 20
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.84 E-value=2.4e-20 Score=168.44 Aligned_cols=109 Identities=32% Similarity=0.457 Sum_probs=104.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
++.+|.|++++.||++.|.+++++++||+|+ ++++|++|++|++|++.++....+++++|+++|+++++++++.+|+++
T Consensus 2 ~vvtv~p~~sl~ea~~~m~~~~i~~~pVvd~-~~lvGiit~~Di~~~~~~~~~~~~V~~~M~~~~~tv~~d~~l~~~~~~ 80 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAIRL 80 (110)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCHHHHHCCCCCCEECCCCCHHHHHHH
T ss_conf 9479689498999999999709988999989-999999966898999873797780345204897298589969999999
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|.+++++++||+|++|+++|+||.+|++||
T Consensus 81 m~~~~v~~l~Vvd~~~~lvGIiT~~Dllka 110 (110)
T cd04588 81 MNKHNVGRLIVTDDEGRPVGIITRTDILRS 110 (110)
T ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 987799789999669999999982483468
No 21
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.84 E-value=2.7e-20 Score=168.02 Aligned_cols=107 Identities=30% Similarity=0.324 Sum_probs=100.7
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 55100238888987410466200000043232324123403567617--8233709883488978977998789999999
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQLL 309 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM 309 (341)
+|.+++++.+|+..|.++++++++|+|++++++||+|++|++|...+ ...+.+++++|+++|+++++++++.+|+++|
T Consensus 5 tv~~d~~l~~A~~~m~~~~~~~~pVvd~~~~lvGivT~~Di~~~~~~~~~~~~~~v~~iMt~~~~ti~~~~~l~~a~~~m 84 (113)
T cd04615 5 CVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKARWLM 84 (113)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHH
T ss_conf 98996999999999997399789999489979999995999999980798245899992756978990899399999999
Q ss_pred HHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 96799589998069848999858889743
Q gi|255764505|r 310 RQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 310 ~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.+++++++||||++|+++|+||.+|++|.
T Consensus 85 ~~~~i~~lpVvd~~g~lvGiit~~Dilr~ 113 (113)
T cd04615 85 SNNNISRLPVLDDKGKVGGIVTEDDILRK 113 (113)
T ss_pred HHHCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 97499489999799939999996883269
No 22
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.84 E-value=1.7e-20 Score=169.48 Aligned_cols=109 Identities=26% Similarity=0.345 Sum_probs=102.1
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 30551002388889874104662000000432323241234035676178--2337098834889789779987899999
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
-|+|.+++++.||++.|.++++++++|+|++|+++||||++|++|++..+ ....+++++|+++++++.+++++.+|++
T Consensus 3 P~tV~~~~tv~ea~~~m~~~~~~~~pVvD~~g~lvGIvT~~Dl~r~~~~~~~~~~~~v~~vmt~~~~tv~pd~~l~~al~ 82 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHALD 82 (115)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHHH
T ss_conf 83889919999999999874998999994999889998899999999738886677945430389668999994999999
Q ss_pred HHHHCCCCEEEEEECC--CEEEEEEEHHHHHHC
Q ss_conf 9996799589998069--848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDC--QKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~--~~lvGiIt~~DLlka 338 (341)
+|.++++++|||||++ |+++|+||.+|+++|
T Consensus 83 ~M~~~~i~~LPVVd~~~~~~lvGiit~~Dil~A 115 (115)
T cd04593 83 RMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHCCCCEEEEEECCCCCEEEEEEEHHHHHCC
T ss_conf 999869988999978999989999997996569
No 23
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.84 E-value=2.3e-20 Score=168.58 Aligned_cols=110 Identities=27% Similarity=0.437 Sum_probs=104.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC-CCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 4305510023888898741046620000004323232412340356761782-337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL-NTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~-~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++.++++++++.||++.|.++++++++|+|++++++|++|++|++|++.++. .+.+++++|+++|+++++++++.+|++
T Consensus 2 ~vvtv~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~lvGiiT~~Di~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~a~~ 81 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCCCCCCEEEEECCCCEEECCCCCHHHHHH
T ss_conf 97897893959999999986299889999399829999982045889864874344204565167167879998999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||||++|+++|+||.+|++|+
T Consensus 82 ~m~~~~~~~l~Vvd~~g~lvGiit~~Dilke 112 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISIRDLVRE 112 (112)
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 9997498399899899999999980772569
No 24
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.83 E-value=1e-19 Score=163.83 Aligned_cols=137 Identities=30% Similarity=0.367 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHH
Q ss_conf 69999999982799599993381379999999998750886110123302320230121047078983687807887666
Q gi|255764505|r 52 QFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAIL 131 (341)
Q Consensus 52 ~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~ 131 (341)
.+++++++|.+++ ||+++|.|.|+.+|+.++..|..+|.++.++...+..+.+...++++|++|++|+||+|+++++++
T Consensus 2 ~i~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~~~~~~~~~ 80 (139)
T cd05013 2 ALEKAVDLLAKAR-RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAA 80 (139)
T ss_pred HHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 7999999997599-289998081599999999997258982798796277888874599999999976863637899999
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 663204562799844788954521453376886155432475217899999999999999
Q gi|255764505|r 132 YYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAI 191 (341)
Q Consensus 132 ~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav 191 (341)
+.||++|+++|+||++.+||++++||+.|.++..+. +.+..+.+|++.++.+.|.|..
T Consensus 81 ~~ak~~g~~ii~IT~~~~s~l~~~ad~~l~~~~~~~--~~~~~~~~s~~~~~~l~d~l~~ 138 (139)
T cd05013 81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEEG--DFRSSAFSSRIAQLALIDALFL 138 (139)
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHCCEEEECCCCCC--CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999986997999979999977996999998288655--5776884999999999999995
No 25
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.83 E-value=6.8e-20 Score=165.18 Aligned_cols=110 Identities=27% Similarity=0.339 Sum_probs=99.9
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC-------------------------CCC
Q ss_conf 5430551002388889874104662000000432323241234035676178-------------------------233
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD-------------------------LNT 282 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-------------------------~~~ 282 (341)
+++.+|.|++++.||+..|.+++++.+||+|++|+++||+|++|+.+.+... ...
T Consensus 1 kdVitv~p~~tl~ea~~~m~~~~i~~lpVvd~~g~lvGivT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 1 EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 98689899497999999998749977999959993999998799886663145443102333331010023321014468
Q ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 70988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 283 LSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 283 ~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.+++++|+++|++++|++++.+|+++|.++++++|||||+ |+++|+||..|++|+
T Consensus 81 ~~v~diMt~~vitv~~d~~l~~a~~~M~~~~i~~lPVvd~-~~lvGiIt~~Dilre 135 (135)
T cd04621 81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICRE 135 (135)
T ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHCCC
T ss_conf 8998938899889989893999999999719988999989-999999985881168
No 26
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.83 E-value=7.7e-20 Score=164.77 Aligned_cols=109 Identities=31% Similarity=0.465 Sum_probs=100.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCH-HHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 43055100238888987410466200000043232324123403-5676178--23370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI-FRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDl-rR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
++.++++++++.||++.|.++++++++|+| +++++|++|++|+ +|.+.++ ....+++++|+++|+++++++++.+|
T Consensus 2 ~~vti~~~~tl~~a~~~m~~~~~~~v~V~d-~~~~vGiiT~~Di~~~~~~~~~~~~~~~v~~iM~~~~i~v~~~~~l~~a 80 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHHHHHHHCCCCHHHCCHHHHHCCCCEEEECCCCHHHH
T ss_conf 977968939899999999972998899998-9999999963278899997399820077678641576799889987999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 999996799589998069848999858889743
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++|.+++++++||+|++++++|+||.+|++||
T Consensus 81 ~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra 113 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 999985796589999089989999997995477
No 27
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.83 E-value=9.5e-20 Score=164.10 Aligned_cols=111 Identities=29% Similarity=0.354 Sum_probs=101.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC---------------CCCCCHHHHCCCC
Q ss_conf 5430551002388889874104662000000432323241234035676178---------------2337098834889
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD---------------LNTLSVEDVMIKN 292 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~---------------~~~~~v~~iMt~~ 292 (341)
+++.+|.+++++.+|+..|.+++++++||+|++|+++||+|++|+.+.+... ..+.+++++|+++
T Consensus 1 kdvvTv~~~~~l~~a~~lm~~~~i~~lPVvd~~g~lvGiiT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~~ 80 (128)
T cd04632 1 EDVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP 80 (128)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCHHCCHHHHCCHHHHHHCCCHHHHCCCC
T ss_conf 99869899592999999999839977999968997899998899999885321010112210012234067999966799
Q ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEE--ECCCEEEEEEEHHHHHHC
Q ss_conf 7897799878999999996799589998--069848999858889743
Q gi|255764505|r 293 PKVILEDTLLTVAMQLLRQHNISVLMVV--DDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 293 p~~I~~d~~i~eAl~lM~~~kI~~LpVV--D~~~~lvGiIt~~DLlka 338 (341)
+++++|++++.+|+++|.+++++++||| |++|+++|+||..|++||
T Consensus 81 vitv~~~~~i~~a~~~M~~~~i~~lpVv~~dd~~~lvGIiT~~DilrA 128 (128)
T cd04632 81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 879999293999999999779978966847899989999996996469
No 28
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.83 E-value=9.7e-20 Score=164.03 Aligned_cols=110 Identities=26% Similarity=0.354 Sum_probs=100.8
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH-----------CCCCCCCHHHHCCCCCEEEC
Q ss_conf 4305510023888898741046620000004323232412340356761-----------78233709883488978977
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH-----------KDLNTLSVEDVMIKNPKVIL 297 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~-----------~~~~~~~v~~iMt~~p~~I~ 297 (341)
++.+|.|++++.+|++.|.+++++++||+|++|+++|++|++|+.|+.. ......+++++|+++|++++
T Consensus 2 ~vitv~~d~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~itv~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHCCCCCEEEC
T ss_conf 99996892979999999997199489999189829999998998765540012003443145346899996868987998
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 99878999999996799589998069848999858889743
Q gi|255764505|r 298 EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 298 ~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++++.+|+++|.+++++++||||++|+++|+||..|++||
T Consensus 82 ~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiIt~~DilrA 122 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 96939999998898099889899379989999997996369
No 29
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.82 E-value=9.4e-20 Score=164.15 Aligned_cols=109 Identities=30% Similarity=0.470 Sum_probs=101.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC---CCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617---823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK---DLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~---~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
++.+|.+++|+.||++.|.++++++++|+|++++++|++|++|++|.+.. +..+.+++++|+++|.++++++++.+|
T Consensus 2 ~vvti~~~~tl~ea~~~m~~~~~~~l~Vvd~~~~l~Giit~~Di~~~~~~~~~~~~~~~V~~iM~~~~~~v~~~~~l~~a 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHCCCCHHHCHHHHHCCCEEEEEECCCCHHHH
T ss_conf 97696893979999999997399889999089829999976899999986499846640123121102899169919999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 999996799589998069848999858889743
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++|.+++++++||+|+ |+++|+||.+|++||
T Consensus 82 ~~~m~~~~i~~lpV~d~-~~lvGiit~~Dllra 113 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred HHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 99999769259999999-999999997996469
No 30
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.82 E-value=8.1e-20 Score=164.59 Aligned_cols=107 Identities=32% Similarity=0.433 Sum_probs=98.7
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCH-HHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 055100238888987410466200000043232324123403-5676178--2337098834889789779987899999
Q gi|255764505|r 231 PLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI-FRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 231 p~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDl-rR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
.+|+|++++.||++.|.++++++++|+|+ ++++|++|++|+ +|.+.++ ..+.+++++|+++|+++++++++.+|++
T Consensus 4 itv~p~~ti~ea~~~M~~~~i~~~~V~d~-~~l~GivT~~Dl~~~~~~~~~~~~~~~v~~iMt~~~~tv~~~~~l~~a~~ 82 (113)
T cd04587 4 ATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEALH 82 (113)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEEHHHHHHHHHCCCCHHHCEEEEEECCCCEEEECCCCHHHHHH
T ss_conf 89899499999999999729988999989-99999998459878998739983208988666168469907999999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||+|++|+++|+||.+||++|
T Consensus 83 ~m~~~~i~~lpVvd~~~~~vGiit~~Dil~A 113 (113)
T cd04587 83 LMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113 (113)
T ss_pred HHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 9987794199999269989999984885278
No 31
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.82 E-value=1.3e-19 Score=163.19 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=102.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf 430551002388889874104662000000432323241234035676178--233709883488978977998789999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVAM 306 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eAl 306 (341)
++++|++++++.||+..|.+++++++||+|++|+++|+||++|+++.+.+. ....+++++|+++|.++++++++.+|+
T Consensus 2 dvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~~lvGiit~~Dl~~~l~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~ 81 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCEEEHHCCCCCEEEECCCCHHHHH
T ss_conf 97695890989999999986199789999289949999999999999970566557293120362965991367889999
Q ss_pred HHHHHCCCCEEEEEEC-CCEEEEEEEHHHHHHC
Q ss_conf 9999679958999806-9848999858889743
Q gi|255764505|r 307 QLLRQHNISVLMVVDD-CQKAIGIVHFLDLLRF 338 (341)
Q Consensus 307 ~lM~~~kI~~LpVVD~-~~~lvGiIt~~DLlka 338 (341)
++|.+++++++||||+ +|+++|+||..|+++|
T Consensus 82 ~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A 114 (114)
T cd04613 82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred HHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 999975975999998999989999998995359
No 32
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=2.1e-19 Score=161.59 Aligned_cols=109 Identities=28% Similarity=0.405 Sum_probs=100.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC-------CCCCCCHHHHCCCCCEEECCCC
Q ss_conf 543055100238888987410466200000043232324123403567617-------8233709883488978977998
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-------DLNTLSVEDVMIKNPKVILEDT 300 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~-------~~~~~~v~~iMt~~p~~I~~d~ 300 (341)
+++.+|.|++|+.+|++.|.+++++++||+|++|+++|+||++|+++++.+ ...+.+++++|++++.++++++
T Consensus 1 k~Vvtv~~~~tl~~A~~~m~~~~i~~lPVvd~~gklvGiit~~Di~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv~~~~ 80 (116)
T cd04643 1 EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA 80 (116)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCHHHHCCCCHHHHHCCCCEEEECCC
T ss_conf 97699999492999999999749987989869994999988999999874365322023116687795156988990799
Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 78999999996799589998069848999858889743
Q gi|255764505|r 301 LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 301 ~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++.+++++|.++++ +||||++|+++|+||..|++||
T Consensus 81 ~i~~~~~~m~~~~~--lpVVD~~~~lvGIITr~DilkA 116 (116)
T cd04643 81 DIEEILHLLIDQPF--LPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CHHHHHHHHHHCCE--EEEEECCCEEEEEEEHHHHHCC
T ss_conf 99999999987898--9999459999999992795579
No 33
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=3.4e-19 Score=160.11 Aligned_cols=109 Identities=33% Similarity=0.445 Sum_probs=100.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC----------------------CCCCCHH
Q ss_conf 430551002388889874104662000000432323241234035676178----------------------2337098
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD----------------------LNTLSVE 286 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~----------------------~~~~~v~ 286 (341)
++.+|.+++++.||++.|.+++++++||+|++|+++|+||++|+.|.+... ....+++
T Consensus 2 dvvtv~~~~tl~ea~~~m~~~~~~~lpVvd~~~~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHH
T ss_conf 98796891979999999997299789999599939999888999999862676200000000000023331020389999
Q ss_pred HHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 8348897897799878999999996799589998069848999858889743
Q gi|255764505|r 287 DVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 287 ~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++|+++|+++++++++.+|+++|.+++++++|||| +|+++|+||..|++||
T Consensus 82 diMt~~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd-~~~lvGiIt~~Dilra 132 (132)
T cd04636 82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKLVGIISRGDIIRS 132 (132)
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 96789987999979499999999962987899998-9999999996882349
No 34
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=2.6e-19 Score=160.93 Aligned_cols=109 Identities=22% Similarity=0.270 Sum_probs=100.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC----CCCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 43055100238888987410466200000043232324123403567617----82337098834889789779987899
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK----DLNTLSVEDVMIKNPKVILEDTLLTV 304 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~----~~~~~~v~~iMt~~p~~I~~d~~i~e 304 (341)
+..+|.|++++.||++.|.+++++++||+|++++++|++|++|++|.+.. +....+++++|+++|.++++++++.+
T Consensus 2 ~pvtv~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGiit~~Dll~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~~~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHCCCCCCCEEHHHCCCCCEEEECCCCHHH
T ss_conf 89997992999999999997199789999489929999967899999977540588765918851468879957999999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9999996799589998069848999858889743
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|+++|.+++++++||+|+ |+++|+||..|++||
T Consensus 82 a~~~m~~~~~~~lpVvd~-g~lvGiIt~~DilrA 114 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred HHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 999988669839999989-999999997996339
No 35
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.81 E-value=4e-19 Score=159.53 Aligned_cols=110 Identities=29% Similarity=0.427 Sum_probs=99.4
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC------------------------CCCCC
Q ss_conf 543055100238888987410466200000043232324123403567617------------------------82337
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK------------------------DLNTL 283 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~------------------------~~~~~ 283 (341)
.++.+|.+++++.||++.|.+++++++||+|++|+++|+||++|+.|.... ...+.
T Consensus 2 ~~vitv~~~~tl~~a~~~m~~~~i~~lpVvd~~~~lvGiit~~Dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 99989999393999999999739967999908997999998189764454156541145554302310345543044798
Q ss_pred CHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 0988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 284 SVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 284 ~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|+++|+++|.++++++++.+|+++|.+++++++||||+ |+++|+||..|++||
T Consensus 82 ~V~~iM~~~~~~v~~~~~l~~~~~~m~~~~i~~lpVvd~-~~lvGiIt~~DilkA 135 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG-GRLVGIVSRADLLRA 135 (135)
T ss_pred CHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 989957899879959795999999999759609999999-999999997996459
No 36
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=3.8e-19 Score=159.73 Aligned_cols=109 Identities=27% Similarity=0.440 Sum_probs=99.6
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC------------CCCCCHHHHCCCCCEEE
Q ss_conf 430551002388889874104662000000432323241234035676178------------23370988348897897
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD------------LNTLSVEDVMIKNPKVI 296 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~------------~~~~~v~~iMt~~p~~I 296 (341)
++.+|.|++++.+|+..|.+++++++||+| +|+++|++|++|++|.+... ....+++++|+++|+++
T Consensus 2 ~viTv~p~~tl~~a~~~m~~~~i~~lpVvd-~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~itv 80 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE-DNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITV 80 (122)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHHCCCCCHHHHCCCHHHCCCHHHHCCCCCEEE
T ss_conf 749988969699999999874998899998-9999999888999987500245310221121230689999463898399
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 799878999999996799589998069848999858889743
Q gi|255764505|r 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 297 ~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++++++.+|+++|.+++++++||||++|+++|+||..|++|-
T Consensus 81 ~~~~~l~~a~~~m~~~~i~~lPVvd~~~~lvGiIT~~Diik~ 122 (122)
T cd04637 81 SPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 999849999999997493089999689989999996883275
No 37
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.81 E-value=5.3e-19 Score=158.68 Aligned_cols=111 Identities=26% Similarity=0.351 Sum_probs=101.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC------------CCCCCCHHHHCCCCCEE
Q ss_conf 543055100238888987410466200000043232324123403567617------------82337098834889789
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK------------DLNTLSVEDVMIKNPKV 295 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~------------~~~~~~v~~iMt~~p~~ 295 (341)
+++.+|.|++++.||++.|.+++++++||+|++|+++|++|++|+.+.... .....+++++|++++.+
T Consensus 2 rdvvtv~~~~tl~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~~~ 81 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT 81 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCEE
T ss_conf 89699899397999999999729978999956980888856999998775046531012221055788989957799869
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 7799878999999996799589998069848999858889743
Q gi|255764505|r 296 ILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 296 I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++++++.+|+++|.+++++++||||++|+++|+||..|+++|
T Consensus 82 v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiIt~~Dil~A 124 (124)
T cd04600 82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred ECCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 9898979999999997793499999579989999978997469
No 38
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=3.6e-19 Score=159.92 Aligned_cols=106 Identities=30% Similarity=0.445 Sum_probs=98.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 54305510023888898741046620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
+++.+|++++|+.||++.|.+++++++||+|++++++|++|++|+.|. ....++.++|+++|++++|++++.+|++
T Consensus 1 kdvvtv~~~~tv~ea~~lm~~~~i~~lpVvd~~~~lvGivT~~Dl~~~----~~~~~v~~iMt~~~~tv~~~~~~~~a~~ 76 (106)
T cd04638 1 ENVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN----PEEEQLALLMTRDPPTVSPDDDVKEAAK 76 (106)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHC----CCCCHHHHHHCCCCEECCCCCCHHHHHH
T ss_conf 998999994969999999997699989999389999999897896448----7502446753589736799491999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||||+ |+++|+||..|++||
T Consensus 77 ~m~~~~i~~lpVvd~-~~lvGiIt~~DilkA 106 (106)
T cd04638 77 LMVENNIRRVPVVDD-GKLVGIVTVADIVRA 106 (106)
T ss_pred HHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 998769759999999-999999997995359
No 39
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.81 E-value=4.2e-19 Score=159.40 Aligned_cols=109 Identities=33% Similarity=0.405 Sum_probs=100.8
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC-CCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 4305510023888898741046620000004323232412340356761782-337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL-NTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~-~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++.+|.|++++.||++.|.++++++++|+| +++++|++|++|++|++.++. .+.+++++|+++|.++++++++.+|++
T Consensus 2 ~vvTv~p~~tv~ea~~~m~~~~i~~~~V~~-~~~~vGiiT~~Di~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~~~~a~~ 80 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD-DGRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 719988969799999999971998899997-9999999985598998742488778889971068339978999999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||+|++|+++|+||.+|++|.
T Consensus 81 ~m~~~~i~~lpVvd~~~~~vGiiT~~Dilr~ 111 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQTDLLQN 111 (111)
T ss_pred HHHHHCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9997187399999469989999985684278
No 40
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.80 E-value=2e-19 Score=161.81 Aligned_cols=108 Identities=31% Similarity=0.454 Sum_probs=101.4
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 54305510023888898741046620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
.++.++.|+++++||++.|.+++++++||+|++|+++|+||++|++|.+..+ ..+++++|+++|+++++++++.+|++
T Consensus 2 r~vvtv~~~~tv~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~Di~~~~~~~--~~~v~~im~~~~~~~~~~~~~~~a~~ 79 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD--KKSVEDIMTRNVITATPDEPIDVAAR 79 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEECHHHHHHHHCC--CCCHHHCEEECHHHHHHHHHHHHHHH
T ss_conf 8998989939999999999972998899997999199999622788898707--97633604300120146558999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999679958999806984899985888974
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
+|.+++++++||||++|+++|+||..|++|
T Consensus 80 ~m~~~~i~~lPVvD~~~~lvGiiT~~Di~k 109 (110)
T cd04605 80 KMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 999839619999918998999999377211
No 41
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.80 E-value=3.7e-19 Score=159.77 Aligned_cols=107 Identities=27% Similarity=0.344 Sum_probs=100.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 54305510023888898741046620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
+++.+++|++|+.+|++.|.+++++++||+|++++++|++|++|+.+. ..+.+++++|+++|+++++++++.+|++
T Consensus 2 ~dv~~l~p~~tv~~a~~lm~~~~~~~~PVvd~~~~lvGivt~~Di~~~----~~~~~v~~iM~~~~~~v~~~~~~~~~~~ 77 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK----DPDTTIEKVMTKNPITVNPKTSVASVAH 77 (108)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHC----CCCCCHHHHEECCCCCCCCCCCHHHHHH
T ss_conf 988898999979999999998599889999689909999997997517----9887267850047620599988999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||||++|+++|+||..|++||
T Consensus 78 ~m~~~~~~~lPVVde~~~lvGiIT~~Dil~A 108 (108)
T cd04596 78 MMIWEGIEMLPVVDDNKKLLGIISRQDVLKA 108 (108)
T ss_pred HHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9998498778999169959999997996319
No 42
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.80 E-value=5.3e-19 Score=158.68 Aligned_cols=109 Identities=28% Similarity=0.412 Sum_probs=100.0
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH-----------CCCCCCCHHHHCCCCCEEEC
Q ss_conf 4305510023888898741046620000004323232412340356761-----------78233709883488978977
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH-----------KDLNTLSVEDVMIKNPKVIL 297 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~-----------~~~~~~~v~~iMt~~p~~I~ 297 (341)
++.+|++++++.||++.|.+++++++||+|++++++|++|++|++++.. ......+++++|+++|++++
T Consensus 2 ~vvtv~~~~sl~~a~~lm~~~~~~~lpVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHCCCCCCEEC
T ss_conf 98896892989999999997299889999089939999658998752201220024442025146899996679985898
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 99878999999996799589998069848999858889743
Q gi|255764505|r 298 EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 298 ~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++++.+|+++|.+++++++||+|+ |+++|+||.+|++|.
T Consensus 82 ~~~~l~~a~~~m~~~~i~~lpVvd~-~~lvGivt~~Dilr~ 121 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLRT 121 (121)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 9995999999988669619999999-999999982260066
No 43
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.80 E-value=9.9e-19 Score=156.70 Aligned_cols=109 Identities=30% Similarity=0.433 Sum_probs=99.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC------------CCCCCHHHHCCCCCEEE
Q ss_conf 430551002388889874104662000000432323241234035676178------------23370988348897897
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD------------LNTLSVEDVMIKNPKVI 296 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~------------~~~~~v~~iMt~~p~~I 296 (341)
+..+|.|++++.||++.|.+++++++||+| +++++|++|++|+++.+..+ ..+.++.++|+++|+++
T Consensus 2 dpvti~~~~tl~ea~~~m~~~~~~~lpVvd-~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv 80 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD-RGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITV 80 (122)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHCCCCCEEE
T ss_conf 989968929699999999973998899998-9999999988999987750465533355421203889999577898899
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 799878999999996799589998069848999858889743
Q gi|255764505|r 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 297 ~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++++++.+|+++|.+++++++||||++|+++|+||..|++||
T Consensus 81 ~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiiT~~DilkA 122 (122)
T cd04585 81 SPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred ECCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 388669999999987598789999589989999987897469
No 44
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.80 E-value=1e-18 Score=156.63 Aligned_cols=110 Identities=34% Similarity=0.440 Sum_probs=100.8
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCHHHHHHCC-------------CCCCCHHHHCCCCCE
Q ss_conf 43055100238888987410466200000043-2323241234035676178-------------233709883488978
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNFHKD-------------LNTLSVEDVMIKNPK 294 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDlrR~l~~~-------------~~~~~v~~iMt~~p~ 294 (341)
++.++.+++|+.||++.|.+++++++||+|++ ++++|++|++|+.+.+..+ ..+.+++++|+++|.
T Consensus 2 ~vvtv~~~~tl~ea~~~m~~~~v~~~PVvd~~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~v~ 81 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI 81 (125)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHCCCHHHCCCCHHHHCCCCCE
T ss_conf 97797990949999999998399889999799995999999999999873354310121011023217899995668988
Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 97799878999999996799589998069848999858889743
Q gi|255764505|r 295 VILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 295 ~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++++++++.+|+++|.+++++++||||++|+++|+||..|++||
T Consensus 82 tv~~~~~l~~a~~~m~~~~i~~lpVvd~~g~~~GiIt~~DilrA 125 (125)
T cd04631 82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 99799998999999986395099999589939999988997369
No 45
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.79 E-value=1.4e-18 Score=155.59 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=104.6
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
++.++.|++++.+|+..|.+++.+.+||+|++|+++|++|..|++|++..+..+.+++++|++++.+++|++++.+|++.
T Consensus 2 ~~~Tv~p~~tl~~a~~~~~~~~~~~~PVvd~~g~lvGivt~~di~~~l~~~~~~~~V~~vM~~~v~tv~~~~~l~~~~~~ 81 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVLRL 81 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf 88792998979999999997199789999389988999989999999872699970576354698799899949999999
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99679958999806984899985888974
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
|.+++++++||||++|+++|+||..|+++
T Consensus 82 m~~~~~~~lpVVd~~g~lvGivT~~Di~E 110 (111)
T cd04639 82 MQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 99589988989957992999999788544
No 46
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.79 E-value=1.7e-18 Score=155.01 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=95.9
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 3055100238888987410466200000043232324123403567617--82337098834889789779987899999
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
..+|.+++|+.||++.|.+++.|+++|.+++ +++||||++|++|.+.. ...+.+++++|+++|+++++++++.+|++
T Consensus 3 pvtv~~~~ti~ea~~~M~~~~i~~~vV~~~~-~~~GIvT~~Dl~~~~~~~~~~~~~~V~~vms~~~~ti~~~~~~~~a~~ 81 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDGD-PRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNALL 81 (111)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
T ss_conf 9899992989999999997099889997699-279999979989999829996788999928799989999792999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999679958999806984899985888974
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
+|.+++++++||+|+ ++++|+||.+||+.
T Consensus 82 ~M~~~~i~~lpV~d~-~~~vGivt~~Dil~ 110 (111)
T cd04589 82 LMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHCCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf 999879808899989-99999999688228
No 47
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.79 E-value=2.1e-17 Score=147.03 Aligned_cols=226 Identities=23% Similarity=0.228 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHH
Q ss_conf 999999999999999999-720011366999999998279959999338137999999999875-088611012330232
Q gi|255764505|r 26 CALRSIIAEKRGLSSLES-SLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAS-TGTPSFFVHAAEASH 103 (341)
Q Consensus 26 ~a~~~l~~e~~al~~l~~-~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s-~G~~a~~~~~~ea~H 103 (341)
-..|-|..+.++|.++-+ .++.. .-....+.+.+++ ||+|.|+|+|.+.|.-...-|.+ .++|...-.++|.-+
T Consensus 253 fMlKEI~EQP~~i~~tl~~ri~~~---~~~~~~~~l~~i~-~I~ivaCGTSyhA~lv~ky~~E~la~ipv~v~~ASEFry 328 (604)
T PRK00331 253 FMLKEIYEQPEVIRDTLEGRLDED---GEIDLDEDLKKID-RIYIVACGTSYHAGLVAKYWIESLAGIPVEVEIASEFRY 328 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEECHHHCC
T ss_conf 899999754899999998650866---5222599986377-589997256899999999999996499972888612034
Q ss_pred HCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 02301210470789836878078876666632045627998447889545214533768861554324752178999999
Q gi|255764505|r 104 GDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQL 183 (341)
Q Consensus 104 gdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l 183 (341)
.+ ..+.+++++|+||+||||.+++.+++.+|++|+++++||+.++|++++.||+.+++...+| .+.|.|.+.|+|+
T Consensus 329 ~~-~~~~~~~l~i~iSQSGET~Dtl~al~~ak~~ga~tiaIvNv~~Ssiar~sD~~i~~~aGpE---i~VASTKaftsQl 404 (604)
T PRK00331 329 RD-PVLSPNTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTLARESDLVLYTHAGPE---IGVASTKAFTTQL 404 (604)
T ss_pred CC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCE---EEECCCCHHHHHH
T ss_conf 57-7766643899975788837899999999877994898606899532314581788557235---7431230379999
Q ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCE
Q ss_conf 9999999999985033-878887531100111124333332104754305510023888898741046620000004323
Q gi|255764505|r 184 AIGDALAIALLESRNF-SENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQK 262 (341)
Q Consensus 184 ~~~Dalav~l~~~~~~-t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~ 262 (341)
+..-.|+..+.+.||. +.++... +-+.|..+-+.+.. .+.....+++....+.+.+. ++++.. |-
T Consensus 405 ~~l~llal~la~~~~~~~~~~~~~------~~~~L~~lp~~i~~-----~l~~~~~i~~ia~~~~~~~~--~~~lGr-G~ 470 (604)
T PRK00331 405 AVLYLLALALAKARGTLSAEEEAD------LVHELRELPALIEQ-----VLDLEEQIEELAEDFADKRN--ALFLGR-GI 470 (604)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHH------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCC--EEEECC-CC
T ss_conf 999999999999839999999999------99999999999999-----98536999999999844564--899726-78
Q ss_pred EEEEEECCCHH
Q ss_conf 23241234035
Q gi|255764505|r 263 LKGIITEGDIF 273 (341)
Q Consensus 263 liGIITdgDlr 273 (341)
..++--+|-|+
T Consensus 471 ~~~~A~EgALK 481 (604)
T PRK00331 471 DYPVALEGALK 481 (604)
T ss_pred CHHHHHHHHHH
T ss_conf 62778888887
No 48
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.79 E-value=1e-18 Score=156.52 Aligned_cols=100 Identities=23% Similarity=0.165 Sum_probs=93.5
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 55100238888987410466200000043232324123403567617823370988348897897799878999999996
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQ 311 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~ 311 (341)
+|.|++++++|++.|.+++++++||+| +++++||+|++|+.|. ...++.++|++++.+++|++++.+|+++|.+
T Consensus 5 tV~pd~tV~eA~~lM~~~~i~~lPVvd-~~klvGIvt~rDi~~~-----~~~~v~d~Mt~~v~tv~p~~~l~ea~~lM~~ 78 (104)
T cd04594 5 KVKDYDKVYEAKRIMIENDLLSLPVVD-YNKFLGAVYLKDIENA-----TYGDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHHHC-----CCCCHHHEEECCCEEECCCCCHHHHHHHHHH
T ss_conf 989999399999999983988788998-9999999997996524-----6998445476398889998979999999998
Q ss_pred CCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 799589998069848999858889743
Q gi|255764505|r 312 HNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 312 ~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++++++|||| +|+++|+||..||++|
T Consensus 79 ~~i~~lPVvd-~gklvGIIT~~Dil~A 104 (104)
T cd04594 79 NKTRWCPVVD-DGKFKGIVTLDSILDA 104 (104)
T ss_pred CCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 6978789998-9999999996895378
No 49
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.78 E-value=1.8e-18 Score=154.80 Aligned_cols=104 Identities=25% Similarity=0.284 Sum_probs=95.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
+.-+|.|++++.||++.|.+++++++||++ +++++||+|++|+++.. .+.+++++|+++|++++|++++.+|+++
T Consensus 2 d~vtv~p~~tv~ea~~lM~~~~i~~lpVv~-~~~lvGivT~~Dl~~~~----~~~~v~~iMt~~~itv~~~~~l~~a~~~ 76 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH----PNRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHHCCC----CCCCHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf 989968949899999999863998899999-99998999810531278----8879688502798999794919999997
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|.+++++++||+|+ |+++|+||.+||+|+
T Consensus 77 M~~~~i~~lpVvd~-g~lvGiiT~~Divre 105 (105)
T cd04599 77 MEEKKIERLPVLRE-RKLVGIITKGTIALE 105 (105)
T ss_pred HHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf 79859979999989-999999994586158
No 50
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.78 E-value=8.2e-19 Score=157.27 Aligned_cols=108 Identities=27% Similarity=0.395 Sum_probs=101.9
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
.+.+++|++++.||++.|.+++++++||+|+ |+++|++|++|++|.+..+..+.+++++|+++|.++++++++.+|+++
T Consensus 3 pV~ti~p~~tv~ea~~~m~~~~i~~lpVvd~-~~lvGivT~~Di~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~a~~~ 81 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQEL 81 (110)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCEEEEECCEEEECCCCCHHHHHHH
T ss_conf 9899799599999999999759988999989-999999976898877653767881210325366886699939999998
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|.+++++++||+|+ |+++|+||..|++|.
T Consensus 82 m~~~~~~~lpVvd~-g~lvGiit~~Dilks 110 (110)
T cd04595 82 MVEHDIGRVPVVED-GRLVGIVTRTDLLRT 110 (110)
T ss_pred HHHCCCEEEEEEEC-CEEEEEEEHHHEECC
T ss_conf 89749139999989-999999984156157
No 51
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.78 E-value=1.1e-18 Score=156.32 Aligned_cols=94 Identities=27% Similarity=0.402 Sum_probs=89.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
++++|.+++++.+|+..|.++++|+++|+|++++++||||++|+++ ..+|++++|++++.||+++
T Consensus 2 dv~tv~~~~~v~~a~~~m~~~~i~~lpVvd~~g~lvGIiT~rDli~---------------~~~~itv~~~~~v~eaa~l 66 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIA---------------KSEVVTATKRTTVSECAQK 66 (96)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHCC---------------CCCCEEECCCCCHHHHHHH
T ss_conf 9639089698999999999729987999989994999998888825---------------7788797998909999999
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99679958999806984899985888974
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
|.+++|++|||||++|+++|+||.+||+|
T Consensus 67 M~~~~I~~LPVvd~~~~lvGiit~~Dllk 95 (96)
T cd04614 67 MKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred HHHCCCCEEEEECCCCCEEEEEEHHHCCC
T ss_conf 99859988628989991999988798048
No 52
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.78 E-value=1.7e-18 Score=154.96 Aligned_cols=108 Identities=30% Similarity=0.416 Sum_probs=99.5
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC-----------CCCCCCHHHHCCCCCEEECC
Q ss_conf 3055100238888987410466200000043232324123403567617-----------82337098834889789779
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK-----------DLNTLSVEDVMIKNPKVILE 298 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~-----------~~~~~~v~~iMt~~p~~I~~ 298 (341)
+-++++++++.||+..|.+++++++||+|++++++|++|++|+.|++.. .....+++++|+++|+++++
T Consensus 3 vvtv~~~~tl~~a~~~m~~~~i~~lpVvd~~~~lvGiit~~Dil~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~ 82 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVTP 82 (122)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHCCCCCEEECC
T ss_conf 19998969999999999974997899990898688896599999999843764201210253588999966899869989
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 987899999999679958999806984899985888974
Q gi|255764505|r 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 299 d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
++++.+|+++|.+++++++||||++|+++|+||..|++|
T Consensus 83 ~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiiT~~Dilk 121 (122)
T cd04803 83 DTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHEEE
T ss_conf 998999999998568509999947998999999515564
No 53
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.77 E-value=4.5e-18 Score=151.91 Aligned_cols=109 Identities=20% Similarity=0.317 Sum_probs=98.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCHHHHH-HC--CCCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 43055100238888987410466200000043-2323241234035676-17--82337098834889789779987899
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNF-HK--DLNTLSVEDVMIKNPKVILEDTLLTV 304 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDlrR~l-~~--~~~~~~v~~iMt~~p~~I~~d~~i~e 304 (341)
++-+|.+++|+.||++.|.++++++++|++++ ++++|++|++|+.|.+ .+ +....+++++|+++++++++++++.+
T Consensus 2 dvitv~~~~tv~eA~~~M~~~~i~~v~V~~~~~~~~vGiiT~~Di~~~~~~~~~~~~~~~V~~vMt~~v~tv~~d~~~~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHCCCCEEEECCCCCHHH
T ss_conf 84999982939999999998299889999789960899998189899998467894444986827035499999494999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9999996799589998069848999858889743
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|+++|.+++++++||+| +|+++|+||.+|+++|
T Consensus 82 a~~~m~~~~i~~lpVvd-~~~lvGiit~~Dil~A 114 (114)
T cd04630 82 CARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 99999977972999999-9999999976896479
No 54
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.77 E-value=4.5e-18 Score=151.92 Aligned_cols=106 Identities=26% Similarity=0.361 Sum_probs=97.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 54305510023888898741046620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
+++.+|+|++++.||++.|.+++++++||+| +++++|++|++|+.. + ..+.+++++|++++.++++++++.+|++
T Consensus 2 kdvvtv~~d~tv~ea~~~m~~~~~~~~pVvd-~~~lvGivt~~Dll~---~-~~~~~v~~iM~~~~~tv~~~~~l~~a~~ 76 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD-NGKVVGIVSARDLLG---K-DPDETVEEIMSKDLVVAVPEMDIMDAAR 76 (107)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHCC---C-CCCCCHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 8809989929599999999975997899998-999999887645315---9-9877267860578601699986999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||||++|+++|+||..|++||
T Consensus 77 ~m~~~~~~~lpVvde~g~lvGiiT~~Dilra 107 (107)
T cd04610 77 VMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred HHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9998299689699239989999994784439
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.76 E-value=6.6e-18 Score=150.71 Aligned_cols=108 Identities=28% Similarity=0.402 Sum_probs=97.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH-HHCC-CCCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567-6178-233709883488978977998789999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN-FHKD-LNTLSVEDVMIKNPKVILEDTLLTVAM 306 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~-l~~~-~~~~~v~~iMt~~p~~I~~d~~i~eAl 306 (341)
+..+|++++++.||++.|.++++++++|+| +++++|++|++|++|. +.++ ..+.+++++|+++|+++++++++.+|+
T Consensus 2 ~~vtv~~~~tv~ea~~~m~~~~i~~v~V~~-~~~~vGiit~~Di~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD-DGRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEECHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCCCHHHHH
T ss_conf 998978919799999999972999899998-9999999995578899871679856658885126817998899199999
Q ss_pred HHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 99996799589998069848999858889743
Q gi|255764505|r 307 QLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 307 ~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++|.+++++++||+|+ ++++|+||.+|++|.
T Consensus 81 ~~m~~~~i~~lpVvd~-~~lvGiit~~Dilk~ 111 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLRL 111 (111)
T ss_pred HHHHHCCCCEEEEEEC-CEEEEEEEHHHEECC
T ss_conf 9998539958999989-999999985457363
No 56
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.76 E-value=2.8e-18 Score=153.35 Aligned_cols=109 Identities=31% Similarity=0.403 Sum_probs=101.2
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC-CCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 430551002388889874104662000000432323241234035676178-2337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD-LNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++.+|++++|+.||++.|.+++++++||+| +|+++|++|.+|+++++..+ ....++.++|+++|.++++++++.+|++
T Consensus 2 dvvtv~p~~tl~~a~~~m~~~~~~~lpVvd-~~~l~Givt~~di~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~ 80 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD-DGRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDALK 80 (111)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 849999929599999999971994899999-9999999989999987751477775699997079605299997999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||||++|+++|+||..|++||
T Consensus 81 ~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA 111 (111)
T cd04612 81 RMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 9997698199999689989999986886349
No 57
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.76 E-value=6e-18 Score=150.99 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=97.5
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
+-++|.|++++.||++.|.++++++++|+|++|+++|++|++|++|. ...+++++|++.|.++.+++++.+|+++
T Consensus 2 ~pvtv~pd~~l~eA~~lm~~~~~~~l~VVd~~g~l~Givt~~Dl~~~-----~~~~v~d~m~~~~~tv~~d~~l~~a~~~ 76 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA-----SGGCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH-----CCCCHHHCCCCCCEEECCCCCHHHHHHH
T ss_conf 98389998939999999997399879999799978999899998763-----0895345102576699799999999999
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99679958999806984899985888974
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
|.+++++++||||++|+++|+||..||++
T Consensus 77 M~~~~i~~lPVVD~~grlvGivT~~Di~~ 105 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 99729876258989990999998688425
No 58
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.76 E-value=1.2e-16 Score=141.45 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHC----CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC-CCCCCC-CC
Q ss_conf 99999999999999999---72001----13669999999982799599993381379999999998750-886110-12
Q gi|255764505|r 27 ALRSIIAEKRGLSSLES---SLQGE----LSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAST-GTPSFF-VH 97 (341)
Q Consensus 27 a~~~l~~e~~al~~l~~---~l~~~----~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~-G~~a~~-~~ 97 (341)
..|-|..+.+++.++-+ +++.. ....+....+.+.+.+ ||++.|+|+|++.|.-...-|.++ +++.+- ..
T Consensus 332 MlKEI~EQP~ai~~tL~~~gri~~~~~~i~l~~l~~~~~~l~~i~-rI~iVACGTSyhAglvaky~~E~la~i~~V~v~~ 410 (691)
T PTZ00295 332 TIKEIHEQPMTLSRSLNNGGRISDYNSRVKLGGLDPYKDELLKIE-NLILTGCGTSFYAALFAKYLMRYLSCFNTVQVMD 410 (691)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 799987549999999974166467777053167514489986188-5999985488999999999999953999768984
Q ss_pred CCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHH
Q ss_conf 33023202301210470789836878078876666632045627998447889545214533768861554324752178
Q gi|255764505|r 98 AAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTT 177 (341)
Q Consensus 98 ~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~ 177 (341)
++|... + ....+++++|+||+||||.+++.+++.||++|+++++||+..+|++++.||.++++...+| .+.|.|.
T Consensus 411 asEf~~-~-~~~~~~~lvI~ISQSGETADTLaALr~AK~~G~~tlaIvNv~gSsiaReaD~~i~t~AGpE---IgVASTK 485 (691)
T PTZ00295 411 AIEINV-S-VLPKEHAGVIFISQSGETRDVIKACKLAEDLGIPKLSVVNSVGSTIARMTGCGVYLNAGRE---VAVASTK 485 (691)
T ss_pred EHHHCC-C-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHEECCEEEEECCCCE---EEEEECH
T ss_conf 012014-5-7898775399975778856799999999976993899954788725304463268247764---6787048
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999999999999999998503-3878887531100111124333332104754305510023888898741046620000
Q gi|255764505|r 178 SAIMQLAIGDALAIALLESRN-FSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAV 256 (341)
Q Consensus 178 Stt~~l~~~Dalav~l~~~~~-~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~V 256 (341)
+.|+|++..-.||+.+.+.|+ .+.++.... -..|..+-+.|.. .+..+..+++....+.+.+. +++
T Consensus 486 aFtsQl~~L~llal~la~~~~~l~~~~~~~~------~~~L~~lP~~i~~-----~L~~~~~i~~iA~~~~~~~~--~~f 552 (691)
T PTZ00295 486 AFSSQVSVLSLIANWFAQHRKGISSGKRRSL------INSLHRLPLYLGV-----TLKCEEQCKQIAEKIKNKNS--IFV 552 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH------HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCC--EEE
T ss_conf 9999999999999999986089878999999------9999860776999-----98627899999999853455--899
Q ss_pred CCCCCEEEEEEECCCH
Q ss_conf 0043232324123403
Q gi|255764505|r 257 VDEGQKLKGIITEGDI 272 (341)
Q Consensus 257 vd~~~~liGIITdgDl 272 (341)
+.. |--..+--+|-|
T Consensus 553 LGR-G~~ypiAlEGAL 567 (691)
T PTZ00295 553 LGK-GLSYPIALEGAL 567 (691)
T ss_pred EEC-CCCHHHHHHHHH
T ss_conf 836-887599999999
No 59
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=99.76 E-value=1.6e-17 Score=147.93 Aligned_cols=272 Identities=23% Similarity=0.248 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHC---CHHHHHH--HHHHHHHCCCCEEEEECCCHHHH---HHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999999999-972001---1366999--99999827995999933813799---99999998750886110123
Q gi|255764505|r 28 LRSIIAEKRGLSSLE-SSLQGE---LSFQFHC--AVEKIKAIKGRVVITGIGKSGHI---GSKLASTLASTGTPSFFVHA 98 (341)
Q Consensus 28 ~~~l~~e~~al~~l~-~~l~~~---~~~~~~~--av~~i~~~~grv~~~GvG~S~~i---a~k~a~tl~s~G~~a~~~~~ 98 (341)
.|=|..|.+||.++- ..++.. ...+|.+ +-+.+.+.+ ||.+++||+|+|- |+++=-.|+ |+|+.---+
T Consensus 264 lKEIyEQP~a~~~tL~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~I~IvACGTSYHAGLv~kY~iE~lA--~iPv~Ve~A 340 (628)
T TIGR01135 264 LKEIYEQPRALRDTLEGRLEEEGGVDLEELGADLAEELLKNID-RIQIVACGTSYHAGLVAKYLIERLA--GIPVEVEVA 340 (628)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCCC-EEEEEECCHHHHHHHHHHHHHHHHC--CCCCEEEEE
T ss_conf 2422676899999998762157614511267521123431555-6899954016889999999999861--897289984
Q ss_pred CCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHH
Q ss_conf 3023202301210470789836878078876666632045--62799844788954521453376886155432475217
Q gi|255764505|r 99 AEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFS--IPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPT 176 (341)
Q Consensus 99 ~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~--~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt 176 (341)
+|.-.-+ ..+.+++++|+||+||||.+++++++++|++| +++++|||-+.|.|.+.||.+|++...+| .|.|.|
T Consensus 341 SEfRYr~-~~~~~~~L~I~ISQSGETADTL~ALr~aK~~G~~~~~L~IcNv~gS~l~Re~D~~L~t~AGpE---IGVAsT 416 (628)
T TIGR01135 341 SEFRYRK-PVVDKKTLVIAISQSGETADTLEALRLAKELGLYAKTLGICNVPGSTLTREADHTLYTRAGPE---IGVAST 416 (628)
T ss_pred CCEEECC-CCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCC---HHHHHH
T ss_conf 1200136-775887659999748610889999999984798515899983687533578778776506971---114545
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-HH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-EHHHHHHHHHHHHCCCCCE
Q ss_conf 899999999999999999850338-78-88753110011112433333210475430551-0023888898741046620
Q gi|255764505|r 177 TSAIMQLAIGDALAIALLESRNFS-EN-DFYVLHPGGKLGTLFVCASDVMHSGDSIPLVK-IGCPLIDAITILSEKRFGC 253 (341)
Q Consensus 177 ~Stt~~l~~~Dalav~l~~~~~~t-~~-df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~-~~~si~eal~~m~~~~~g~ 253 (341)
.++|+||++.=.|++.+.+.||.- .. +-. .+...|.++-+.+.. ... .+..+++..+.+.+++- +
T Consensus 417 KaFt~Ql~~L~~L~~~~a~~~g~~~~~~~~~------~~~~~L~~lP~~~~~-----~l~~~~~~i~~~A~~~~~~~~-f 484 (628)
T TIGR01135 417 KAFTAQLTVLYLLALALAKARGTLSDAEEEA------ELVDALRRLPELVEQ-----VLKAQDEKIAELAEKYADKRN-F 484 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH------HHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHCCC-E
T ss_conf 8899999999999999998537555878999------999998750699999-----870456689999999731687-3
Q ss_pred EEECCCCCEEEEEEECCCHH-H---HHH-C-----CCCCCCHHHHCCCCCEE-E-CCCC-CHHHHHHHHHHCCCC--EEE
Q ss_conf 00000432323241234035-6---761-7-----82337098834889789-7-7998-789999999967995--899
Q gi|255764505|r 254 VAVVDEGQKLKGIITEGDIF-R---NFH-K-----DLNTLSVEDVMIKNPKV-I-LEDT-LLTVAMQLLRQHNIS--VLM 318 (341)
Q Consensus 254 v~Vvd~~~~liGIITdgDlr-R---~l~-~-----~~~~~~v~~iMt~~p~~-I-~~d~-~i~eAl~lM~~~kI~--~Lp 318 (341)
+++ .. |---=|-=+|=|+ + +++ + .++.=|+.=+=..-|+. | +++. ...+.+.-+++-+-+ .+.
T Consensus 485 lFl-GR-g~~YPiALEGALKLKEISYIHAEgYpAGElKHGPiALid~~~PVva~ap~~~Gl~~K~~SNv~Ev~ARga~vi 562 (628)
T TIGR01135 485 LFL-GR-GLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSGLLEKTKSNVEEVKARGARVI 562 (628)
T ss_pred EEE-CC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 898-35-5777023235446656545652454455345685003318870899827889850777888998872696389
Q ss_pred EE
Q ss_conf 98
Q gi|255764505|r 319 VV 320 (341)
Q Consensus 319 VV 320 (341)
|+
T Consensus 563 ~~ 564 (628)
T TIGR01135 563 VL 564 (628)
T ss_pred EE
T ss_conf 98
No 60
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.76 E-value=5.2e-18 Score=151.42 Aligned_cols=107 Identities=29% Similarity=0.363 Sum_probs=96.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCE-EECCCCCHHHHHH
Q ss_conf 430551002388889874104662000000432323241234035676178233709883488978-9779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPK-VILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~-~I~~d~~i~eAl~ 307 (341)
++.+|.+++|+.||++.|.+++++++||+|++++++|++|++|+|.... .+.+++++|+++|. ++.+++++.+|++
T Consensus 3 dvvtv~~~~sl~~a~~~m~~~~~~~~pVvd~~~~l~Giit~~Dl~~~~~---~~~~v~~iM~~~~~~~~~~~~~~~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHHCC---CCCCCEEEEECCCEEEECCCCCHHHHHH
T ss_conf 8989799396999999999849988999948996987887767765057---6786035770575087047687999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.+++++++||||++|+++|+||++|++|.
T Consensus 80 ~m~~~~i~~lpVvd~~~~lvGiIt~~Dilk~ 110 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEKR 110 (110)
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 9986685199999889999999995984379
No 61
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.76 E-value=9.7e-18 Score=149.47 Aligned_cols=124 Identities=32% Similarity=0.315 Sum_probs=108.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 599993381379999999998750-8861101233023202301210470789836878078876666632045627998
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
||+|+|+|+|++.|...+.-|.+. |.|....+|.+..|.. ..+.++|++|+||+||+|+|++++++.+|++|+++|+|
T Consensus 1 rI~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lvI~iS~SG~t~e~i~a~~~a~~~g~~~i~i 79 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRR-PLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAI 79 (126)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCC-CCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99999961799999999999999729988998606755447-88999859999868979800788999999829948987
Q ss_pred ECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4478895452145337688615543247521789999999999999999
Q gi|255764505|r 145 TSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIAL 193 (341)
Q Consensus 145 T~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l 193 (341)
|++++|+|++.||+.++++..+| ...+.|.|.+++++....+|+.+
T Consensus 80 T~~~~S~la~~ad~~i~~~~g~E---~~~~~Tks~t~~~~~l~lla~~~ 125 (126)
T cd05008 80 TNVVGSTLAREADYVLYLRAGPE---ISVAATKAFTSQLLALLLLALAL 125 (126)
T ss_pred ECCCCCHHHHHCCEEEECCCCCE---EEEECCHHHHHHHHHHHHHHHHH
T ss_conf 06999978996898798698776---78708699999999999999986
No 62
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.76 E-value=1.2e-17 Score=148.88 Aligned_cols=107 Identities=31% Similarity=0.435 Sum_probs=97.0
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH-C--CCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 4305510023888898741046620000004323232412340356761-7--823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH-K--DLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~-~--~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
++.+++|++++.||++.|.++++++++|+| +++++|++|++|++|.+. + ...+.+++++|+++|++++|++++.+|
T Consensus 2 ~vvti~~~~tl~~a~~~m~~~~i~~l~V~d-~~~~vGivt~~Di~~~~~~~~~~~~~~~v~~iM~~~~~tv~~~~~l~~a 80 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD-NEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEA 80 (112)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCEEECCCCHHHHH
T ss_conf 978968919899999999974998799998-9999999982187888875479812389999723485599479869999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 99999679958999806984899985888974
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
+++|.+++++++||+|+ |+++|+||.+|++.
T Consensus 81 ~~~m~~~~~~~lpVvd~-~~lvGiIt~~Dil~ 111 (112)
T cd04802 81 AKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHCCCEEEEEEC-CEEEEEEECHHHCC
T ss_conf 99878719858999989-99999998067105
No 63
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.75 E-value=5.5e-18 Score=151.30 Aligned_cols=107 Identities=22% Similarity=0.352 Sum_probs=99.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617823370988348897897799878999999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQL 308 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~l 308 (341)
+.-+|.|++++.||++.|.++++++++|+|++|+++|++|.+|+++... .+.+++++|+++|.++++++++.+|+++
T Consensus 3 ~pitv~~~~tv~eal~~m~~~~~~~l~Vvd~~~~lvGivt~~di~~~~~---~~~~v~~im~~~~~tv~~~~~~~~a~~~ 79 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK---EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEHHHHHHCCC---CCCEEEECCEEEEEEECCCCCHHHHHHH
T ss_conf 8999799397999999999739978999958998999998104343005---8967875126202897489999999999
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|.+++++++||||++|+++|+||..||++.
T Consensus 80 m~~~~~~~lPVVd~~~~lvGiiT~~dll~t 109 (109)
T cd04583 80 VLKRGPKYVPVVDEDGKLVGLITRSSLVDT 109 (109)
T ss_pred HHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 985598388899649999999996882376
No 64
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.75 E-value=1.5e-17 Score=148.15 Aligned_cols=110 Identities=25% Similarity=0.445 Sum_probs=96.7
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC---CCCCHHHHC------CCCCEEECCC
Q ss_conf 4305510023888898741046620000004323232412340356761782---337098834------8897897799
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL---NTLSVEDVM------IKNPKVILED 299 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~---~~~~v~~iM------t~~p~~I~~d 299 (341)
++.+|.|++++.||+..|.+++++++||+|++|+++|++|++|+++....+. ...++.+.| ..+++++.++
T Consensus 2 ~Vitv~pd~~l~da~~lm~~~~is~lPVVD~~g~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~t~~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEECCC
T ss_conf 97898998999999999998098669998789969899759999988751554434420877642155554785698999
Q ss_pred CCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 878999999996799589998069848999858889743
Q gi|255764505|r 300 TLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 300 ~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++.+|+++|.+++++++||||++|+++|+||..|++|-
T Consensus 82 ~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilry 120 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 979999999998498579899899979999986882383
No 65
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.75 E-value=9.6e-18 Score=149.51 Aligned_cols=107 Identities=31% Similarity=0.409 Sum_probs=97.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC------------CCCCCCHHHHCCCCCEEE
Q ss_conf 43055100238888987410466200000043232324123403567617------------823370988348897897
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK------------DLNTLSVEDVMIKNPKVI 296 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~------------~~~~~~v~~iMt~~p~~I 296 (341)
++-+|++++++.||++.|.+++++++||+|+ ++++|++|++|+.|.+.. ...+.+++++|+++|+++
T Consensus 2 ~vvtv~~~~tl~ea~~~m~~~~i~~lpVvd~-~~~vGiiT~~Di~~~l~~~~~~~~~~~~~~~~~~~~V~~iM~~~~~tv 80 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITI 80 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCCCCCEEE
T ss_conf 9479799398999999999709988999989-998878759999999974465332011024513668553343798899
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 79987899999999679958999806984899985888974
Q gi|255764505|r 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 297 ~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
++++++.+|+++|.+++++++||+|+ |+++|+||.+|++|
T Consensus 81 ~~~~~l~~~~~~m~~~~~~~lpVvd~-~~lvGIIT~~Dilr 120 (121)
T cd04633 81 EPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred ECCCCHHHHHHHHHHHCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf 09898999999989719859999989-99999998346028
No 66
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.75 E-value=2.1e-17 Score=147.06 Aligned_cols=107 Identities=30% Similarity=0.427 Sum_probs=96.2
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC------------------------------
Q ss_conf 43055100238888987410466200000043232324123403567617------------------------------
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK------------------------------ 278 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~------------------------------ 278 (341)
++.+|.+++++.+|++.|.+++++++||+|+ ++++|++|+.|+.|.+..
T Consensus 2 dvvTv~~d~~l~ea~~~m~~~~i~~lPVvd~-~~lvGivT~~Dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9889589398999999999749977999979-999999986999988751675543235660233211123222266777
Q ss_pred ----CCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf ----82337098834889789779987899999999679958999806984899985888974
Q gi|255764505|r 279 ----DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 279 ----~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
+....+++++|+++++++++++++.+|.++|.+++++++||+|+ |+++|+||..|++|
T Consensus 81 ~~~~~~~~~~v~diM~~~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~-~~lvGIItr~Dilk 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHCCC
T ss_conf 665432278989958889879989896999999999739888999989-99999999577308
No 67
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.74 E-value=1.6e-17 Score=147.98 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=97.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC---------------CCCCCHHHHCCCCC
Q ss_conf 430551002388889874104662000000432323241234035676178---------------23370988348897
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD---------------LNTLSVEDVMIKNP 293 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~---------------~~~~~v~~iMt~~p 293 (341)
++-+|.+++++.||++.|.+++++++||+|++|+++|++|++|+++..... .....+..+|+++|
T Consensus 2 ~Vitv~~~~~l~eA~~lm~~~~i~~lPVvd~~g~lvGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPL 81 (126)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 57999995999999999998098789999289909999998997655514430344445555420334423420244799
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 89779987899999999679958999806984899985888974
Q gi|255764505|r 294 KVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 294 ~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
++++|++++.+++++|.+++++++||||++|+++|+||..|+++
T Consensus 82 itv~~~~~l~~~~~~m~~~~i~~lpVVD~~~~lvGIIs~~Dil~ 125 (126)
T cd04642 82 ITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 89999693999999999869749999989995999999289421
No 68
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.74 E-value=2.9e-17 Score=146.03 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=102.5
Q ss_pred CCEEEEEHHHHHHHHHH-HHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCC--CCCEEECCCCCHHHH
Q ss_conf 43055100238888987-410466200000043232324123403567617823370988348--897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITI-LSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMI--KNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~-m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt--~~p~~I~~d~~i~eA 305 (341)
++++|+++.|+.|++.. +.+++.+..||+|++|+++|++|.+|+++...+.+...++.++|+ +++.++.|++++.+|
T Consensus 2 dv~tv~~~~tl~e~~~~~~~~~~~~~~pVvd~~g~l~Givt~~dl~~~~~~~~~~~~v~~v~~~~~~~~~v~~~~~l~~a 81 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAEV 81 (114)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCEEECCCCCHHHH
T ss_conf 95584999959999999985079668999878997999999999875454025688477821027787589999979999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 999996799589998069848999858889743
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++|.++++.+|||||++|+++|+||.+|++|.
T Consensus 82 l~~m~~~~~~~LpVVd~~g~lvGiit~~Dilrr 114 (114)
T cd04801 82 LKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114 (114)
T ss_pred HHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 999997698678899479909999997884368
No 69
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.73 E-value=1.4e-16 Score=141.06 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=110.0
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCC
Q ss_conf 243333321047543055100238888987410466200000043232324123403567617--823370988348897
Q gi|255764505|r 216 LFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNP 293 (341)
Q Consensus 216 ~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p 293 (341)
+.++|+|+|.+ +.+++++++++.|+.+.|.+.+....+|+|++++++|+++-.|+++.+.+ ......+.++|+++|
T Consensus 454 ~~~~v~dvm~~--~~~~v~~~~~l~e~~~~~~~~~~~~~~Vvd~~g~l~Giv~l~dl~~~~~~~~~~~~~~~~~~~~~~~ 531 (583)
T PRK01862 454 RTTQMRELIQP--AQTVVPLTASVADMTRVFLEYPVKYLYVTDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHTPF 531 (583)
T ss_pred HHCCHHHHCCC--CCCEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCC
T ss_conf 50809996387--8823499998999999998479707999889997999978999887751635556460999817999
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEC--CCEEEEEEEHHHHHHC
Q ss_conf 89779987899999999679958999806--9848999858889743
Q gi|255764505|r 294 KVILEDTLLTVAMQLLRQHNISVLMVVDD--CQKAIGIVHFLDLLRF 338 (341)
Q Consensus 294 ~~I~~d~~i~eAl~lM~~~kI~~LpVVD~--~~~lvGiIt~~DLlka 338 (341)
.++.+|+++.+|+++|.++..+++||||+ +++++|+||..|++++
T Consensus 532 ~~l~~~~sL~~al~~f~~~~~~~LPVVd~~~~~~lvGiit~~dil~a 578 (583)
T PRK01862 532 PLLTPDMPLRDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDA 578 (583)
T ss_pred CEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHH
T ss_conf 57889998999999999669987789955999879999778999999
No 70
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.72 E-value=2.8e-17 Score=146.12 Aligned_cols=107 Identities=32% Similarity=0.410 Sum_probs=102.8
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 55100238888987410466200000043232324123403567617823370988348897897799878999999996
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQ 311 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~ 311 (341)
++++++|+++|++.|.++++++++|+|++++++|+||..|+.+.....+...+|+++|..++.++.+++++.||+++|.+
T Consensus 5 tv~~~~~L~~a~~~~~e~~~~~i~VVD~~~k~vG~it~~Dll~~~~~~~~~~~V~d~m~~~v~~i~~~~~v~dalr~~~~ 84 (111)
T cd04603 5 SVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLLRIFRE 84 (111)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHCHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 86599959999999987699768998899968899889998643844553243877515677463899768999999874
Q ss_pred CCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 799589998069848999858889743
Q gi|255764505|r 312 HNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 312 ~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+++.++||||++|+++|+|+..||+|-
T Consensus 85 ~~~~~l~VVD~~grlvGiI~~rdlLr~ 111 (111)
T cd04603 85 TEPPVVAVVDKEGKLVGTIYERELLRF 111 (111)
T ss_pred CCCCEEEEECCCCCEEEEEEHHHHHCC
T ss_conf 499889999389979999962551239
No 71
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.72 E-value=6.5e-17 Score=143.46 Aligned_cols=118 Identities=30% Similarity=0.356 Sum_probs=111.5
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEEC
Q ss_conf 33333210475430551002388889874104662000000432323241234035676178233709883488978977
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVIL 297 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~ 297 (341)
.+|+++|.+ ++-.+++++|++||...+.++++.+.||+|++ +++|++|-.|+-.++.++-.+.+|+++|.+++++|+
T Consensus 172 ~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~~~kV~~~M~k~vitI~ 248 (294)
T COG2524 172 EKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNLDAKVSDYMRKNVITIN 248 (294)
T ss_pred CHHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCCCCEECCC-CEEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCEEC
T ss_conf 026662667--84676688639999999997286678510289-458999889999999768965438887505770475
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 99878999999996799589998069848999858889743
Q gi|255764505|r 298 EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 298 ~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|+.+.||+++|.++++..|.|+|.+|+++|++|..|+|++
T Consensus 249 eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ 289 (294)
T COG2524 249 EDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTR 289 (294)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 73049999999876386469998469967878855788888
No 72
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.71 E-value=1e-16 Score=142.01 Aligned_cols=105 Identities=25% Similarity=0.294 Sum_probs=93.6
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCEEEECCC-CCEEEEEEECCCHHHHHHCCCC-----------CCCHHHHCCCCCEEECC
Q ss_conf 05510023888898741046620000004-3232324123403567617823-----------37098834889789779
Q gi|255764505|r 231 PLVKIGCPLIDAITILSEKRFGCVAVVDE-GQKLKGIITEGDIFRNFHKDLN-----------TLSVEDVMIKNPKVILE 298 (341)
Q Consensus 231 p~V~~~~si~eal~~m~~~~~g~v~Vvd~-~~~liGIITdgDlrR~l~~~~~-----------~~~v~~iMt~~p~~I~~ 298 (341)
-.|.+++++.+|+..|.+++++.+||+|+ +|+++||+|++|+.|++.++.. .....++|+++++++++
T Consensus 4 i~v~~~~sl~~a~~lm~~~~i~rlpVvd~~~g~lvGIiT~~dil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~viti~~ 83 (123)
T cd04627 4 IPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISING 83 (123)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHCCCCCCEEECC
T ss_conf 48489892999999997499777999958999499999979999999863765661445411200233237677179899
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHH
Q ss_conf 9878999999996799589998069848999858889
Q gi|255764505|r 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDL 335 (341)
Q Consensus 299 d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DL 335 (341)
++++.+|+++|.+++++++||||++|+++|+++..|+
T Consensus 84 d~~l~~A~~lM~~~~i~~lpVVD~~g~lvGiiS~~Dl 120 (123)
T cd04627 84 DQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHE
T ss_conf 9959999999998098878698599969999892542
No 73
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.70 E-value=7.9e-17 Score=142.83 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=93.4
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCC---CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCC--EEECCCCCHHH
Q ss_conf 305510023888898741046620000004---3232324123403567617823370988348897--89779987899
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDE---GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNP--KVILEDTLLTV 304 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~---~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p--~~I~~d~~i~e 304 (341)
--++.|++++.||++.|.+++++++||+|+ +++|+||+|++|++.. .....+++++|++.+ ++.+++.++.+
T Consensus 4 Pvtv~p~~tv~ea~~lm~~~~~~~~pVvd~g~~~~klvGIvT~rDi~~~---~~~~~~v~~iMt~~~~~i~~~~~~~l~e 80 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL---TDSETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHHHHHC---CCCCCCCCCEEECCCEEEEECCCCCHHH
T ss_conf 9997998999999999997198779999657768969999997895235---0767656351652766899479878999
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 999999679958999806984899985888974
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
|+++|.++++++|||||++|+++|+||..|++|
T Consensus 81 a~~~m~~~~i~~LPVVd~~g~LvGiIT~~Di~k 113 (114)
T cd04602 81 ANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHCCCCEEEEECCCCEEEEEEECHHHCC
T ss_conf 999999749667819978996999999244036
No 74
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=4.9e-15 Score=129.78 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=137.3
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 9982799599993381379999999998750-886110123302320230121047078983687807887666663204
Q gi|255764505|r 59 KIKAIKGRVVITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRF 137 (341)
Q Consensus 59 ~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~ 137 (341)
.+.+.+ ||+++++|.|.|-|.-...-|.++ ++|...--|+|...-. ..+.++|++|+||+||||.+++.+++++|++
T Consensus 279 ~~~~~~-rI~IvAcGTSYhAglv~ky~~E~la~ipv~Ve~aSEfry~~-~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~ 356 (597)
T COG0449 279 ILREVD-RIIIVACGTSYHAGLVAKYFFERLAKIPVEVEEASEFRYRE-PALNPNTLVIAISQSGETADTLAALRLAKEQ 356 (597)
T ss_pred HHCCCC-EEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 334502-69999776888999999999999848981899634345526-5788785799982676537899999999974
Q ss_pred CCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 5627998447889545214533768861554324752178999999999999999998503-387888753110011112
Q gi|255764505|r 138 SIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRN-FSENDFYVLHPGGKLGTL 216 (341)
Q Consensus 138 ~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~-~t~~df~~~HPgG~lg~~ 216 (341)
|+++++||+.+.|++++.+|+.|++...+| .+.|.|...|+|++..-.|+..+.+.+| .+.+++.... +.
T Consensus 357 G~~tlaItNv~gSti~Resd~~l~~~AGpE---igVAsTKaftaQl~~L~lLal~~a~~~g~i~~~~~~~~~------~~ 427 (597)
T COG0449 357 GAKTLAITNVPGSTIARESDHTLLIRAGPE---IGVASTKAFTAQVLALYLLALYLAKQRGTISEEEERSLI------KE 427 (597)
T ss_pred CCCEEEEEECCCCHHHCCCCEEEEECCCCC---EEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH------HH
T ss_conf 997899981589832144540777546773---324333358999999999999976761754256799999------99
Q ss_pred HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCH
Q ss_conf 43333321047543055100238888987410466200000043232324123403
Q gi|255764505|r 217 FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDl 272 (341)
|.++-+.|.. .+..+..+.+....+.+.+- .+.+. .|-..++--+|-+
T Consensus 428 L~~lp~~i~~-----~l~~~~~i~~~a~~l~~~~~--~~~lG-RG~~ypvAlEgAL 475 (597)
T COG0449 428 LQKLPNHIPK-----VLAAEEKIKELAKRLADAKD--FFFLG-RGVLYPVALEGAL 475 (597)
T ss_pred HHHHHHHHHH-----HHHCCHHHHHHHHHHCCCCC--EEEEC-CCCCCHHHHHHHH
T ss_conf 9999999999-----97157899999998605687--89986-7887376766566
No 75
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.68 E-value=8.9e-16 Score=135.20 Aligned_cols=141 Identities=19% Similarity=0.235 Sum_probs=116.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 99998503387888753110011112-43333321047543055100238888987410466200000043232324123
Q gi|255764505|r 191 IALLESRNFSENDFYVLHPGGKLGTL-FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITE 269 (341)
Q Consensus 191 v~l~~~~~~t~~df~~~HPgG~lg~~-Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITd 269 (341)
..+.++..-+.+.++.. ..-+. +.+|.++|.. .-+.|++.+++.+|.+.|.+.+.++++++++++++.||+|+
T Consensus 125 ~~~akR~~~~~~~~~eq----~~~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~ 198 (610)
T COG2905 125 RSLAKRLRDIADRLAEQ----GESEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTR 198 (610)
T ss_pred HHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEH
T ss_conf 88999999999999861----4105889987777417--87526865767999999996088728998379874332422
Q ss_pred CCHHHHH-HCC-CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 4035676-178-23370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 270 GDIFRNF-HKD-LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 270 gDlrR~l-~~~-~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.|+++.+ .++ ....+|+++||.+|+++++.+.+.||.-+|.+++|+++||++ +|+++|+||..|+++.
T Consensus 199 ~dl~~~v~~~g~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l 268 (610)
T COG2905 199 KDLRSRVIADGRSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRL 268 (610)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEEC-CCEEEEEEEHHHHHHH
T ss_conf 777899986589742335454146844544765699999999980774423611-8904677669999976
No 76
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.68 E-value=4.7e-16 Score=137.24 Aligned_cols=109 Identities=23% Similarity=0.320 Sum_probs=97.3
Q ss_pred CCEEEEEHHHHHHHHHHHHCC-CCCEEEECCCCCEEEEEEECCCHHHHHHCC-----CCCCCHHHHCCCCCEEECCCCCH
Q ss_conf 430551002388889874104-662000000432323241234035676178-----23370988348897897799878
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEK-RFGCVAVVDEGQKLKGIITEGDIFRNFHKD-----LNTLSVEDVMIKNPKVILEDTLL 302 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~-~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-----~~~~~v~~iMt~~p~~I~~d~~i 302 (341)
.+|+|.|++++.||++.|.++ .+++++|+| +++++|+||+.|+.+.+... +.+.|++++|+++|.++++++++
T Consensus 2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd-~~r~vGiisr~dl~~~~~~~~g~~l~~~~pV~~~M~~~p~~v~~~~~i 80 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD-DGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPL 80 (119)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEEHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCEEECCCCCH
T ss_conf 9857499984999999998789967689987-998899998999999870743223303895899716898799898969
Q ss_pred HHHHHHHHHCCCCEEE---EEECCCEEEEEEEHHHHHHC
Q ss_conf 9999999967995899---98069848999858889743
Q gi|255764505|r 303 TVAMQLLRQHNISVLM---VVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 303 ~eAl~lM~~~kI~~Lp---VVD~~~~lvGiIt~~DLlka 338 (341)
.+|.++|.++..+++| ||+++|+++|++|.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr~ 119 (119)
T cd04598 81 EEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLRQ 119 (119)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHCC
T ss_conf 999999985693325788589579989999898994079
No 77
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.67 E-value=6.7e-16 Score=136.11 Aligned_cols=114 Identities=24% Similarity=0.232 Sum_probs=95.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 59999338137999999999875-08861101233023202301210470789836878078876666632045627998
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLAS-TGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s-~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
+|+|+|+|.|.+.|.-...-|.+ .++|.....|+|..|.+-..+.++|++|++|+||+|+|++++++.+|++|+++|+|
T Consensus 1 nI~~vG~GtSy~a~~~a~~~~e~~~~i~v~~~~asef~~~~~~~~~~~~lvi~iS~SG~T~e~i~a~~~ak~~g~~tiai 80 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999961999999999999986678179998510124369876799969999837989789999999999869959999
Q ss_pred ECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 4478895452145337688615543247521789999999
Q gi|255764505|r 145 TSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLA 184 (341)
Q Consensus 145 T~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~ 184 (341)
|++++|+|++.||++|.++.+. ..+-|.+.+++|.
T Consensus 81 T~~~~S~la~~aD~~i~~g~e~-----~~~~tk~~~~~~~ 115 (120)
T cd05710 81 TDDEDSPLAKLADYVIVYGFEI-----DAVEEKYLLLYML 115 (120)
T ss_pred ECCCCCHHHHHCCEEEECCCCC-----CCHHHHHHHHHHH
T ss_conf 8989898799679888889963-----2020899999999
No 78
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.66 E-value=4.2e-16 Score=137.57 Aligned_cols=106 Identities=26% Similarity=0.340 Sum_probs=95.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC--CCCCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf 43055100238888987410466200000043232324123403567617--8233709883488978977998789999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK--DLNTLSVEDVMIKNPKVILEDTLLTVAM 306 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~--~~~~~~v~~iMt~~p~~I~~d~~i~eAl 306 (341)
++.+|.|++++.+|++.|.+++++++||+|+ ++++|++|++|+++++.. ...+.+++++|+++|.++++++++.++.
T Consensus 2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~-~~lvGiit~~Di~~~~~~~~~~~~~~v~~iM~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCCCCHHHHH
T ss_conf 8069999497999999999819988999989-999999999999999863876468769845675945978989499999
Q ss_pred HHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 9999679958999806984899985888974
Q gi|255764505|r 307 QLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 307 ~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
++|.+++. .||||++|+++|+||..||+|
T Consensus 81 ~~~~~~~~--~~vV~~~g~lvGIvT~~Dil~ 109 (110)
T cd04609 81 ELLDRGNV--AVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHCCC--CEEEECCCEEEEEEEHHHHHC
T ss_conf 98876798--249961999999998368529
No 79
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=4.6e-15 Score=129.98 Aligned_cols=148 Identities=24% Similarity=0.174 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHH
Q ss_conf 6999999998279-95999933813799999999987-508861101233023202301210470789836878078876
Q gi|255764505|r 52 QFHCAVEKIKAIK-GRVVITGIGKSGHIGSKLASTLA-STGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKA 129 (341)
Q Consensus 52 ~~~~av~~i~~~~-grv~~~GvG~S~~ia~k~a~tl~-s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~ 129 (341)
...+..+.+.+.. -||+|+|+|+|.+++.-+..-+. .+|.+.+.+.++|.+|-..-...++-++|++|+||+|+|++.
T Consensus 26 ~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~~~~~~~lvi~~S~SG~TpE~va 105 (340)
T COG2222 26 VLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTPESVA 105 (340)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 89999999972797489998158628899999999998617603530536876168534689818999837899879999
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 6666320456279984478895452145337688615543247521789999999999999999985033878887
Q gi|255764505|r 130 ILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFY 205 (341)
Q Consensus 130 ~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~ 205 (341)
+++.+|+.|+.+|+||+.++|||++.||+.|.++..+|. +.+-|.|.+++|+-.-++ +.+..++...+..
T Consensus 106 a~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e~---~~a~T~s~~~~~~a~l~~---~a~~~~~~~~~~~ 175 (340)
T COG2222 106 AAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEEA---SVAATKSFTASLLALLAL---LAEYDGDAQLLAA 175 (340)
T ss_pred HHHHHCCCCCEEEEEECCCCCHHHHCCCEEEECCCCCHH---HHHHHHHHHHHHHHHHHH---HHHHCCCCHHHHH
T ss_conf 999852179769999637898456449733542777068---899999999999999888---7644131045566
No 80
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=99.65 E-value=7.7e-16 Score=135.63 Aligned_cols=156 Identities=24% Similarity=0.272 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 1789999999999999999985-------033878887531100111124333332104754305510023888898741
Q gi|255764505|r 175 PTTSAIMQLAIGDALAIALLES-------RNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILS 247 (341)
Q Consensus 175 Pt~Stt~~l~~~Dalav~l~~~-------~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~ 247 (341)
|--|.-+=-+-.+.+|+++.+. |+++.|.=+.- =|+-.+-+..++..++.-++.|+.++.+++..|.
T Consensus 36 P~~SspMDTVTE~~MAiAMA~~GGiGVIH~N~~~E~Qae~------V~~VKr~e~g~i~redp~t~~P~~tv~~~~~l~~ 109 (476)
T TIGR01302 36 PILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIERQAEE------VKRVKRAENGIISREDPVTISPETTVEDVLELME 109 (476)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH------HHHHHHHCCCEEEECCCEEECCCCHHHHHHHHCC
T ss_conf 0685898824599999999854994799447998999999------8875232066065148868479851899997322
Q ss_pred CCCCCEEEECCC--CC-----EEEEEEEC---CCHHHHHHCCCCCCC--HHHHCC--CCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 046620000004--32-----32324123---403567617823370--988348--89789779987899999999679
Q gi|255764505|r 248 EKRFGCVAVVDE--GQ-----KLKGIITE---GDIFRNFHKDLNTLS--VEDVMI--KNPKVILEDTLLTVAMQLLRQHN 313 (341)
Q Consensus 248 ~~~~g~v~Vvd~--~~-----~liGIITd---gDlrR~l~~~~~~~~--v~~iMt--~~p~~I~~d~~i~eAl~lM~~~k 313 (341)
+++++.+||+++ .+ ||+||||. +|++=. .-.+.+ |+++|| .+.+|++++-.+.+|.++|+++|
T Consensus 110 ~~gisG~PVv~~G~~~g~ktGKLvGIiT~sqWrD~~f~---~~~~~~daV~~~MT~~~~~iT~~e~i~~e~A~~~L~~~r 186 (476)
T TIGR01302 110 RKGISGIPVVEDGKDGGPKTGKLVGIITKSQWRDVRFV---KDKGKKDAVSEVMTPREELITVPEGIDLEEALKVLHKHR 186 (476)
T ss_pred CCCCCEEEEEECCCCCCCCEEEEEEEEECCCEEECCCC---CCCCCCCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf 15765457883688989710069999837722541101---046883301011203764348416777899999988608
Q ss_pred CCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf 95899980698489998588897436
Q gi|255764505|r 314 ISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 314 I~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
+..|||||++++++|+||+.|+.|..
T Consensus 187 ~ekLpvVd~~~~lVgLiT~~Di~~~~ 212 (476)
T TIGR01302 187 IEKLPVVDKDGELVGLITVKDIVKRR 212 (476)
T ss_pred CCEEEEECCCCCEEEEEEHHHHHHHH
T ss_conf 65047882789889998644788986
No 81
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.65 E-value=9.9e-16 Score=134.87 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=92.6
Q ss_pred EEEHHHHHHHHHHHHCCC-----CCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 510023888898741046-----620000004323232412340356761782337098834889789779987899999
Q gi|255764505|r 233 VKIGCPLIDAITILSEKR-----FGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 233 V~~~~si~eal~~m~~~~-----~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++++.|+.||+..|.+++ ..+++|+|++++++|++|.+|+.+. -.+.+++++|+++|.++.+++++.+|++
T Consensus 2 ~~~~~TV~eai~~lr~~~~~~~~~~~i~Vvd~~~~l~G~vt~~dll~~----~~~~~v~~iM~~~~~~v~~~~~~~~a~~ 77 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----DPDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEHHHHHHC----CCCCCHHHHHCCCEEECCCCCCHHHHHH
T ss_conf 699889999999998518885617799999799979999986772241----8887166630021363379998999999
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|.++++.++||||++|+++|+||..|++..
T Consensus 78 ~m~~~~~~~lPVVd~~~~lvGiIt~~Di~~~ 108 (109)
T cd04606 78 LFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHCCCEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 9998527604689889979999996896844
No 82
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=3.1e-15 Score=131.24 Aligned_cols=107 Identities=21% Similarity=0.329 Sum_probs=92.5
Q ss_pred EEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH-----HHHH-C--CCCCCCHHHHCCCCCEEEC------
Q ss_conf 551002388889874104662000000432323241234035-----6761-7--8233709883488978977------
Q gi|255764505|r 232 LVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF-----RNFH-K--DLNTLSVEDVMIKNPKVIL------ 297 (341)
Q Consensus 232 ~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr-----R~l~-~--~~~~~~v~~iMt~~p~~I~------ 297 (341)
+|.+++|+.||++.|.++++++++|+|++++++||||+.|++ |.+. . ...+.+|+++|++.+....
T Consensus 5 tv~~dtti~eA~~~M~~~~v~~l~VvD~~~~lvGIiT~~Dl~~~~~~~~~~~~~~~~~~l~V~dvMt~~~~~~a~~~~~~ 84 (126)
T cd04640 5 VIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLEEL 84 (126)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHCCHHHCCCCCCCEEEECCCCC
T ss_conf 96899959999999998397679898799979999976300121568888644898255053133554520463022000
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCC-EEEEEEEHHHHHHC
Q ss_conf 998789999999967995899980698-48999858889743
Q gi|255764505|r 298 EDTLLTVAMQLLRQHNISVLMVVDDCQ-KAIGIVHFLDLLRF 338 (341)
Q Consensus 298 ~d~~i~eAl~lM~~~kI~~LpVVD~~~-~lvGiIt~~DLlka 338 (341)
+++++.+++..|.+++++++||||+++ +++|++|..||.|.
T Consensus 85 ~~a~v~d~~~~m~~~~~~hllVvd~~~~~l~GiiS~~DI~R~ 126 (126)
T cd04640 85 ENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIARQ 126 (126)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 348599999999983980874998999889899987994269
No 83
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=99.63 E-value=9.6e-16 Score=134.94 Aligned_cols=143 Identities=23% Similarity=0.270 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HHHHHH--HHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 999999999850338788875311001111---243333--321047543055100238888987410466200000043
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGT---LFVCAS--DVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG 260 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~---~Ll~V~--DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~ 260 (341)
...+|+++.+.=|+ +..|-.=++-. ...+|+ +.|.. +-.++.|+.++.|++..|.+++++.+||+|++
T Consensus 57 E~~MAIamA~~GGi-----GvIH~Nmsie~Qa~~V~kVK~~~~~i~--~Pvti~pd~tv~d~~~l~~~~~~sg~pVv~~~ 129 (479)
T PRK07807 57 GRRMAETVARRGGL-----VVLPQDLPIDAVAETVAWVKSRDLVFD--TPVTLAPDDTVSDALALIHKRAHGAVVVVDEE 129 (479)
T ss_pred CHHHHHHHHHCCCE-----EEECCCCCHHHHHHHHHHHHCCCCEEC--CCEEECCCCCHHHHHHHHHHHCCCCCCEECCC
T ss_conf 49999999977985-----998799999999999999711377436--99897898719999999998378887414679
Q ss_pred CEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf 2323241234035676178233709883488978977998789999999967995899980698489998588897436
Q gi|255764505|r 261 QKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 261 ~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
++|+||+|.+|+| .. + ...+++++|+++++++++..+..+|.++|.++++..|||||++++++|+||..|+.|..
T Consensus 130 gkLvGIvT~RDir-~~--d-~~~~v~~vMT~~lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~~~L~gLiT~kDi~k~~ 204 (479)
T PRK07807 130 GRPVGLVTEADCR-GV--D-RFTRVGDVMSTDLVTLPAGTDPRKAFDLLEAAPVKVAPVVDADGRLAGVLTRTGALRAT 204 (479)
T ss_pred CCEEEEEECHHHC-CC--C-CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCEEECCCCEEEEEEEEEHHHHCC
T ss_conf 9478898213411-47--7-77758886257736613667879999999753523113775699299999961164544
No 84
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=99.62 E-value=2.8e-15 Score=131.59 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHH---HHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 99999999985033878887531100111124---33333---2104754305510023888898741046620000004
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTLF---VCASD---VMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDE 259 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L---l~V~D---iM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~ 259 (341)
...+|+++.++=|+ +..|-.=++-.+- .+|+. -|+.. .+ ++.|++++.|++..|.+++++.+||+|+
T Consensus 64 E~~MAIamA~~GGi-----GVIH~Nmsie~Qa~~V~~VKr~esg~I~d-Pv-ti~p~~Tv~da~~l~~k~~~sg~PVvd~ 136 (497)
T PRK07107 64 DDNMAIALAREGGL-----SFIFGSQSIESEAAMVRRVKNHKAGFVIS-DS-NLTPDNTLADVLDLKERTGHSTIAVTED 136 (497)
T ss_pred CHHHHHHHHHCCCE-----EEECCCCCHHHHHHHHHHHHCCCCCCCCC-CC-CCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 09999999977997-----99879999999999999995635676689-81-7589864999999888719962345103
Q ss_pred ---CCEEEEEEECCCHHHHHHCCCCCCCHHHHCC--CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHH
Q ss_conf ---3232324123403567617823370988348--89789779987899999999679958999806984899985888
Q gi|255764505|r 260 ---GQKLKGIITEGDIFRNFHKDLNTLSVEDVMI--KNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLD 334 (341)
Q Consensus 260 ---~~~liGIITdgDlrR~l~~~~~~~~v~~iMt--~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~D 334 (341)
+++|+||||.+|+| +.++-.+.+++++|| ++++++++..+..||.++|.++++..|||||++++++|++|..|
T Consensus 137 g~~~gkLvGIvT~RD~r--f~~~~~~~~V~~vMT~~~~Lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~g~L~gLiT~kD 214 (497)
T PRK07107 137 GTANGKLLGIVTSRDYR--VSRMSLDTKVKDFMTPFEKLVVAKVGITLKEANNIIWDHKLNTLPIIDKNQHLVYMVFRKD 214 (497)
T ss_pred CCCCCEEEEEEECCEEE--CCCCCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEEEHHH
T ss_conf 78598799998464011--1136777766564067654278468899999999998634443027837995899998378
Q ss_pred HHHC
Q ss_conf 9743
Q gi|255764505|r 335 LLRF 338 (341)
Q Consensus 335 Llka 338 (341)
+.+.
T Consensus 215 i~k~ 218 (497)
T PRK07107 215 YDSH 218 (497)
T ss_pred HHHH
T ss_conf 8886
No 85
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.61 E-value=3.5e-14 Score=123.59 Aligned_cols=135 Identities=24% Similarity=0.311 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHH------CCCCCCCCCCC----CHHHHCCC---------
Q ss_conf 36699999999827---9959999338137999999999875------08861101233----02320230---------
Q gi|255764505|r 50 SFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLAS------TGTPSFFVHAA----EASHGDLG--------- 107 (341)
Q Consensus 50 ~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~s------~G~~a~~~~~~----ea~Hgdlg--------- 107 (341)
.+.+++++++|.++ .|||+++|.|+|+..|+.+++.|.. -+.|++-+..- .|.=.|.|
T Consensus 16 ~~~i~~~~~~i~~~~~~g~kI~~~GNGgSa~~A~H~a~dl~~~~~~~r~~l~aisL~~~~~~~ta~~ND~~~~~if~~ql 95 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQV 95 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999999999999987998999968740888999999873576668887017976787788888756532999999999
Q ss_pred --EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf --121047078983687807887666663204562799844788954521453376886155432475217899999999
Q gi|255764505|r 108 --MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 108 --~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~ 185 (341)
..+++|++|+||.||+++++++++++||++|+++|++|+..+++|.+.+|+.+.+|... |-.-.-+++.+
T Consensus 96 ~~~~~~gDili~iS~sG~s~nii~a~~~ak~~g~~~i~ltg~~gg~l~~~~D~~i~vps~~--------~~~vee~Hl~i 167 (177)
T cd05006 96 EALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSDD--------TPRIQEVHLLI 167 (177)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECCCC--------CHHHHHHHHHH
T ss_conf 9744689889998189999899999999998799899998789861676199899969998--------58999999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|255764505|r 186 GDALAIA 192 (341)
Q Consensus 186 ~Dalav~ 192 (341)
+.+|+-.
T Consensus 168 ~H~l~~~ 174 (177)
T cd05006 168 GHILCEL 174 (177)
T ss_pred HHHHHHH
T ss_conf 9999998
No 86
>PRK13937 phosphoheptose isomerase; Provisional
Probab=99.60 E-value=2.4e-13 Score=117.53 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHH------H
Q ss_conf 3245799999999999999999999972001136699999999827---995999933813799999999987------5
Q gi|255764505|r 18 LMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLA------S 88 (341)
Q Consensus 18 ~~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~------s 88 (341)
||++.+.+...+.++...++++.+.+ .+++++++|.++ .|||+++|.|.|+..|+.++..|. +
T Consensus 1 mm~~~I~~~f~es~~~~~~~~e~~~~--------~I~~~a~~i~~~~~~g~kI~~~GNGGSaa~A~Hfa~dl~~~~~~~r 72 (192)
T PRK13937 1 MMQDLITKHFQASIAAMEAALESLLA--------AIAKIAEALIEALASGGKLLLCGNGGSAADAQHIAAELVGRYKKER 72 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 92799999999999999999998499--------9999999999999879989999686318889999999964135578
Q ss_pred CCCCCCCCCCC----CHHHHCCC-----------EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHH
Q ss_conf 08861101233----02320230-----------1210470789836878078876666632045627998447889545
Q gi|255764505|r 89 TGTPSFFVHAA----EASHGDLG-----------MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVA 153 (341)
Q Consensus 89 ~G~~a~~~~~~----ea~Hgdlg-----------~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la 153 (341)
-+.|++.+..- .|.-.|.| ..+++|++|+||.||+++.+++++++||++|.++|++|+.....+.
T Consensus 73 ~~lpaisL~~d~~~lTA~~ND~g~~~if~~ql~~~~~~gDili~iS~SGnS~Nii~A~~~A~~~g~~~i~ltG~~gg~l~ 152 (192)
T PRK13937 73 PALPAIALTTDTSALTAIGNDYGYERVFARQVEALGRPGDVLIGISTSGNSPNVLAALEKARELGMTTIGLTGRDGGKMK 152 (192)
T ss_pred CCCCEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 98535776788287776427787899999999955788988999779999979999999999879979999888960578
Q ss_pred HCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 21453376886155432475217899999999999999
Q gi|255764505|r 154 CHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAI 191 (341)
Q Consensus 154 ~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav 191 (341)
+.+|+.+.+|.... -.---+++.++.+|+=
T Consensus 153 ~~~D~~i~vps~~~--------~~iee~H~~i~H~lc~ 182 (192)
T PRK13937 153 ELCDLLLIVPSDDT--------PRIQEIHITIGHILCD 182 (192)
T ss_pred HHCCEEEEECCCCC--------HHHHHHHHHHHHHHHH
T ss_conf 83998999589985--------8999999999999999
No 87
>PRK13936 phosphoheptose isomerase; Provisional
Probab=99.58 E-value=2.9e-13 Score=116.90 Aligned_cols=166 Identities=19% Similarity=0.272 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHH------HC
Q ss_conf 245799999999999999999999972001136699999999827---995999933813799999999987------50
Q gi|255764505|r 19 MKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLA------ST 89 (341)
Q Consensus 19 ~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~------s~ 89 (341)
|++.+.+...+.++...++++.+.+ .++++++++.++ .|||+++|.|.|+..|+.+++.|. +-
T Consensus 3 m~~~I~~~f~esi~~~~~~~~~~~~--------~i~~aa~~i~~~~~~g~ki~~~GNGgSaa~A~h~a~el~~~~~~~r~ 74 (197)
T PRK13936 3 LQSRIRQHFEDSIDTKQQAMEVLAP--------PIAQAVELMVQALLNEGKILACGNGGSAADAQHFSSELLNRFERERP 74 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCHHHCCCC
T ss_conf 6999999999999999999997099--------99999999999998799899996878999999999998665412788
Q ss_pred CCCCCCCCCCC----HHHHCCC-----------EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
Q ss_conf 88611012330----2320230-----------12104707898368780788766666320456279984478895452
Q gi|255764505|r 90 GTPSFFVHAAE----ASHGDLG-----------MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC 154 (341)
Q Consensus 90 G~~a~~~~~~e----a~Hgdlg-----------~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~ 154 (341)
+.|++.+..-- |.-.|.| .-+++|++|+||.||+++.+++++++||++|.++|++|+.....+..
T Consensus 75 ~lpai~L~~d~~~lTai~ND~g~~~vf~rQl~a~~~~gDili~iS~SGnS~Nii~A~~~A~~~g~~~i~ltG~dgg~l~~ 154 (197)
T PRK13936 75 SLPAIALTTDSSTLTAIANDYSYNEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred CCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
T ss_conf 87557643674011010278789999999999838999989999699999899999999998599599998168535675
Q ss_pred C---CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1---4533768861554324752178999999999999999998503387
Q gi|255764505|r 155 H---ADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSE 201 (341)
Q Consensus 155 ~---ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~ 201 (341)
+ +|+.|.+|... +..-.-+++.++.+|+ .+.+.+=|-.
T Consensus 155 l~~~~Di~i~vps~~--------~~~iqe~Hl~i~H~Lc-~lie~~lfg~ 195 (197)
T PRK13936 155 LLLPEDVEIRVPHDR--------TARIQEVHLLAIHCLC-DLIDSQLLGS 195 (197)
T ss_pred HCCCCCEEEECCCCC--------HHHHHHHHHHHHHHHH-HHHHHHHCCC
T ss_conf 256689899819997--------0799999999999999-9999984599
No 88
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=99.58 E-value=2.1e-13 Score=117.95 Aligned_cols=135 Identities=22% Similarity=0.263 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHH------HCCCCCCCCCCCCHH-----HHCCC-------
Q ss_conf 136699999999827---995999933813799999999987------508861101233023-----20230-------
Q gi|255764505|r 49 LSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLA------STGTPSFFVHAAEAS-----HGDLG------- 107 (341)
Q Consensus 49 ~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~------s~G~~a~~~~~~ea~-----Hgdlg------- 107 (341)
+.+.++++++++.+| .|||+++|.|+|+..|+.+++.|. +.+.|++-+. +.. -.|.|
T Consensus 26 ~~~~I~~aa~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~dl~~~~~~~r~~l~ai~Ls--d~s~lTa~~ND~g~e~iF~~ 103 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAIS--DVSHLSCVSNDFGYDYVFSR 103 (192)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEECC--CHHHHHHHCCCCCHHHHHHH
T ss_conf 4999999999999999879979999685889999999998746314466654325327--67775010076648899999
Q ss_pred ----EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf ----1210470789836878078876666632045627998447889545214533768861554324752178999999
Q gi|255764505|r 108 ----MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQL 183 (341)
Q Consensus 108 ----~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l 183 (341)
..+++|++|+||.||+++.+++++++||++|.++|++|+.....+++.+|+.|.+|.... +| .---+++
T Consensus 104 Ql~~~~~~gDvLi~iS~SGnS~Nii~A~~~Ak~~g~~~i~ltG~~GG~l~~l~D~~i~Vps~~~------~~-riqE~Hl 176 (192)
T PRK00414 104 YVEAVGREGDVLLGISTSGNSGNIIKAIEAAREKGMKVITLTGKDGGKMAGLADIEIRVPHFGY------AD-RIQEIHI 176 (192)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEECCCCC------CH-HHHHHHH
T ss_conf 9998178999999976899999999999999988998999977996147760897999189997------37-9999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764505|r 184 AIGDALAIA 192 (341)
Q Consensus 184 ~~~Dalav~ 192 (341)
.++.+|+=.
T Consensus 177 ~i~H~i~el 185 (192)
T PRK00414 177 KVIHILIQL 185 (192)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 89
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.57 E-value=2.1e-13 Score=117.86 Aligned_cols=178 Identities=21% Similarity=0.268 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH-CCCCCCC---C--
Q ss_conf 999999999999999999999720011366999999998279959999338137999999999875-0886110---1--
Q gi|255764505|r 23 TVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAS-TGTPSFF---V-- 96 (341)
Q Consensus 23 ~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s-~G~~a~~---~-- 96 (341)
..+..+-..+.+.++..++.+.+... ....+.+++.+.+ .||+++.|.|.||.++---+..+.- .|+|.-. +
T Consensus 19 ~~eil~~i~~ed~~v~~Av~~~lp~I-~~~v~~~~~~l~~-gGRL~YvGAGTSGRlgvlDa~E~~PTFg~~~~~v~~liA 96 (273)
T PRK05441 19 TLELLRLINEEDKKVALAVEKALPQI-AAAVDAIAAALRS-GGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIA 96 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEE
T ss_conf 99999999998899999999987899-9999999999975-982999747615889998898648766899899144676
Q ss_pred -------CCCC-------HHHHCCC--EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEE
Q ss_conf -------2330-------2320230--12104707898368780788766666320456279984478895452145337
Q gi|255764505|r 97 -------HAAE-------ASHGDLG--MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVL 160 (341)
Q Consensus 97 -------~~~e-------a~Hgdlg--~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l 160 (341)
++.| +...||- -++++|+||+||-||+|+.++..++++|+.|+++++|++|++|++++.+|+.|
T Consensus 97 GG~~Al~~~~EgaED~~~~g~~dl~~~~~~~~DvvIgIaASG~TPyv~~al~~A~~~ga~ti~I~~n~~s~l~~~ad~~I 176 (273)
T PRK05441 97 GGEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYAREIGALTIAISCNPGSPISKEADIAI 176 (273)
T ss_pred CCHHHHHHCHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEE
T ss_conf 88999863611024688899999998289965789999368897189999999998699579985389620001068137
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 6886155432475217899999999999999999850338788
Q gi|255764505|r 161 TLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 161 ~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
...+.+|.- -|-.-+.+-|+|=.+.+.+...+|-+.|..-+.
T Consensus 177 ~~~tGpEvi-tGSTRmKAGTAqK~iLNmiST~~mi~lGkVy~n 218 (273)
T PRK05441 177 EVVVGPEVL-TGSTRMKAGTAQKLVLNMISTGVMIKLGKVYGN 218 (273)
T ss_pred EECCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 517884300-266654522599999999989999980861277
No 90
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.57 E-value=6.4e-15 Score=128.96 Aligned_cols=79 Identities=38% Similarity=0.604 Sum_probs=75.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCC-CEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99993381379999999998750-88611012330232023-01210470789836878078876666632045627998
Q gi|255764505|r 67 VVITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDL-GMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 67 v~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdl-g~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
++++|+|+||++|++++.+|.+. |.|++++++++..|+++ ..++++|++|+||+||+|+|+++.++.||++|+++|+|
T Consensus 1 I~i~GiG~Sg~iA~~~~~~l~r~~g~~~~~~~d~~~~~~~~~~~~~~~D~vi~iS~SG~t~e~~~~~~~ak~~g~~vi~I 80 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99997175699999999998751494179989528777646513789998999979979889999999999879989998
Q ss_pred E
Q ss_conf 4
Q gi|255764505|r 145 T 145 (341)
Q Consensus 145 T 145 (341)
|
T Consensus 81 T 81 (87)
T cd04795 81 T 81 (87)
T ss_pred E
T ss_conf 3
No 91
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.56 E-value=4e-13 Score=115.87 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHH------CCCCCCCCCCC----CHHHHCCC----------
Q ss_conf 6699999999827---9959999338137999999999875------08861101233----02320230----------
Q gi|255764505|r 51 FQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLAS------TGTPSFFVHAA----EASHGDLG---------- 107 (341)
Q Consensus 51 ~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~s------~G~~a~~~~~~----ea~Hgdlg---------- 107 (341)
+.++++.+.+.+| .|||+++|.|.|+-.|+.+++.|.. -+.|+.-|..- -|.-.|.|
T Consensus 29 ~~i~~~~~~i~~~~~~g~kI~~cGNGGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~vF~rQl~ 108 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALE 108 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999879989999686889999999999863335789984745447880788887624789999999999
Q ss_pred -EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf -1210470789836878078876666632045627998447889545214533768861554324752178999999999
Q gi|255764505|r 108 -MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIG 186 (341)
Q Consensus 108 -~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~ 186 (341)
.-+++|++|+||.||+++.+++++++||++|.++|++|+.....+++++|+.|.+|.... -.---+++.++
T Consensus 109 al~~~gDvLi~iStSGnS~NIi~A~~~Ak~~g~~~i~ltG~~gg~l~~l~D~~i~vps~~~--------~~IqE~Hl~i~ 180 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRDT--------GRIQESHIVFI 180 (196)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCEEEEECCCCC--------HHHHHHHHHHH
T ss_conf 7168999899977999999999999999987998999988996317754898999389984--------79999999999
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999850338
Q gi|255764505|r 187 DALAIALLESRNFS 200 (341)
Q Consensus 187 Dalav~l~~~~~~t 200 (341)
.+|+ .+.+..=|.
T Consensus 181 H~lc-eliE~~LFg 193 (196)
T PRK13938 181 HAIS-EHVEHALFA 193 (196)
T ss_pred HHHH-HHHHHHHCC
T ss_conf 9999-999999749
No 92
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=119.67 Aligned_cols=192 Identities=24% Similarity=0.262 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 888655765533-245-799999999999999999999972001136699999999827995999933813799999999
Q gi|255764505|r 7 HFKSVTRKGHSL-MKN-STVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLAS 84 (341)
Q Consensus 7 ~~~~~~~~~~~~-~~~-~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~ 84 (341)
|+.|+.|+..++ .+. +..+..+-..+.+.++..+..+.+.. .....+.+++.+.+ .||+++.|.|.||.++---++
T Consensus 1 ~L~TE~~n~~s~~lD~~s~~e~l~~~~~ed~~v~~Av~~~l~~-I~~av~~~~~~l~~-gGRL~YvGAGTSGRlgvlDa~ 78 (296)
T PRK12570 1 HLVSEGRNPDTMDIDLLSSLDIVTLINQEDKKVPLAVEKVLPQ-IAQAVDKIVAAFKQ-GGRLIYMGAGTSGRLGVLDAS 78 (296)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHH
T ss_conf 9865788967688221999999999999889999999999999-99999999999965-983999778705899999998
Q ss_pred HHHHC-CCCCCCC----C--------CCC-------HHHHCCC--EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 98750-8861101----2--------330-------2320230--12104707898368780788766666320456279
Q gi|255764505|r 85 TLAST-GTPSFFV----H--------AAE-------ASHGDLG--MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLI 142 (341)
Q Consensus 85 tl~s~-G~~a~~~----~--------~~e-------a~Hgdlg--~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI 142 (341)
.+.-| |+|.-.+ . +.| +..-|+- -++++|+||+||-||+|+.++..++++|+.|+.+|
T Consensus 79 E~~PTfg~~~~~v~~liAGG~~Al~~~vEgaED~~~~g~~dl~~~~~~~~DvVIgiaASG~TPyv~~al~~A~~~Ga~ti 158 (296)
T PRK12570 79 ECPPTFSVSPEMVIGLIAGGPDAMLTAIEGAEDDPELGAQDLKAIGLTSDDVVVGIAASGRTPYVIGALEYAKQIGATTV 158 (296)
T ss_pred HCCCCCCCCHHHEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 72786589989967676388999864030266669999999998089954479998468885149999999998599679
Q ss_pred EEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 98447889545214533768861554324752178999999999999999998503387
Q gi|255764505|r 143 AITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSE 201 (341)
Q Consensus 143 ~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~ 201 (341)
+|+||++|++.+.+|+.|...+.+|.- -|-..+.+-|+|=.+.+.+....|-+.|-.-
T Consensus 159 ~i~~n~~s~l~~~ad~~I~~~tGpEvi-~GSTRmKAGTAqK~vLNmiST~~mi~lGkVy 216 (296)
T PRK12570 159 ALSCNPDSPIAQLADIAISPVVGPEVL-TGSTRLKSGTAQKMVLNMLSTASMIRLGKSY 216 (296)
T ss_pred EEECCCCHHHHHHCCEEEECCCCCHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 862488324566267525407880676-3675421056999999998899999818201
No 93
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.56 E-value=4.8e-13 Score=115.28 Aligned_cols=176 Identities=27% Similarity=0.317 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC-CCCCC----CCC--
Q ss_conf 99999999999999999997200113669999999982799599993381379999999998750-88611----012--
Q gi|255764505|r 25 QCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAST-GTPSF----FVH-- 97 (341)
Q Consensus 25 ~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~-G~~a~----~~~-- 97 (341)
+..+-..+.+.++..+..+.++. .....+.+++.+.+ .||+++.|.|.||.+|---+..+.-| |+|.- ++.
T Consensus 12 e~l~~~~~ed~~v~~av~~~lp~-I~~~i~~~~~~l~~-gGRl~Y~GAGTSGrlgvlDa~E~~PTFg~~~~~v~gliAGG 89 (257)
T cd05007 12 EILRLLNEEDKKVAAAVEAALPQ-IARAVDAAAERLRA-GGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGG 89 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHEEEEECC
T ss_conf 99999999889999999998999-99999999999965-98289987860588999889973987799989911024388
Q ss_pred ------CCC-------HHHHCCC--EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEE
Q ss_conf ------330-------2320230--1210470789836878078876666632045627998447889545214533768
Q gi|255764505|r 98 ------AAE-------ASHGDLG--MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTL 162 (341)
Q Consensus 98 ------~~e-------a~Hgdlg--~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~ 162 (341)
+.| +..-|+- .++++|+||+||.||+|+.++..++++|+.|+++|+|++|++|++.+.+|+.|..
T Consensus 90 ~~al~~~~E~aED~~~~g~~dl~~~~~~~~DvVIgIsaSG~TPyv~~aL~~A~~~ga~ti~I~~n~~s~~~~~ad~~I~~ 169 (257)
T cd05007 90 EPALTRAVEGAEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIAL 169 (257)
T ss_pred HHHHHHCHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEE
T ss_conf 99996453112566899999999808996458999946999859999999999869957876438863100027846872
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 86155432475217899999999999999999850338788
Q gi|255764505|r 163 PKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 163 ~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
++.+|.- .|-.-+.+-|+|=.+.+.+....|-+.|-.-+.
T Consensus 170 ~tGpEvi-~GSTRmkaGTaqK~iLNmiST~~mi~lGkV~~n 209 (257)
T cd05007 170 ITGPEVV-AGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGN 209 (257)
T ss_pred CCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6885002-235420225789999999889999980861277
No 94
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=99.55 E-value=2e-14 Score=125.41 Aligned_cols=145 Identities=28% Similarity=0.326 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHH---HHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 999999999985033878887531100111124---3333---3210475430551002388889874104662000000
Q gi|255764505|r 185 IGDALAIALLESRNFSENDFYVLHPGGKLGTLF---VCAS---DVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD 258 (341)
Q Consensus 185 ~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L---l~V~---DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd 258 (341)
-...+|+++.++=|+ +..|-.-++-.+. .+|+ .-|.. +--++.|+.++.|+...|.+++++.+||++
T Consensus 53 Te~~MAiamA~~GGl-----GVIHrn~sie~Q~~~V~~VKr~e~g~i~--~P~tl~P~~tv~d~~~l~~~~~~sg~PVv~ 125 (486)
T PRK05567 53 TEARLAIAMAQEGGI-----GVIHKNMSIEEQAEEVRKVKRSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVD 125 (486)
T ss_pred CCHHHHHHHHHCCCE-----EEECCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 789999999988987-----9998999999999999999753067137--986768988899999999972878614876
Q ss_pred CCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCC-CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 4323232412340356761782337098834889-789779987899999999679958999806984899985888974
Q gi|255764505|r 259 EGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKN-PKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 259 ~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~-p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
++++|+||+|.+|+| .....+.+++++|+++ .+++.++.+..+|.++|.++++..|||||++++++|++|..|+.+
T Consensus 126 ~~~kL~GiiT~rD~~---f~~~~~~~V~~vMT~~~lvt~~~~is~~eA~~~l~~~kieklPvVd~~g~L~Glit~kDi~k 202 (486)
T PRK05567 126 EEGKLVGIITNRDVR---FETDLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLLVVDDNGRLKGLITVKDIEK 202 (486)
T ss_pred CCCCEEEEEECCCEE---CCCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHHH
T ss_conf 799478886142011---00267765467534573289258899999999999731303427746896888877667776
Q ss_pred CC
Q ss_conf 36
Q gi|255764505|r 338 FG 339 (341)
Q Consensus 338 ag 339 (341)
..
T Consensus 203 ~~ 204 (486)
T PRK05567 203 AE 204 (486)
T ss_pred HH
T ss_conf 52
No 95
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=99.55 E-value=1.2e-13 Score=119.64 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=87.7
Q ss_pred HHHHHHHHHHH--CCCCEEEEECCCHHHHH---HHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHH
Q ss_conf 69999999982--79959999338137999---99999987508861101233023202301210470789836878078
Q gi|255764505|r 52 QFHCAVEKIKA--IKGRVVITGIGKSGHIG---SKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDE 126 (341)
Q Consensus 52 ~~~~av~~i~~--~~grv~~~GvG~S~~ia---~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e 126 (341)
.....++.+.+ .+ ||+|+|+|.|.+.| +++--.+ .++|.....++|...-.--.+.++.++|+||+||||.|
T Consensus 38 ~i~~~~~e~~~k~i~-rI~ivaCGTSyhA~l~~ky~~E~~--~~ipv~v~~AsEF~~~~p~~~~~~tlvI~ISQSGETaD 114 (347)
T PRK11382 38 LVHAIVEEMVKRDID-RIYFVACGSPLNAAQTAKHLADRF--SDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDYGKTEE 114 (347)
T ss_pred HHHHHHHHHHHCCCC-EEEEEECHHHHHHHHHHHHHHHHH--HCCCEEEEEHHHHCCCCCCCCCCCEEEEEEECCCCHHH
T ss_conf 788999998737998-799997508899999999999998--69984895053420058988899869999936847299
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEEC
Q ss_conf 8766666320456279984478895452145337688615
Q gi|255764505|r 127 LKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEP 166 (341)
Q Consensus 127 ~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~ 166 (341)
++.+++.+|+.|+++++||+.++|+|++.||..+.+...+
T Consensus 115 tl~Al~~ak~~Ga~tiaitN~~~S~i~r~ad~~i~~~a~~ 154 (347)
T PRK11382 115 VIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADC 154 (347)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHCCCHHHHHCCCH
T ss_conf 9999999998699679986799888887476247544667
No 96
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.54 E-value=5.2e-14 Score=122.34 Aligned_cols=110 Identities=32% Similarity=0.448 Sum_probs=100.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC--CCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf 4305510023888898741046620000004323232412340356761782--33709883488978977998789999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL--NTLSVEDVMIKNPKVILEDTLLTVAM 306 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~--~~~~v~~iMt~~p~~I~~d~~i~eAl 306 (341)
++..+.+++++.+|+..|.+++.++++|+|++++++|++|.+|+++.+.... ...++.++|.++|.++.+++++.+++
T Consensus 2 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAA 81 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEECCHHHHHH
T ss_conf 97796892989999999998398099999399959999988998988763157410330456750546897321177999
Q ss_pred HHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 99996799589998069848999858889743
Q gi|255764505|r 307 QLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 307 ~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
..|.++++.++||+|++++++|+++.+|++++
T Consensus 82 ~~~~~~~~~~~~Vvd~~~~~iG~vs~~di~~~ 113 (113)
T cd02205 82 ELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113 (113)
T ss_pred HHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 99998497299999669979999988997469
No 97
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.53 E-value=1.1e-12 Score=112.56 Aligned_cols=164 Identities=16% Similarity=0.237 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHH------CC
Q ss_conf 45799999999999999999999972001136699999999827---9959999338137999999999875------08
Q gi|255764505|r 20 KNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLAS------TG 90 (341)
Q Consensus 20 ~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~s------~G 90 (341)
.+.+.+...+.++...++.+.+.+ .+.+|+++|.+| .|||++||-|.|+..|+.+++.|.. -+
T Consensus 2 ~~~I~~~f~~si~~~~~~~e~l~~--------~I~~aa~~i~~~l~~g~ki~~cGNGGSaa~A~Hfa~el~~~f~~~R~~ 73 (196)
T PRK10886 2 LERIKACFTESIQTQIAAAEALPD--------AISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPS 73 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 589999999999999999987199--------999999999999987997999868474889999999996465568988
Q ss_pred CCCCCCCCC----CHHHHCCC-----------EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC
Q ss_conf 861101233----02320230-----------121047078983687807887666663204562799844788954521
Q gi|255764505|r 91 TPSFFVHAA----EASHGDLG-----------MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACH 155 (341)
Q Consensus 91 ~~a~~~~~~----ea~Hgdlg-----------~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ 155 (341)
.|++-|..- .|.-.|.| .-+++|++|+||.||+++.++++++.||++|.++|++|+.....+..+
T Consensus 74 lpai~L~~d~s~lTai~ND~~~~~vF~rQl~alg~~gDiLi~iStSGnS~Nii~Ai~~A~~~g~~~i~ltG~~gg~l~~l 153 (196)
T PRK10886 74 LPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGL 153 (196)
T ss_pred CEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
T ss_conf 40566326705654311667799999999998567999899994899998999999999988998999976886236651
Q ss_pred ---CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---453376886155432475217899999999999999999850338
Q gi|255764505|r 156 ---ADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFS 200 (341)
Q Consensus 156 ---ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t 200 (341)
+|+.|.+|....+ .---+++.++.+|+ .+.+.+=|.
T Consensus 154 ~~~~Di~I~vps~~t~--------rIqE~Hl~i~H~lc-elIe~~lF~ 192 (196)
T PRK10886 154 LGPQDVEIRIPSHRSA--------RIQEMHMLTVNCLC-DLIDNTLFP 192 (196)
T ss_pred CCCCCEEEECCCCCCH--------HHHHHHHHHHHHHH-HHHHHHHCC
T ss_conf 5767989986999811--------89999999999999-999998668
No 98
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.53 E-value=7.7e-14 Score=121.10 Aligned_cols=189 Identities=21% Similarity=0.231 Sum_probs=131.4
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 21047078983687807887666663204562799844788954521453376886155432475217899999999999
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDA 188 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Da 188 (341)
++-+||++.=++|--.++-+++-- .|.+ .+.|.+|... +|+-+-| ...
T Consensus 17 lTfDDVlLvP~~s~v~p~~Vdl~t------------------~lt~--~i~L~iPivS-------s~MDTVT-----e~~ 64 (499)
T PTZ00314 17 LTYDDFIILPGYIDFSADDVDLSG------------------QLTK--NIRLHIPIVS-------SPMDTVT-----EHK 64 (499)
T ss_pred CCCCCEEECCCCCCCCHHHEEEEE------------------ECCC--CCEECCCEEE-------CCCCCCC-----CHH
T ss_conf 181656886788877850417410------------------3248--9120787796-------7887656-----899
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHH---HHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC--
Q ss_conf 99999985033878887531100111124---3333---321047543055100238888987410466200000043--
Q gi|255764505|r 189 LAIALLESRNFSENDFYVLHPGGKLGTLF---VCAS---DVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-- 260 (341)
Q Consensus 189 lav~l~~~~~~t~~df~~~HPgG~lg~~L---l~V~---DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-- 260 (341)
+|+++.++=|+ +..|-.=++-.+. .+|+ .-|+. +--++.|+.++.|++..|.+++++.+||++++
T Consensus 65 MAiamA~~GGi-----GVIHrn~sie~Q~~~V~~VKr~e~g~i~--dPit~~p~~ti~d~~~l~~~~~~sg~pVv~~g~~ 137 (499)
T PTZ00314 65 MAIAMALMGGI-----GVIHNNCTVERQVEEVKKVKRFENGFIM--DPKSLSPEHTVSDVIEIKDKKGFSGIPITEDGRP 137 (499)
T ss_pred HHHHHHHCCCE-----EEECCCCCHHHHHHHHHHHHHHCCCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 99999977986-----9987999999999999998763066206--9827389862999997567518863679863886
Q ss_pred -CEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf -2323241234035676178233709883488978977998789999999967995899980698489998588897436
Q gi|255764505|r 261 -QKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 261 -~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
++|+||+|.+|+| .. ...+.+++++|++++++.+++.+..+|.++|.++++..+||||++++++|++|..|+.+..
T Consensus 138 ~gkL~GIvT~rD~~-f~--~d~~~~v~~vMt~~lvt~~~~isl~eA~~ll~~~kieklpvVd~~g~L~glit~kDi~k~~ 214 (499)
T PTZ00314 138 GGKLLGIVTSKDID-FV--KDKSTPVSEIMTTDLVVGRYPITLEDANDVLNRSRKGVLPIVNDNGELVALVSRSDAVKNR 214 (499)
T ss_pred CCEEEEEEECCCEE-CC--CCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHHH
T ss_conf 88689998362023-23--0677588886156726725999999999999860331230665789589986303487753
No 99
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.52 E-value=9.3e-14 Score=120.50 Aligned_cols=109 Identities=20% Similarity=0.363 Sum_probs=99.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 43055100238888987410466200000043-23232412340356761782337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++-++++++++.++++.|.+++++.+||++++ ++++|+++.+|+.+....+.....+.++| ++|.++++++++.++++
T Consensus 2 ~v~~i~~~~s~~e~~~~~~~~~~sr~PV~~~~~~~ivGil~~kDll~~~~~~~~~~~~~~~~-~~~~~v~~~~~l~~~l~ 80 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDLL-RPPLFVPESTPLDDLLE 80 (111)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCCHHHHC-CCCEECCHHHHHHHHHH
T ss_conf 68999699999999999997799779999547887789999114456665278764077640-44222255665889998
Q ss_pred HHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9996799589998069848999858889743
Q gi|255764505|r 308 LLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.|++++.+.++|+|+.|+++|+||+.|++++
T Consensus 81 ~~~~~~~~~a~VvDe~G~~~GivT~~DilE~ 111 (111)
T cd04590 81 EMRKERSHMAIVVDEYGGTAGLVTLEDILEE 111 (111)
T ss_pred HHHHCCCEEEEEECCCCCEEEEEEHHHHHCC
T ss_conf 4355496799999699999999980485377
No 100
>TIGR00274 TIGR00274 glucokinase regulator homolog; InterPro: IPR005488 The glucokinase regulatory protein (GCKR) is a vertebrate protein that inhibits glucokinase by forming an inactive complex with the enzyme. It is a protein of about 70 Kd which seems to be evolutionary related to a number of uncharacterised bacterial proteins which are about half the size of GCKR..
Probab=99.52 E-value=3e-13 Score=116.80 Aligned_cols=166 Identities=26% Similarity=0.362 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHH-CCCC---------
Q ss_conf 9999999999999-999972001136699999999827---9959999338137999999999875-0886---------
Q gi|255764505|r 27 ALRSIIAEKRGLS-SLESSLQGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLAS-TGTP--------- 92 (341)
Q Consensus 27 a~~~l~~e~~al~-~l~~~l~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~s-~G~~--------- 92 (341)
..+.|..|.+..- +..+.+ +++..|||.|.++ -||+|++|.|.||-.+-=-|....- +|++
T Consensus 21 ~~~l~N~eD~~v~~Av~~~l-----pdi~~Avd~i~~~~~~GGRLiY~GAGTSGRLGvLDAvECPPTy~v~~~lV~Gi~A 95 (291)
T TIGR00274 21 IVRLINEEDKLVPLAVEEVL-----PDIAAAVDVIVEAFQKGGRLIYIGAGTSGRLGVLDAVECPPTYGVSPELVVGIIA 95 (291)
T ss_pred HHHHHCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHH
T ss_conf 99985102443799998742-----8899999999999867980898768753310223564684898988210142030
Q ss_pred ---CCCCCCCCHH-------HHCCC--EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEE
Q ss_conf ---1101233023-------20230--12104707898368780788766666320456279984478895452145337
Q gi|255764505|r 93 ---SFFVHAAEAS-------HGDLG--MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVL 160 (341)
Q Consensus 93 ---a~~~~~~ea~-------Hgdlg--~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l 160 (341)
.-|+||+|-. -.||- .++++||||+|.-||+|+.+...++|||+.|+++|+|+|||+|..++.||+.|
T Consensus 96 GG~~A~~~a~EG~ED~~~~G~~dL~~i~lt~~DvvvgIaASGrTPYv~gaL~yAr~~Ga~Ti~iacnp~S~~s~~Ad~~I 175 (291)
T TIGR00274 96 GGEEAILHAVEGAEDSEEAGANDLKNIRLTKNDVVVGIAASGRTPYVIGALEYARKLGAKTIAIACNPESAVSKQADVAI 175 (291)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 01688611336744235888999873225634768888178975789999999997078257774177422312144300
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 68861554324752178999999999999999998503
Q gi|255764505|r 161 TLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRN 198 (341)
Q Consensus 161 ~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~ 198 (341)
.+=+.+|.- -|=.=..+-|+|=++...|..++|-+-|
T Consensus 176 ~~~vGPEi~-tGStRlKAgTa~KmvLNmLSTa~Mvk~G 212 (291)
T TIGR00274 176 EVIVGPEIL-TGSTRLKAGTAQKMVLNMLSTAVMVKLG 212 (291)
T ss_pred EEEECCEEE-CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 232044300-0001347999999999998898888741
No 101
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=119.35 Aligned_cols=189 Identities=24% Similarity=0.314 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH
Q ss_conf 67888655765533245-799999999999999-9999999720011366999999998279959999338137999999
Q gi|255764505|r 5 FSHFKSVTRKGHSLMKN-STVQCALRSIIAEKR-GLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKL 82 (341)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~e~~-al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~ 82 (341)
++|+.|+.|+..++--| .....+.+.+..|.. .-.+..+.+. +.....+.+++.+.+ .||+++.|.|.||..+---
T Consensus 1 ~~~l~TE~rn~~t~~lD~l~t~e~l~~~n~ed~~v~~AV~~alp-~Ia~Av~~~~~~l~~-GGRLiY~GAGTSGRLGvlD 78 (298)
T COG2103 1 LSHLTTEQRNPATMNLDQLSTLEMLRLINDEDQKVPLAVEAALP-QIAAAVDIIAAALKQ-GGRLIYIGAGTSGRLGVLD 78 (298)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHCCC
T ss_conf 97553112484424631159899999986664688999999768-899999999999972-9849997477654201032
Q ss_pred HHHHHHC-CCCCC------------CCCCCCHHH-------HCCC--EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998750-88611------------012330232-------0230--121047078983687807887666663204562
Q gi|255764505|r 83 ASTLAST-GTPSF------------FVHAAEASH-------GDLG--MITRDDLIIVLSWSGSSDELKAILYYARRFSIP 140 (341)
Q Consensus 83 a~tl~s~-G~~a~------------~~~~~ea~H-------gdlg--~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~ 140 (341)
|..+.-| |+|.- ++++.|-.. .|+- -++++||||.|+-||+|+.++..++++|+.|+.
T Consensus 79 AsEcPPTfgv~~e~ViglIAGG~~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~ 158 (298)
T COG2103 79 ASECPPTFGVPPELVIGLIAGGEEAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGAT 158 (298)
T ss_pred HHHCCCCCCCCHHHEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf 51178976888668565643878999976337544487899999974999677799985079983035889998864974
Q ss_pred EEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984478895452145337688615543247521789999999999999999985
Q gi|255764505|r 141 LIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLES 196 (341)
Q Consensus 141 iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~ 196 (341)
+|+|.||++|++++.+|+.|..-+.+|.- -+-.-+.|-|+|=.+.+.|....|-.
T Consensus 159 Ti~iacNp~s~i~~~Ad~~I~~~vGPEvl-tGSTRlKaGTAQKlvLNMlST~~Mi~ 213 (298)
T COG2103 159 TIGIACNPGSAISRIADIAIEPVVGPEVL-TGSTRLKAGTAQKLVLNMLSTGVMIK 213 (298)
T ss_pred EEEEECCCCCHHHHHCCCCEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89960489963455368332525584010-36643345329999999998999997
No 102
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.52 E-value=1.4e-13 Score=119.16 Aligned_cols=190 Identities=21% Similarity=0.287 Sum_probs=144.0
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC--CCHHHHCCCCEEEEEEECC-CCCCCCCHHHHHHHHHHH
Q ss_conf 2104707898368780788766666320456279984478--8954521453376886155-432475217899999999
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSEN--KSVVACHADIVLTLPKEPE-SCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~--~S~la~~ad~~l~~~~~~E-a~~~~~aPt~Stt~~l~~ 185 (341)
+.|+.++|. |+..++-.++ +++..+ +.+|+.- +-..-++||- +.+|+-.- -|. +|..-.+
T Consensus 112 ~~~g~LlIV----GnR~~iq~lA--L~~~~A--VLvTGGF~~s~evi~lAne-~~lPvlstsYDT--------FTVAtmI 174 (432)
T COG4109 112 LDPGGLLIV----GNREDIQLLA--LENGNA--VLVTGGFDVSDEVIKLANE-KGLPVLSTSYDT--------FTVATMI 174 (432)
T ss_pred CCCCCEEEE----ECHHHHHHHH--HHCCCE--EEEECCCCCCHHHHHHHCC-CCCCEEEECCCC--------EEHHHHH
T ss_conf 078956999----4689999999--864985--9995798865889976401-488448704521--------3099999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEE
Q ss_conf 99999999985033878887531100111124333332104754305510023888898741046620000004323232
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKG 265 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liG 265 (341)
-.||+=.+ |-+-+++|.|+|+|.++..+..+++++.+-...-.+.+.+..||+|+..+++|
T Consensus 175 N~Al~n~l-------------------IKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvG 235 (432)
T COG4109 175 NKALSNQL-------------------IKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVG 235 (432)
T ss_pred HHHHHHHH-------------------HHHHEEEHHHHCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCEECCCCEEEE
T ss_conf 89987766-------------------64432558774464434323246450999999999719873413314426999
Q ss_pred EEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 4123403567617823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 266 IITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 266 IITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++|-+|+. ....+.++..+|+++|+++.+.+++..+.+.|--..+.-+||||++++++|+||.+|++++
T Consensus 236 vVt~rDv~----~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~ 304 (432)
T COG4109 236 VVTMRDVL----DKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKS 304 (432)
T ss_pred EEEEHHHH----CCCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 99834644----4799861777742697554252268899888876455265688378618989889999999
No 103
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=99.49 E-value=6.1e-13 Score=114.52 Aligned_cols=143 Identities=24% Similarity=0.334 Sum_probs=109.7
Q ss_pred HHHHH-HHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHH------HHCCCCCCCCCCCCHHH-----HC
Q ss_conf 99972-001136699999999827---99599993381379999999998------75088611012330232-----02
Q gi|255764505|r 41 LESSL-QGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTL------ASTGTPSFFVHAAEASH-----GD 105 (341)
Q Consensus 41 l~~~l-~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl------~s~G~~a~~~~~~ea~H-----gd 105 (341)
+.+.+ |....+.+.+||.+|.+. .|||+.||-|+|+--|+.+|+.| .+-|.||.-|. +|.+| -|
T Consensus 12 l~~~~~De~~~~Ai~~aa~ll~~~l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR~glPAIAL~-tD~S~Ltai~ND 90 (186)
T TIGR00441 12 LEKSLKDEALIEAIQRAALLLVQSLKNGGKILICGNGGSAADAQHFAAELVGRFKLERPGLPAIALN-TDISILTAIAND 90 (186)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHCCCH
T ss_conf 9998730450889999999999999808908985685043358889998716400026776467776-223532320011
Q ss_pred CCE----------E-ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCC---CCEEEEEEECCCCCC
Q ss_conf 301----------2-10470789836878078876666632045627998447889545214---533768861554324
Q gi|255764505|r 106 LGM----------I-TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHA---DIVLTLPKEPESCPH 171 (341)
Q Consensus 106 lg~----------i-~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~a---d~~l~~~~~~Ea~~~ 171 (341)
.|. + .+|||+++||.||++++++.+++.||.+|.+||++|++-.-.|+..+ |+.|.+|..+.++..
T Consensus 91 ygyd~vF~RqVEAlG~~GDVL~GiSTSGNS~NvlkA~~~Ak~~gm~~i~L~G~dGGk~~~l~GPqD~~l~VP~~~~t~RI 170 (186)
T TIGR00441 91 YGYDEVFSRQVEALGQEGDVLLGISTSGNSKNVLKAIEAAKDKGMKTIALTGKDGGKLAGLAGPQDVELRVPSKRDTARI 170 (186)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf 02567877776632889868887424767088999999884579669997217863113357888605676788758403
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 75217899999999999999
Q gi|255764505|r 172 GLAPTTSAIMQLAIGDALAI 191 (341)
Q Consensus 172 ~~aPt~Stt~~l~~~Dalav 191 (341)
-- ++|.+.++|+-
T Consensus 171 ------QE-~H~~~~H~lc~ 183 (186)
T TIGR00441 171 ------QE-IHLLVIHILCE 183 (186)
T ss_pred ------HH-HHHHHHHHHHH
T ss_conf ------23-48899989864
No 104
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.8e-13 Score=118.49 Aligned_cols=143 Identities=24% Similarity=0.315 Sum_probs=118.0
Q ss_pred HHHCCCCHHHHHHHHHH---HHHHHH-H-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEE
Q ss_conf 98503387888753110---011112-4-333332104754305510023888898741046620000004323232412
Q gi|255764505|r 194 LESRNFSENDFYVLHPG---GKLGTL-F-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIIT 268 (341)
Q Consensus 194 ~~~~~~t~~df~~~HPg---G~lg~~-L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIIT 268 (341)
-+.-+++++|.-..--- -++-|+ . ++..|||.. ++..+.+++++.+|.+.|.++++..++|+|++.+++||+|
T Consensus 216 ~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt 293 (382)
T COG3448 216 GETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVT 293 (382)
T ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCC--CCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 85015788999999999999999998564308886374--5350177677579999999768650453266661003244
Q ss_pred CCCHHHHHH----C---CCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 340356761----7---823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 269 EGDIFRNFH----K---DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 269 dgDlrR~l~----~---~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
..|+.+... + ......++.+|++...++.+|+++.+.+..+.+...+++||+|++|+++|||++.|++-+
T Consensus 294 ~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaa 370 (382)
T COG3448 294 QRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAA 370 (382)
T ss_pred HHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 88776016856677753159986344345763353589708888887613773136688688838888627889999
No 105
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.47 E-value=6.5e-13 Score=114.33 Aligned_cols=100 Identities=26% Similarity=0.360 Sum_probs=91.1
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCC---CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHH
Q ss_conf 4305510023888898741046620000004---3232324123403567617823370988348897897799878999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDE---GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVA 305 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~---~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eA 305 (341)
.+..+.++.++.++...|.+++.+..||+++ +++++|+++..|+.+.+ +.+|++.|+++++++++.+|
T Consensus 3 ~vv~~~~~~tv~~~~~ll~~~~~~g~PVv~~~~~~~~lvG~i~~~dl~~~l---------~~~m~~~p~tv~~~~~l~~~ 73 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL---------KNYIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEHHHHHHHH---------HHHCCCCCEEECCCCCHHHH
T ss_conf 689938998999999999977997585883688788899999999999999---------97587998398999959999
Q ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 999996799589998069848999858889743
Q gi|255764505|r 306 MQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 306 l~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.++|.+.+++++||+| +|+++|+||..|++||
T Consensus 74 ~~lf~~~g~r~l~Vv~-~g~lvGiITr~Dl~~a 105 (105)
T cd04591 74 HQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHHHHHHCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 9999994995889957-9999999998995349
No 106
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=4e-13 Score=115.90 Aligned_cols=160 Identities=27% Similarity=0.394 Sum_probs=129.0
Q ss_pred CCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88954521453376886155432475217899999999999999999850338788875311001111243333321047
Q gi|255764505|r 148 NKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSG 227 (341)
Q Consensus 148 ~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~ 227 (341)
..+.||+.+++.-.+=.--|++..+ |+-||.-. +.++| .+..+ .-++++++|+.
T Consensus 20 tQ~dLA~~aGVSQ~~IArlE~G~vd--PrlSt~k~--Il~aL----~e~e~-----------------~~ita~~iM~s- 73 (187)
T COG3620 20 TQKDLARRAGVSQPYIARLEAGKVD--PRLSTVKR--ILEAL----EEAEK-----------------TRITAKTIMHS- 73 (187)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCCCC--CCHHHHHH--HHHHH----HHHHC-----------------CEEEHHHHCCC-
T ss_conf 7899998708648889998638879--30899999--99999----98546-----------------66757665358-
Q ss_pred CCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC---CCCCCCHHHHCCCCCEEECCCCCHHH
Q ss_conf 543055100238888987410466200000043232324123403567617---82337098834889789779987899
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK---DLNTLSVEDVMIKNPKVILEDTLLTV 304 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~---~~~~~~v~~iMt~~p~~I~~d~~i~e 304 (341)
.+..|.|++++.+++..|.+++++.+||+++ ++++|-||+.|+.|++.+ ++.+..+.++|...+.+++++.++..
T Consensus 74 -pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~v 151 (187)
T COG3620 74 -PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNV 151 (187)
T ss_pred -CEEEECCHHHHHHHHHHHHHCCCCCCCEEEC-CEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf -7058772466999999999759752754108-86453314989999973042212112189885588876799998799
Q ss_pred HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9999996799589998069848999858889743
Q gi|255764505|r 305 AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 305 Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
..+++..++ .+.|+ ++|+++|+||.+|+++.
T Consensus 152 I~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~ 182 (187)
T COG3620 152 ISQLLEEHP--AVLVV-ENGKVVGIITKADIMKL 182 (187)
T ss_pred HHHHHHHCC--EEEEE-ECCCEEEEEEHHHHHHH
T ss_conf 999984198--38998-68936888759999998
No 107
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.46 E-value=1.5e-13 Score=119.06 Aligned_cols=95 Identities=31% Similarity=0.342 Sum_probs=79.6
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC-------------CCCCCHHHHCC-----
Q ss_conf 430551002388889874104662000000432323241234035676178-------------23370988348-----
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD-------------LNTLSVEDVMI----- 290 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-------------~~~~~v~~iMt----- 290 (341)
+...|.|++|+.||+..|.+++.++++|+|+++.|+||+|+|||+|.+... ....+++.+.+
T Consensus 2 ~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~~L~GIvt~gDi~R~~~~~~~~~~~~~~~~~~~~~~~vs~v~t~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 45998999859999999998188657998389978999787999999876235645632000124443233456420362
Q ss_pred ----CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf ----897897799878999999996799589998069
Q gi|255764505|r 291 ----KNPKVILEDTLLTVAMQLLRQHNISVLMVVDDC 323 (341)
Q Consensus 291 ----~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~ 323 (341)
+.|+++.||+++.+|.++|++++|.+||||+++
T Consensus 82 ~~~~~~~~tv~pd~~l~~a~~lM~~~~i~~LPVV~~~ 118 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECC
T ss_conf 5511003897899999999999998698858767077
No 108
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.1e-12 Score=109.39 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHH------HCCCCCCCCCCCCHHH-----HCCCE---------
Q ss_conf 699999999827---995999933813799999999987------5088611012330232-----02301---------
Q gi|255764505|r 52 QFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLA------STGTPSFFVHAAEASH-----GDLGM--------- 108 (341)
Q Consensus 52 ~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~------s~G~~a~~~~~~ea~H-----gdlg~--------- 108 (341)
...++.+++.+| .+||+.||.|.|+.-|+.+++.|. +-+.|+.-++ +|.+| .|.|.
T Consensus 26 ~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaaEl~gRf~~eR~~lpaIaLt-~dsS~lTai~NDy~yd~vFsRqve 104 (176)
T COG0279 26 AIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALS-TDSSVLTAIANDYGYDEVFSRQVE 104 (176)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999999769979997698524518999999860787527898736864-263777656504558899999999
Q ss_pred --EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCC
Q ss_conf --2104707898368780788766666320456279984478895452145337688615543
Q gi|255764505|r 109 --ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESC 169 (341)
Q Consensus 109 --i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~ 169 (341)
=+++|++|+||.||+++.+++.++.||++|.++|++|++..-.++..||+.|.+|...++.
T Consensus 105 A~g~~GDvLigISTSGNS~nVi~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~t~R 167 (176)
T COG0279 105 ALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTDTAR 167 (176)
T ss_pred HCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHH
T ss_conf 527888789998179997789999999987698799995588750001131578658886205
No 109
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.44 E-value=6.1e-13 Score=114.54 Aligned_cols=109 Identities=27% Similarity=0.324 Sum_probs=93.2
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC--CCCCCHHHHCCCCCEEECCCCCHHHHH
Q ss_conf 430551002388889874104662000000432323241234035676178--233709883488978977998789999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD--LNTLSVEDVMIKNPKVILEDTLLTVAM 306 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~--~~~~~v~~iMt~~p~~I~~d~~i~eAl 306 (341)
...+|.|++++.+|++.|.+++++.+||+|++|+++|++|++|+.+.+.++ ..+.+++++|.+....+..++++..+-
T Consensus 3 ~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g~~~G~vt~~~ll~~~~~~~~~~~~~V~~vm~~~~~~v~~~~~l~~ls 82 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99798998909999999998499856898799968888879999999973899999828997446565147998556731
Q ss_pred H---------HHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 9---------999679958999806984899985888974
Q gi|255764505|r 307 Q---------LLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 307 ~---------lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
+ .+.+++...+++++++++++|+||..||++
T Consensus 83 ~~l~~~~~~lvv~~~~~~~~~v~~~~~k~vGIvTr~DLL~ 122 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS 122 (124)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHH
T ss_conf 0367327899999860256762777998999986799770
No 110
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.43 E-value=9.8e-13 Score=113.03 Aligned_cols=140 Identities=16% Similarity=0.291 Sum_probs=114.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCH
Q ss_conf 9850338788875311001111243333321047543055100238888987410466200000043-232324123403
Q gi|255764505|r 194 LESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDI 272 (341)
Q Consensus 194 ~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDl 272 (341)
....|...++-...+ +.+--.=++|+|+|.|..++-.++.++++.++++.+.+.+++.+||.+++ ++++|++.-+|+
T Consensus 169 ~~~~g~~~eE~~~i~--~vl~l~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~~~~~D~iiGiv~~kDl 246 (408)
T TIGR03520 169 TDEEDTTKEEQKILQ--GIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDL 246 (408)
T ss_pred HHCCCCCHHHHHHHH--HHHCCCCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEHHHH
T ss_conf 403487789999999--982759989034235457958840644389999999857987222665898761799779899
Q ss_pred HHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 567617823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 273 FRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 273 rR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.+.+.+ .+.++.++| ++|.+++++.++.++++.|++++.+-..|||+.|...|+||+.|++++
T Consensus 247 l~~~~~--~~~~~~~~~-r~~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEe 309 (408)
T TIGR03520 247 LPHLNK--KNFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEE 309 (408)
T ss_pred HHHHHC--CCCCHHHHH-HHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 878736--999889986-321489997788999999986387489999899987899888998999
No 111
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.40 E-value=4.5e-12 Score=108.22 Aligned_cols=113 Identities=40% Similarity=0.552 Sum_probs=100.4
Q ss_pred HHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCC-CHHHHCCCCCEEECCC
Q ss_conf 332104754305510023888898741046620000004323232412340356761782337-0988348897897799
Q gi|255764505|r 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTL-SVEDVMIKNPKVILED 299 (341)
Q Consensus 221 ~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~-~v~~iMt~~p~~I~~d 299 (341)
.++|. .+.+++.++.++.+|+..|.+++++.++|++.. +++|++|++|+++.+....... ++.++|++++.++.++
T Consensus 2 ~~~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~-~l~Giit~~di~~~~~~~~~~~~~v~~i~~~~~~~~~~~ 78 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVDPD 78 (117)
T ss_pred CCCCC--CCCEEECCCCCHHHHHHHHHHCCCEEEEEEECC-EEEEEEEHHHHHHHHHCCCCCCCHHHHHHCCCCEEECCC
T ss_conf 65442--688089899819999999987493389974399-999999989998766416655331788625884677799
Q ss_pred CCHHHHHHHHHH-CCCCEEEEEECCC-EEEEEEEHHHHH
Q ss_conf 878999999996-7995899980698-489998588897
Q gi|255764505|r 300 TLLTVAMQLLRQ-HNISVLMVVDDCQ-KAIGIVHFLDLL 336 (341)
Q Consensus 300 ~~i~eAl~lM~~-~kI~~LpVVD~~~-~lvGiIt~~DLl 336 (341)
.++.++.++|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus 79 ~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 79 TPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHCC
T ss_conf 889999999987267762569988988799898878749
No 112
>PRK02947 hypothetical protein; Provisional
Probab=99.39 E-value=2.1e-11 Score=103.30 Aligned_cols=160 Identities=23% Similarity=0.211 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCC---CCCCCHHHH-------------------C
Q ss_conf 6699999999827---99599993381379999999998750886110---123302320-------------------2
Q gi|255764505|r 51 FQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLASTGTPSFF---VHAAEASHG-------------------D 105 (341)
Q Consensus 51 ~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~---~~~~ea~Hg-------------------d 105 (341)
+.+.+|.+++.++ .|.|+++|.|-|..+|+.+. -+-|--+.+ +++.-.+|. +
T Consensus 25 ~~I~~Aa~~ia~si~~gg~i~~fGtGHS~~~a~E~f---~RAGGla~~~pI~~~~l~~~~g~~~s~~~ER~~g~a~~il~ 101 (247)
T PRK02947 25 DAIKQAADLVADSIANGGRIYVFGTGHSHMAAEEVF---YRAGGLAPFNPILEPSLMLHEGAVASSYLERIEGYAKLILD 101 (247)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHH
T ss_conf 999999999999997599799988851648999874---11476433130034110254786665312225509999998
Q ss_pred CCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCC-----------HHHHCCCCEEEEEEEC-------C
Q ss_conf 301210470789836878078876666632045627998447889-----------5452145337688615-------5
Q gi|255764505|r 106 LGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS-----------VVACHADIVLTLPKEP-------E 167 (341)
Q Consensus 106 lg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S-----------~la~~ad~~l~~~~~~-------E 167 (341)
.--++++|++|.+|+||.+.-.++++.++|++|+++|+||+-..| .|.+.||++|+-.++. |
T Consensus 102 ~~~i~~~Dvlii~SnSG~N~~pVE~A~~ak~~G~~VIaiTS~~~s~~~~srH~SGkkL~d~aDiviDN~~p~GDA~l~i~ 181 (247)
T PRK02947 102 RYPIRPGDVLIIVSNSGRNAVPIEMALEAKERGAKVIAVTSLAYSKSVASRHSSGKRLYEVADVVIDNGAPKGDAVLEIE 181 (247)
T ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCEEHHHCCEEEECCCCCCCEEEEEC
T ss_conf 67999998899996787776899999999986996999966788167899897667115636678657999876589878
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCCHHHHH-HHHHHHHHH
Q ss_conf 432475217899999999999999---99985033878887-531100111
Q gi|255764505|r 168 SCPHGLAPTTSAIMQLAIGDALAI---ALLESRNFSENDFY-VLHPGGKLG 214 (341)
Q Consensus 168 a~~~~~aPt~Stt~~l~~~Dalav---~l~~~~~~t~~df~-~~HPgG~lg 214 (341)
.-.....|+++.+.. ++.+++.+ ..+..+|+++.-|. .|=|||.=-
T Consensus 182 g~~~kvgp~STi~g~-~i~n~i~~e~~~~L~~~G~~pPv~~S~N~~ggde~ 231 (247)
T PRK02947 182 GLEAKVGPTSTVVGV-AILNAIFAEAAEELVERGIDPPVFLSANIDGGDEH 231 (247)
T ss_pred CCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH
T ss_conf 977775757789999-99999999999999977999986762788883899
No 113
>PRK11573 hypothetical protein; Provisional
Probab=99.35 E-value=1.2e-11 Score=105.02 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCHHHHH
Q ss_conf 338788875311001111243333321047543055100238888987410466200000043-2323241234035676
Q gi|255764505|r 198 NFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDIFRNF 276 (341)
Q Consensus 198 ~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDlrR~l 276 (341)
.+..++-...+ +.+.-.=++|+|+|+|..++-.++.+.++.++++.+.+++++..||.+++ ++++|++.-+|+.+.+
T Consensus 169 ~l~~~e~~mi~--~il~l~~~~v~eiMtPR~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~iiGiv~~kdl~~~~ 246 (413)
T PRK11573 169 QISRRNQDMLL--SVLDLEKVTVDDIMVPRNEIIGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAWRLM 246 (413)
T ss_pred CCCHHHHHHHH--HHHCCCCCEEHEEEEECCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEHHHHHHH
T ss_conf 67879999999--8725189890118620022689747899999999866338754258547888659999825778776
Q ss_pred HCCCCCCCHHHHCC--CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 17823370988348--897897799878999999996799589998069848999858889743
Q gi|255764505|r 277 HKDLNTLSVEDVMI--KNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 277 ~~~~~~~~v~~iMt--~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.+.- +.....++. ++|.+|+++.++.++++.|++++.+...|||+.|...|+||+.|++++
T Consensus 247 ~~~~-~~~~~~l~~~~~~~~fVpe~~~~~~lL~~~~~~~~h~AiVvDEyGg~~GiVTlEDilEe 309 (413)
T PRK11573 247 TEKK-EFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEE 309 (413)
T ss_pred HCCC-CCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 4266-68878887514787796898909999999884286379999489988899549999999
No 114
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.30 E-value=1.9e-11 Score=103.74 Aligned_cols=106 Identities=27% Similarity=0.344 Sum_probs=78.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 59999338137999999999875088611012330232023012104707898368780788766666320456279984
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
.|+++|+|+||+.+.-+...+...+..-++++.. |..-+.+.++|+||++|+||||+|++.+++.|+++|+++|++|
T Consensus 1 ~Ivv~GmGGS~i~gd~l~~~~~~~~~vPv~v~rd---y~lP~~v~~~~lvi~~S~SGnTeEtl~~~~~a~~~ga~vi~it 77 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKD---YTLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC---CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9899956388899999999970579988798489---9898755878789999289796899999999998599099984
Q ss_pred CCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 4788954521453376886155432475217899
Q gi|255764505|r 146 SENKSVVACHADIVLTLPKEPESCPHGLAPTTSA 179 (341)
Q Consensus 146 ~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~St 179 (341)
+ ..+|+++|.-. .+|..+= |-+..|.++.
T Consensus 78 s--GG~L~~~a~~~-~~p~v~i--P~g~~PR~a~ 106 (119)
T cd05017 78 S--GGKLLEMAREH-GVPVIII--PKGLQPRAAF 106 (119)
T ss_pred C--CCHHHHHHHHC-CCCEEEC--CCCCCCHHHH
T ss_conf 9--95599999887-9998987--9999957999
No 115
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=102.94 Aligned_cols=137 Identities=17% Similarity=0.283 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEEECCCHHHHHH
Q ss_conf 387888753110011112433333210475430551002388889874104662000000-4323232412340356761
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD-EGQKLKGIITEGDIFRNFH 277 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd-~~~~liGIITdgDlrR~l~ 277 (341)
|+.++.....--=.++. ..|+++|+|+.++..++.+.++.++.+.+.+.+++..||++ +.+.++|++.-+|+.+...
T Consensus 189 ~~~~E~~mi~~v~~l~~--~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~ 266 (429)
T COG1253 189 LEEEEREMINNVLDLDD--RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALL 266 (429)
T ss_pred CCHHHHHHHHHHHCCCC--CCCCEEEEECCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHHH
T ss_conf 28899999996502137--5626176031557994189999999999975898658788579983788868999997643
Q ss_pred CCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 7823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 278 KDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 278 ~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++.........+ ++|.++++..++.++++.|++.+.+...|+|+.|.+.|+||+.|++++
T Consensus 267 ~~~~~~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEe 326 (429)
T COG1253 267 DGQSDLDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEE 326 (429)
T ss_pred CCCCCCCCCCCC-CCCEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEECCHHHHHHH
T ss_conf 156444420025-787177898979999999886387499999378984332658999999
No 116
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.28 E-value=4e-11 Score=101.33 Aligned_cols=120 Identities=21% Similarity=0.309 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHC-----CCCCEEEECCCCCEEEEEEECCCHHHHHHCC
Q ss_conf 75311001111243333321047543055100238888987410-----4662000000432323241234035676178
Q gi|255764505|r 205 YVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSE-----KRFGCVAVVDEGQKLKGIITEGDIFRNFHKD 279 (341)
Q Consensus 205 ~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~-----~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~ 279 (341)
...+|-.+-| -+|.+ +...+.++.|+.+++..+.+ .....+.|+|+++++.|+++.+++ +. .
T Consensus 126 ~l~y~e~taG-------~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~L---l~-a 192 (451)
T COG2239 126 LLSYPEDTAG-------RIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDL---LT-A 192 (451)
T ss_pred HCCCCHHHHH-------CCCEE--EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEHHHH---HC-C
T ss_conf 6589834420-------00130--2587206758999999999723675662379998776646777569998---64-8
Q ss_pred CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 2337098834889789779987899999999679958999806984899985888974
Q gi|255764505|r 280 LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 280 ~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
-.+.+++++|.+.|+++.+++...++.++|++|++-.+||||++++++|++|+.|++.
T Consensus 193 ~~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiid 250 (451)
T COG2239 193 EPDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIID 250 (451)
T ss_pred CCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCEECCEECCCCCEEEEEEHHHHHH
T ss_conf 9576899872435624365578799999999828701535778984632554999999
No 117
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=7.5e-11 Score=99.32 Aligned_cols=182 Identities=17% Similarity=0.244 Sum_probs=129.7
Q ss_pred HHHHHHHHHH-HCCCCCEEEEECCCCCHHHHCCCCEEEEE---EECCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7887666663-20456279984478895452145337688---6155432475--2178999999999999999998503
Q gi|255764505|r 125 DELKAILYYA-RRFSIPLIAITSENKSVVACHADIVLTLP---KEPESCPHGL--APTTSAIMQLAIGDALAIALLESRN 198 (341)
Q Consensus 125 ~e~~~~~~~~-k~~~~~iI~iT~~~~S~la~~ad~~l~~~---~~~Ea~~~~~--aPt~Stt~~l~~~Dalav~l~~~~~ 198 (341)
.++.+.+..+ ++.+.++|-||-+. .--.+.||-..... +.+...|.++ -|-....+.
T Consensus 201 ~~i~~~l~~L~~~~~~TiifVTHDl-~eA~~laDRIaVM~~G~Ivq~GtpeeI~~~Pa~~yV~~---------------- 263 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRT---------------- 263 (400)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCH-HHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH----------------
T ss_conf 9999999999998599999989999-99998699999998988999728899986799868998----------------
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCEEE--EEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3878887531100111-1243333321047543055--100238888987410466200000043232324123403567
Q gi|255764505|r 199 FSENDFYVLHPGGKLG-TLFVCASDVMHSGDSIPLV--KIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg-~~Ll~V~DiM~~~~~ip~V--~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
|. +.+. .++++++|+|.+.. .+.+ .+.....+|++.|.+.+..+++|+|+++++.|+++..|+++.
T Consensus 264 -----F~-----~~v~~~~~~~a~~i~~~~~-~~~~~~~~~~~~~~al~~m~~~~~~~~~vvd~~~~~~G~v~~~~~~~~ 332 (400)
T PRK10070 264 -----FF-----RGVDISQVFSAKDIARRTP-NGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKAA 332 (400)
T ss_pred -----HH-----CCCCHHHCEEHHHHHCCCC-CCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHH
T ss_conf -----75-----5477877023989624687-521314888699999999985598679998699808899889999977
Q ss_pred HHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 617823370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 276 FHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 276 l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
... ...+.+.|.+++.++.+++++.+++..|.+.... +||||++++++|+||...++++
T Consensus 333 ~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~-~~Vvd~~~~l~G~it~~~ll~~ 391 (400)
T PRK10070 333 LTQ---QQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRA 391 (400)
T ss_pred HHC---CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCEEEEEEHHHHHHH
T ss_conf 633---7763667505884239999899999999728996-3898799919999987999999
No 118
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.26 E-value=7.9e-11 Score=99.16 Aligned_cols=104 Identities=30% Similarity=0.375 Sum_probs=72.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 599993381379999999998750-8861101233023202301210470789836878078876666632045627998
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
+|+++|+|+||+.+.-+..-+... .+|-+ ++-. |.=-+.+.++++||++|+||||.|++.+++.|+++|+++|+|
T Consensus 36 ~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~-v~~~---y~lP~~v~~~tLVIavSySGnTeETL~a~~~A~~rga~vi~I 111 (328)
T PRK08674 36 NIVISGMGGSGIGGDLLRSLLLDEWKKPVF-VVRD---YFLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKKRGAKIIAI 111 (328)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCEE-EECC---CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 299995756489999999998447998679-8558---879986588857999828999779999999999759958999
Q ss_pred ECCCCCHHHHCCCCE-E-EEEEECCCCCCCCCHHHHHH
Q ss_conf 447889545214533-7-68861554324752178999
Q gi|255764505|r 145 TSENKSVVACHADIV-L-TLPKEPESCPHGLAPTTSAI 180 (341)
Q Consensus 145 T~~~~S~la~~ad~~-l-~~~~~~Ea~~~~~aPt~Stt 180 (341)
|+ .++|++.|+-. . .+.+ |-++.|.++..
T Consensus 112 ts--GG~L~~~a~~~~~~~i~v-----p~g~~pRaa~~ 142 (328)
T PRK08674 112 TS--GGKLAEMAKEKGVPVIKI-----PGGYQPRAAFG 142 (328)
T ss_pred EC--CCCHHHHHHHCCCCEEEE-----CCCCCHHHHHH
T ss_conf 48--970678998779988942-----69864699999
No 119
>KOG1268 consensus
Probab=99.23 E-value=2e-10 Score=96.30 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC----HHHHHHHHHHHHHCCCCEEEEECCCHHHHH---HHHHHHHHH
Q ss_conf 332457999999999999999999999-720011----366999999998279959999338137999---999999875
Q gi|255764505|r 17 SLMKNSTVQCALRSIIAEKRGLSSLES-SLQGEL----SFQFHCAVEKIKAIKGRVVITGIGKSGHIG---SKLASTLAS 88 (341)
Q Consensus 17 ~~~~~~~~~~a~~~l~~e~~al~~l~~-~l~~~~----~~~~~~av~~i~~~~grv~~~GvG~S~~ia---~k~a~tl~s 88 (341)
..||-+.-.-.+|-|..+.+++-++.+ +.+... -..+..-...|..|+ |+++.|+|.|+|-| +.+-..|+
T Consensus 304 qImKG~yd~yMqKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~r-Rli~iacgtSyhs~~A~R~ilEEL~- 381 (670)
T KOG1268 304 QIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRCR-RLIMVACGTSYHSALATRPILEELS- 381 (670)
T ss_pred HHCCCCHHHHHHHHHHHCCHHHHHHCCCEECCCCCEEEECCCCCHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHH-
T ss_conf 97178637765667761745777750561314664466157644114553115-6479984440888877789999985-
Q ss_pred CCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCC
Q ss_conf 08861101233023202301210470789836878078876666632045627998447889545214533768861554
Q gi|255764505|r 89 TGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPES 168 (341)
Q Consensus 89 ~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea 168 (341)
++|...--++|.+-- -+-+-.+|+.+++|+||||.+.+-+++|++++|+-+||||+...|++++..++-..+...+|
T Consensus 382 -eiPV~vElAsDflDR-~~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpE- 458 (670)
T KOG1268 382 -EIPVSVELASDFLDR-NTPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPE- 458 (670)
T ss_pred -CCCEEEEHHHHHHHC-CCCCEECCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEECCCCCC-
T ss_conf -697562214456750-79820055799992687628899999988863966998752557620023344223057874-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3247521789999999999999999
Q gi|255764505|r 169 CPHGLAPTTSAIMQLAIGDALAIAL 193 (341)
Q Consensus 169 ~~~~~aPt~Stt~~l~~~Dalav~l 193 (341)
.+.|.|..-|.|..-.=.+|..+
T Consensus 459 --igvAsTKaYTSQ~i~lvm~aL~~ 481 (670)
T KOG1268 459 --IGVASTKAYTSQYIALVMFALWM 481 (670)
T ss_pred --CCEEECHHHHHHHHHHHHHHHHH
T ss_conf --45331147789999999999996
No 120
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=99.22 E-value=1.9e-11 Score=103.68 Aligned_cols=145 Identities=19% Similarity=0.204 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHH---HHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 9999999998503387888753110011112---433333---2104754305510023888898741046620000004
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTL---FVCASD---VMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDE 259 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~---Ll~V~D---iM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~ 259 (341)
..-+|+++.++-|+.. .|-.=++-.+ ..+|+. .|.. +--++.|+.++.++...|.+++++.+||+++
T Consensus 49 e~~MAiamA~~GGiGV-----IHrn~sie~Q~~~V~~VK~~e~g~i~--~Piti~p~~ti~~~~~l~~~~~~sg~pVv~~ 121 (467)
T pfam00478 49 ESRMAIAMAREGGIGV-----IHKNMSIEEQAEEVRKVKRFESGFIT--DPVTVSPDTTVAEALELKERYGISGVPVTED 121 (467)
T ss_pred CHHHHHHHHHCCCEEE-----ECCCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 8999999998898899-----96899999999999999743368217--8753698765999999989728783268207
Q ss_pred CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf 32323241234035676178233709883488978977998789999999967995899980698489998588897436
Q gi|255764505|r 260 GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 260 ~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
++.+.|+++-.|.|-. ...........|++++++..++.+..+|.++|.++++..+||||++++++|++|..|+.+..
T Consensus 122 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~lvt~~~~~~~~ea~~~l~~~kieklpvvd~~g~L~glit~kDi~k~~ 199 (467)
T pfam00478 122 GKLLGGLVGIRTSRDI--DFLSKVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKAR 199 (467)
T ss_pred CCEEEEEEEEECCCCC--CCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEEHHHHHHHH
T ss_conf 9746899877624433--44543201101355427724889989999999975564154446788378888743467742
No 121
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=99.21 E-value=4.5e-10 Score=93.66 Aligned_cols=158 Identities=25% Similarity=0.304 Sum_probs=105.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC--C-------CCCCCCCC-H-HH-----H------CCCEEEC
Q ss_conf 99999998279959999338137999999999875088--6-------11012330-2-32-----0------2301210
Q gi|255764505|r 54 HCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGT--P-------SFFVHAAE-A-SH-----G------DLGMITR 111 (341)
Q Consensus 54 ~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~--~-------a~~~~~~e-a-~H-----g------dlg~i~~ 111 (341)
....+.++|- ||+.++|.|-|..+|+.+... -|- | ...+|-.- | .| | +.-.+++
T Consensus 29 ~lVAesi~n~-g~i~~FG~GHShm~aeEv~yR---AGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i~~ 104 (243)
T COG4821 29 KLVAESIMND-GRIYVFGSGHSHMLAEEVFYR---AGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQIRP 104 (243)
T ss_pred HHHHHHHHCC-CEEEEECCCHHHHHHHHHHHH---CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998549-879996486288999999864---378001132147716521352100045765317777899966887
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCC-----------HHHHCCCCEEEEEEEC-----CCCC--CCC
Q ss_conf 470789836878078876666632045627998447889-----------5452145337688615-----5432--475
Q gi|255764505|r 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKS-----------VVACHADIVLTLPKEP-----ESCP--HGL 173 (341)
Q Consensus 112 ~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S-----------~la~~ad~~l~~~~~~-----Ea~~--~~~ 173 (341)
+||+|.||+||+.+--++++.++|++|+++|++|+-.-| .|...+|++|+-...+ |.+. .-.
T Consensus 105 ~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ei~~ 184 (243)
T COG4821 105 NDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGSEIKV 184 (243)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHCHHCCCCHHHHHHHCCEEEECCCCCCCHHEEECCCCCCC
T ss_conf 88899980799898443899999865976999854543231110154156776521056517986662101354743323
Q ss_pred CHHHHHHHHHHHHHHH--HHHHHHHCCCCHHHHHH-HHHHHHHHH
Q ss_conf 2178999999999999--99999850338788875-311001111
Q gi|255764505|r 174 APTTSAIMQLAIGDAL--AIALLESRNFSENDFYV-LHPGGKLGT 215 (341)
Q Consensus 174 aPt~Stt~~l~~~Dal--av~l~~~~~~t~~df~~-~HPgG~lg~ 215 (341)
+||++.+..+.+-..+ ++.+|-.+||++--|.. |-||+..-.
T Consensus 185 ~ptSt~~g~~ilqa~faeai~~mv~~g~~pPvf~S~Nidgad~~N 229 (243)
T COG4821 185 GPTSTVSGVTILQATFAEAIELMVEKGYTPPVFLSANIDGADEYN 229 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
T ss_conf 674026999999999999999998579999846645788715788
No 122
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=99.18 E-value=2e-10 Score=96.20 Aligned_cols=117 Identities=25% Similarity=0.338 Sum_probs=104.3
Q ss_pred HHHHHHCCCCCCEE-EEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEEC
Q ss_conf 33332104754305-51002388889874104662000000432323241234035676178233709883488978977
Q gi|255764505|r 219 CASDVMHSGDSIPL-VKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVIL 297 (341)
Q Consensus 219 ~V~DiM~~~~~ip~-V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~ 297 (341)
.++++|+..+..|+ +.++.+.++|++.|.+.+..++.|+|++++|.|++.-.++..+..+ +..+.++...+|.+|.
T Consensus 243 ~~~~i~~~~~~~~i~~t~~~gp~~Al~Lm~~~~~~s~yvv~~~~~l~G~v~~~~~~~a~~~---~~~~~~~l~~~~~tV~ 319 (372)
T TIGR01186 243 DAERIAKRMNTVPITKTADKGPRSALKLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK---AQSLQDVLIDDILTVD 319 (372)
T ss_pred CHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHHHHH---HHHHHHHHHHCCCCCC
T ss_conf 8899996527732686589887899999986597179999728548877858899988878---7789998620011105
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 99878999999996799589998069848999858889743
Q gi|255764505|r 298 EDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 298 ~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.++.+.|.++...+.++.++|||||+++++|||+..-|+++
T Consensus 320 ~~t~L~e~~~~v~~~~~~YvpVVDE~~~~~GIv~r~~L~~~ 360 (372)
T TIGR01186 320 EGTLLRELLRKVLKAGIKYVPVVDEDQRLVGIVTRASLVDA 360 (372)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 87604899999850799566666145645867647789998
No 123
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.10 E-value=2.9e-10 Score=95.07 Aligned_cols=122 Identities=20% Similarity=0.319 Sum_probs=105.6
Q ss_pred HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEC-CCCCEEEEEEECCCHHHHHHCCCCCCCHHHHC--CCCC
Q ss_conf 43333321047543055100238888987410466200000-04323232412340356761782337098834--8897
Q gi|255764505|r 217 FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVV-DEGQKLKGIITEGDIFRNFHKDLNTLSVEDVM--IKNP 293 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vv-d~~~~liGIITdgDlrR~l~~~~~~~~v~~iM--t~~p 293 (341)
-++|+|+|.+..++--++.|.+.+++++.+.....+.+|+- |+-++++|++.-+|+.|++.+.-. ..-.+++ -.+|
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~~k~d~~~~a~ep 277 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-FTKEDILRAADEP 277 (423)
T ss_pred CCEEEEEECCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHCCC
T ss_conf 355440021322215534899899999999628877400144874675334319999999634586-4075799874487
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf 8977998789999999967995899980698489998588897436
Q gi|255764505|r 294 KVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 294 ~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
++|++.+++.+-+..|+++|-+.-.||||.|.+.|+||..|++++-
T Consensus 278 yFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 278 YFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEI 323 (423)
T ss_pred EECCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEHHHHHHHH
T ss_conf 4568999289999999972512799982467677664699999998
No 124
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=99.09 E-value=6.4e-10 Score=92.55 Aligned_cols=187 Identities=21% Similarity=0.323 Sum_probs=108.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHC--CCCCCCC----CCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 99599993381379999999998750--8861101----23302320230121047078983687807887666663204
Q gi|255764505|r 64 KGRVVITGIGKSGHIGSKLASTLAST--GTPSFFV----HAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRF 137 (341)
Q Consensus 64 ~grv~~~GvG~S~~ia~k~a~tl~s~--G~~a~~~----~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~ 137 (341)
+ +|+|+|+|+||++|+-+..-.... -.|.|.. -|. .+..+..|||+||||+|.|++...+.|+++
T Consensus 28 ~-~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvfvv~DY~~p~--------~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~ 98 (338)
T TIGR02128 28 D-EIVISGMGGSGIAGRILSELLLEKSFEVPVFVVKDYRLPA--------FVDGKTLLIAVSYSGNTEETLSAVEEAKKK 98 (338)
T ss_pred C-CEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC--------CCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 6-2278725657899999999865324788888870778969--------889851799986178668999999999865
Q ss_pred CCCEEEEECCCCCHHHHCC--CCEEEEEEECCCCCCCCCHHHHHH------HHHHHHHHHHHHHHHHCCCCHHH------
Q ss_conf 5627998447889545214--533768861554324752178999------99999999999999850338788------
Q gi|255764505|r 138 SIPLIAITSENKSVVACHA--DIVLTLPKEPESCPHGLAPTTSAI------MQLAIGDALAIALLESRNFSEND------ 203 (341)
Q Consensus 138 ~~~iI~iT~~~~S~la~~a--d~~l~~~~~~Ea~~~~~aPt~Stt------~~l~~~Dalav~l~~~~~~t~~d------ 203 (341)
++++|+||+. -.|.+.| +=+-.+.+ |-|+.|..|.= .++++.. .+.+.+|-..+.
T Consensus 99 ~~~~~aITSG--G~L~e~A~e~g~~~i~i-----P~G~qPR~a~pysfiPyl~~~~~~----~~~~~~g~d~~~~~~~~g 167 (338)
T TIGR02128 99 GAKVIAITSG--GKLEEMAKEEGLDVIKI-----PKGLQPRAALPYSFIPYLLTALIL----MLIKPLGIDIEEAERVLG 167 (338)
T ss_pred CCCEEEEECC--CHHHHHCCCCCCCEEEE-----CCCCCCCCCCCHHHHHHHHHHHHH----HHHCCCCCCHHHHHHHHH
T ss_conf 7955999448--53886301148756882-----886113210405689999999999----762124742436666788
Q ss_pred -----HHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEEEHH-HHHHHHHHH----HCCCC-----CEEEECCCCCEEEEEE
Q ss_conf -----8753110-011112433333210475430551002-388889874----10466-----2000000432323241
Q gi|255764505|r 204 -----FYVLHPG-GKLGTLFVCASDVMHSGDSIPLVKIGC-PLIDAITIL----SEKRF-----GCVAVVDEGQKLKGII 267 (341)
Q Consensus 204 -----f~~~HPg-G~lg~~Ll~V~DiM~~~~~ip~V~~~~-si~eal~~m----~~~~~-----g~v~Vvd~~~~liGII 267 (341)
+...-|. =+..+ ..+..+. .+.++|.|-... +...+.... +++.- ..++=.| +|.++|.-
T Consensus 168 d~~E~l~~~~~~~k~~~~--~LA~~i~-~G~riPvIy~~~G~~~~iA~R~K~eiNENAK~pA~~~~~pE~n-HNei~~~~ 243 (338)
T TIGR02128 168 DLKERLIEDTEKLKALAK--RLAEEIY-NGYRIPVIYSSSGPTRPIAERWKNEINENAKIPAYFNILPELN-HNEIEGLE 243 (338)
T ss_pred HHHHHHHHCCCHHHHHHH--HHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 877653201652357899--9999986-7920518870788714776777555533126532010057875-55212567
Q ss_pred ECCCHHH
Q ss_conf 2340356
Q gi|255764505|r 268 TEGDIFR 274 (341)
Q Consensus 268 TdgDlrR 274 (341)
.-..+++
T Consensus 244 ~~~~~~~ 250 (338)
T TIGR02128 244 DPKEVYG 250 (338)
T ss_pred CCCCCCC
T ss_conf 8620001
No 125
>LOAD_sis consensus
Probab=98.96 E-value=3.7e-09 Score=86.98 Aligned_cols=86 Identities=31% Similarity=0.301 Sum_probs=67.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCC--CCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 95999933813799999999987508--8611012330232023012104707898368780788766666320456279
Q gi|255764505|r 65 GRVVITGIGKSGHIGSKLASTLASTG--TPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLI 142 (341)
Q Consensus 65 grv~~~GvG~S~~ia~k~a~tl~s~G--~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI 142 (341)
+|++++|+|+|++.|..++..|...+ .|....++.+..+ ..-...++|++|++|+||+|.|++..++.+|++|+++|
T Consensus 3 ~rii~ig~ggSs~~a~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~iS~SG~t~e~~~a~~~~~~~~~~~i 81 (90)
T LOAD_sis 3 GRVVFIGAGGSALGAQLLAKALAERGAVIFVSVNVADEFLA-RVLALLDDDLLVIISKSGGTTETLLAALLAKKRGAKTI 81 (90)
T ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 42999997019999999999999997499769974531106-68878978889998789888999999999998899399
Q ss_pred EEECCCCCH
Q ss_conf 984478895
Q gi|255764505|r 143 AITSENKSV 151 (341)
Q Consensus 143 ~iT~~~~S~ 151 (341)
++|++++|+
T Consensus 82 ~it~~~~s~ 90 (90)
T LOAD_sis 82 AITNVAGST 90 (90)
T ss_pred EEECCCCCC
T ss_conf 996888889
No 126
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.90 E-value=4.2e-09 Score=86.59 Aligned_cols=56 Identities=36% Similarity=0.510 Sum_probs=53.0
Q ss_pred CCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 37098834889789779987899999999679958999806984899985888974
Q gi|255764505|r 282 TLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 282 ~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
...|+|+|+++|+++++++++.+|+++|.+++++.|||||++|+++|+||..||-+
T Consensus 57 ~~qV~DIm~~~~vti~~~~sl~eA~~lM~e~~i~~LPVVD~~g~l~GiIT~~DIAe 112 (113)
T cd04597 57 HPRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred CCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 50566631378834199982999999999849987869889993999987787435
No 127
>KOG1764 consensus
Probab=98.86 E-value=1.6e-08 Score=82.34 Aligned_cols=110 Identities=25% Similarity=0.372 Sum_probs=92.4
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC-C--CCCC-HHHHC-----CCC-CEEECC
Q ss_conf 430551002388889874104662000000432323241234035676178-2--3370-98834-----889-789779
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD-L--NTLS-VEDVM-----IKN-PKVILE 298 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~-~--~~~~-v~~iM-----t~~-p~~I~~ 298 (341)
++..+.+++++.+|++.|...+++.+||+|.+++.+|.++-.|++.....+ + .+.+ +++.- ... .+++.+
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~ 317 (381)
T KOG1764 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRP 317 (381)
T ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCCCEECCCCCEECCEEEEHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 77775178708999999987045744347577855321562001215642776777732421353315545687379843
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 9878999999996799589998069848999858889743
Q gi|255764505|r 299 DTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 299 d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++++.+++..|..++++++.|||++|.++|+|+..|++..
T Consensus 318 ~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~ 357 (381)
T KOG1764 318 TSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSY 357 (381)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 7749999999987386059998689867987558999999
No 128
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.8e-08 Score=82.03 Aligned_cols=127 Identities=17% Similarity=0.311 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCC-CCEEEEEEECCCHHHHHHCCCCCCCHHHHC
Q ss_conf 0111124333332104754305510023888898741046620000004-323232412340356761782337098834
Q gi|255764505|r 211 GKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDE-GQKLKGIITEGDIFRNFHKDLNTLSVEDVM 289 (341)
Q Consensus 211 G~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~-~~~liGIITdgDlrR~l~~~~~~~~v~~iM 289 (341)
|.+--.=++|+|+|+|..++-+++.+.++.+.+..|.+...+..||..+ ...+.||+-.+||.|.+..+.....++++.
T Consensus 60 Gvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lL 139 (293)
T COG4535 60 GVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELL 139 (293)
T ss_pred HHHHHHHHHHHHHCCCHHHHEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
T ss_conf 88999875476611227782221013799999999998511558711477001344545887887740786546388861
Q ss_pred CCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 8897897799878999999996799589998069848999858889743
Q gi|255764505|r 290 IKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 290 t~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++.++|++...+...++-|+..+-+-..|||+-|-+-|+||+.|+|+.
T Consensus 140 -RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEq 187 (293)
T COG4535 140 -RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQ 187 (293)
T ss_pred -CCCEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHH
T ss_conf -552434661269999999985047269998225772016779999999
No 129
>KOG2550 consensus
Probab=98.71 E-value=4.4e-08 Score=79.21 Aligned_cols=120 Identities=26% Similarity=0.286 Sum_probs=100.5
Q ss_pred HHHHHHHHCCCCCCE-EEEEHHHHHHHHHHHHCCCCCEEEECCC---CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCC
Q ss_conf 433333210475430-5510023888898741046620000004---323232412340356761782337098834889
Q gi|255764505|r 217 FVCASDVMHSGDSIP-LVKIGCPLIDAITILSEKRFGCVAVVDE---GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKN 292 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip-~V~~~~si~eal~~m~~~~~g~v~Vvd~---~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~ 292 (341)
..+|+.+-+.--.=| +..|+.++.++++.-..+++..++|+.+ ..+|+|++|.+|+... .-....+.++|+++
T Consensus 104 v~~vK~~~~g~~~dp~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~---~~~~~~~~~vmt~~ 180 (503)
T KOG2550 104 VRRVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL---EDNSLLVSDVMTKN 180 (503)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHH---HCCCCHHHHHHCCC
T ss_conf 888887522545686203775431055652065663354211577546515777742023455---34551124330344
Q ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf 78977998789999999967995899980698489998588897436
Q gi|255764505|r 293 PKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 293 p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
|++...+.++.++-+++++.+-.-|||||++++++-+|+..||.|..
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550 181 PVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEEHHHHHHHC
T ss_conf 30144446677889998763148652343677623343334566502
No 130
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.66 E-value=8.2e-08 Score=77.23 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=52.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+++|.+ ++.+|++++++.+|+..|.+++++++||+|++|+++||||.+|+.|+
T Consensus 67 ~~v~~iM~~--~~itv~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiIt~~DilrA 122 (122)
T cd04635 67 PTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 899996868--98799896939999998898099889899379989999997996369
No 131
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.65 E-value=4.7e-06 Score=64.39 Aligned_cols=144 Identities=18% Similarity=0.158 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHH-HH
Q ss_conf 6699999999827995999933813799999999987508-861101233023202301210470789836878078-87
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTG-TPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDE-LK 128 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G-~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e-~~ 128 (341)
+.+.+.++.+.+++ +++|.|-|-+.-+|...|-+|.-+. ++|--+.++|.-||-+.+|.++.-+|++-..++..+ ++
T Consensus 448 ~~i~~ia~~~~~~~-~~~~lGrG~~~~~A~EgALKlKEisYihAEgy~agElKHGPiALI~~~~pvI~i~~~~~~~~k~~ 526 (604)
T PRK00331 448 EQIEELAEDFADKR-NALFLGRGIDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPVVAIAPNDELFEKTK 526 (604)
T ss_pred HHHHHHHHHHHCCC-CEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEECCCCCEEEEECCCHHHHHHH
T ss_conf 99999999984456-48997267862778888887776663543135302304674123349984899966851589999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 666663204562799844788954521453376886155432475217899999999999999999850338788
Q gi|255764505|r 129 AILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 129 ~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
..++..|.||+++|.||...+......+|..+.+|...| -+ +-....+-++.||--+...||+.++.
T Consensus 527 sn~~EikaRga~vi~i~~~~~~~~~~~~~~~i~iP~~~~----~l----~pil~~IplQLlAY~~A~~~G~d~D~ 593 (604)
T PRK00331 527 SNIQEVKARGARVIVIADEGDEAVEDDADHVIEIPEVHE----LL----APLLYVVPLQLLAYHVALARGTDVDQ 593 (604)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCC----HH----HHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999976984999975883113456636998799860----16----66999999999999999976999899
No 132
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.65 E-value=1e-07 Score=76.54 Aligned_cols=56 Identities=27% Similarity=0.499 Sum_probs=52.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +++++++++++.+++..|.+++++++||+|++|+++||||..|+.++
T Consensus 69 ~~v~~iM~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiIt~~Dil~A 124 (124)
T cd04600 69 ETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 898995779--98699898979999999997793499999579989999978997469
No 133
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.6e-07 Score=75.14 Aligned_cols=61 Identities=26% Similarity=0.350 Sum_probs=53.9
Q ss_pred HHHHH-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEC--CCCCEEEEEEECCCHHHH
Q ss_conf 11124-3333321047543055100238888987410466200000--043232324123403567
Q gi|255764505|r 213 LGTLF-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVV--DEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 213 lg~~L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vv--d~~~~liGIITdgDlrR~ 275 (341)
.-+.+ .+|+|+|.+ +++++.+++++.+|+..|.+++++++||+ |++|+++||+|.+|+.|+
T Consensus 65 ~~~~~~~~V~~iM~~--~vitv~~~~~i~~a~~~M~~~~i~~lpVv~~dd~~~lvGIiT~~DilrA 128 (128)
T cd04632 65 KERMLDLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred HHHHHCCCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 223406799996679--9879999293999999999779978966847899989999996996469
No 134
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.7e-07 Score=75.00 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=50.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+++|.+ +++++++++++.+|+..|.+++.+++||+| +|+++|+||.+|+.|+
T Consensus 60 ~~v~~iM~~--~~~tv~~~~~~~~a~~~m~~~~~~~lpVvd-~g~lvGiIt~~DilrA 114 (114)
T cd04629 60 ATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-DGKLVGQISRRDVLRA 114 (114)
T ss_pred CEEHHHCCC--CCEEEECCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 591885146--887995799999999998866983999998-9999999997996339
No 135
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.59 E-value=1.7e-07 Score=74.96 Aligned_cols=47 Identities=36% Similarity=0.511 Sum_probs=44.7
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 97897799878999999996799589998069848999858889743
Q gi|255764505|r 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 292 ~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
+|++++|++++.+|+++|.+++++++||||++|+++|++|..|++++
T Consensus 1 ~~itv~~~~~v~~a~~~m~~~~i~~lPVVd~~~~lvGiit~~Dil~~ 47 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 98699987929999999998099857699899919999887999986
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.58 E-value=1.9e-07 Score=74.52 Aligned_cols=55 Identities=29% Similarity=0.464 Sum_probs=50.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++.+|++++++.+|+..|.++++.++||+|+ |+++|+||.+|+.|+
T Consensus 81 ~~V~~iM~~--~~~~v~~~~~l~~~~~~m~~~~i~~lpVvd~-~~lvGiIt~~DilkA 135 (135)
T cd04586 81 RKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRG-GRLVGIVSRADLLRA 135 (135)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 898995789--9879959795999999999759609999999-999999997996459
No 137
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=2.4e-07 Score=73.77 Aligned_cols=55 Identities=31% Similarity=0.350 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.++.++|.+ +++++.|++++.+|++.|.+++++++||+| +++++|+||.+|+.|+
T Consensus 52 ~~v~~iMt~--~~~tv~~~~~~~~a~~~m~~~~i~~lpVvd-~~~lvGiIt~~DilkA 106 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVRA 106 (106)
T ss_pred CHHHHHHCC--CCEECCCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 244675358--973679949199999999876975999999-9999999997995359
No 138
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.56 E-value=2.1e-07 Score=74.17 Aligned_cols=48 Identities=29% Similarity=0.468 Sum_probs=45.9
Q ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 897897799878999999996799589998069848999858889743
Q gi|255764505|r 291 KNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 291 ~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
++|++++|++++.+|+++|++++++++||||++|+++|++|..||+++
T Consensus 2 ~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g~~~G~vt~~~ll~~ 49 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSS 49 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 999798998909999999998499856898799968888879999999
No 139
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=2.5e-07 Score=73.71 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=57.7
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCC---EEEEEEECCCHHH
Q ss_conf 387888753-110011112433333210475430551002388889874104662000000432---3232412340356
Q gi|255764505|r 199 FSENDFYVL-HPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQ---KLKGIITEGDIFR 274 (341)
Q Consensus 199 ~t~~df~~~-HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~---~liGIITdgDlrR 274 (341)
||..|+.+. ..++.+.. ..|+++|....++-++.|++++.+|++.|.+++++++||+|+++ +++|+||..||.|
T Consensus 40 iT~rDl~r~~~~~~~~~~--~pV~~iMT~~P~vvt~~pd~~v~~A~~~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~k 117 (118)
T cd04617 40 VSRKDLLKASIGGADLQK--VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred EEHHHHHHHHHCCCCCCC--CCHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEECEEECCCCCEEEEEEEECCCEEC
T ss_conf 878999999974898467--829998577997199789993999999999829998567943997408999997751504
No 140
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=2.9e-07 Score=73.21 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=46.0
Q ss_pred HHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 221 ~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
...|.. .+.+|.+++++.+|+..|.+++++.++|+|++|+++||||.+|+.|+
T Consensus 68 ~~~~~~--~v~t~~~~~~l~~~~~~m~~~~i~rlpVVD~~~rlvGiIs~~Dilry 120 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 555547--85698999979999999998498579899899979999986882383
No 141
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.53 E-value=3e-07 Score=73.09 Aligned_cols=55 Identities=33% Similarity=0.472 Sum_probs=50.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++.+|.+++++.+|+..|.+++++++||+| +|+++||||..|+.|+
T Consensus 78 ~~v~diMt~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd-~~~lvGiIt~~Dilra 132 (132)
T cd04636 78 KKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVD-DGKLVGIISRGDIIRS 132 (132)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 999996789--987999979499999999962987899998-9999999996882349
No 142
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.52 E-value=3.5e-07 Score=72.62 Aligned_cols=54 Identities=31% Similarity=0.539 Sum_probs=50.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ +++++++++++.+|+..|.+++++++||+| +|+++||||.+|+.|
T Consensus 67 ~~V~~iM~~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd-~~~lvGivt~~Dilr 120 (121)
T cd04584 67 MPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVE-DGRLVGIITETDLLR 120 (121)
T ss_pred CCHHHHCCC--CCCEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHC
T ss_conf 899996679--985898999599999998866961999999-999999998226006
No 143
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.50 E-value=4.1e-07 Score=72.12 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 33332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+.|+|.+ ...++.+++++.+|++.|.+++++++||+|++|+|+|+||..||.+
T Consensus 52 ~v~d~m~~--~~~tv~~d~~l~~a~~~M~~~~i~~lPVVD~~grlvGivT~~Di~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred CHHHCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 53451025--7669979999999999999729876258989990999998688425
No 144
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.50 E-value=4.5e-07 Score=71.83 Aligned_cols=54 Identities=31% Similarity=0.482 Sum_probs=49.9
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
++|+|+|.+ ++.+|.|++++.+|+..|.+++++++||+|+ ++++||||.+|+.|
T Consensus 81 ~~v~diMt~--~vitv~~d~~l~~a~~~M~~~~i~~lPVvd~-~~lvGiIt~~Dilr 134 (135)
T cd04621 81 LVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHCC
T ss_conf 899893889--9889989893999999999719988999989-99999998588116
No 145
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.50 E-value=1.7e-07 Score=74.96 Aligned_cols=74 Identities=26% Similarity=0.332 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH
Q ss_conf 3878887531100111124333332104754305510023888898741046620000004323232412340356761
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~ 277 (341)
||..|.+..--.| +.-.+|+|+|++ ++++|++|..+.||++.|.++++|.++|+|.+|+++||||..|+.+.+.
T Consensus 218 it~~dI~~aia~g---~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 218 ITLSDIAKAIANG---NLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred EEHHHHHHHHHCC---CCCCCHHHHHCC--CCCEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
T ss_conf 9889999999768---965438887505--7704757304999999987638646999846996787885578888864
No 146
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.49 E-value=4e-07 Score=72.22 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=50.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+++++|.+ +++++.+++++.+|++.|.+++++++||+|++++++|++|.+|+.|
T Consensus 55 ~~v~~im~~--~~~~~~~~~~~~~a~~~m~~~~i~~lPVvD~~~~lvGiiT~~Di~k 109 (110)
T cd04605 55 KSVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CCHHHCEEE--CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 763360430--0120146558999999999839619999918998999999377211
No 147
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.49 E-value=4.5e-07 Score=71.80 Aligned_cols=55 Identities=25% Similarity=0.362 Sum_probs=49.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++++|.|++++.+|+..|.+++++++||+| +|+++||+|-+||.++
T Consensus 50 ~~v~d~Mt~--~v~tv~p~~~l~ea~~lM~~~~i~~lPVvd-~gklvGIIT~~Dil~A 104 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILDA 104 (104)
T ss_pred CCHHHEEEC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 984454763--988899989799999999986978789998-9999999996895378
No 148
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=4.5e-07 Score=71.81 Aligned_cols=54 Identities=26% Similarity=0.514 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +++++.+++++.+++..|.++++ +||+|++|+++||||.+|+.|+
T Consensus 63 ~~V~~iM~~--~~~tv~~~~~i~~~~~~m~~~~~--lpVVD~~~~lvGIITr~DilkA 116 (116)
T cd04643 63 LKVIDVMNT--DVPVIIDDADIEEILHLLIDQPF--LPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CCHHHHHCC--CCEEEECCCCHHHHHHHHHHCCE--EEEEECCCEEEEEEEHHHHHCC
T ss_conf 687795156--98899079999999999987898--9999459999999992795579
No 149
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.49 E-value=1.4e-07 Score=75.54 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=51.5
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ ++.++.|++++.+|+..|.++++..+||+|++++++|++|.+|+.|
T Consensus 59 ~~V~~vMt~--~vitv~~~~~i~~a~~~M~~~~i~~lPVVD~~~~~vGiit~~Dilk 113 (114)
T cd04619 59 APVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHEEC
T ss_conf 899996158--9889999890999999888769858899907995999999354542
No 150
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=1e-07 Score=76.55 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=52.1
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+.|+
T Consensus 52 ~~v~~iM~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvde~g~lvGiiT~~Dilra 107 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred CCHHHHCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 726786057--86016999869999999998299689699239989999994784439
No 151
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.47 E-value=1.1e-07 Score=76.20 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHH---H-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 8753110011112---4-33333210475430551002388889874104662000000432323241234035
Q gi|255764505|r 204 FYVLHPGGKLGTL---F-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 204 f~~~HPgG~lg~~---L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
|...+=|=.--+. . .+|+|+|.. +++.+++++|+++|+..|.+++++.+||+|++|+++|++|.+||-
T Consensus 40 ~vL~~f~~~~P~li~~v~~qV~DIm~~--~~vti~~~~sl~eA~~lM~e~~i~~LPVVD~~g~l~GiIT~~DIA 111 (113)
T cd04597 40 YVLEYLGIEPPILLADVHPRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred HHHHHCCCCCCEECCCCCCHHHHHCCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHH
T ss_conf 999984999980021565056663137--883419998299999999984998786988999399998778743
No 152
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.47 E-value=5.3e-07 Score=71.28 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=50.6
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ +++++.+++++.+|+..|.+++++++||+|++++++|++|..||..
T Consensus 54 ~~v~~im~~--~~~tv~~~~~~~~a~~~m~~~~~~~lPVVd~~~~lvGiiT~~dll~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CEEEECCEE--EEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 678751262--0289748999999999998559838889964999999999688237
No 153
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=2.5e-07 Score=73.73 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=49.8
Q ss_pred HHHHHHHCCCCCCEEEE----EHHHHHHHHHHHHCCCCCEEEECCCCC-EEEEEEECCCHHH
Q ss_conf 33333210475430551----002388889874104662000000432-3232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVK----IGCPLIDAITILSEKRFGCVAVVDEGQ-KLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~----~~~si~eal~~m~~~~~g~v~Vvd~~~-~liGIITdgDlrR 274 (341)
++|+|+|.+..++..+. +++++.|++..|.+++...++|+|+++ ++.|+||..||.|
T Consensus 64 l~V~dvMt~~~~~~a~~~~~~~~a~v~d~~~~m~~~~~~hllVvd~~~~~l~GiiS~~DI~R 125 (126)
T cd04640 64 LTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred CCHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 05313355452046302200034859999999998398087499899988989998799426
No 154
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=1.3e-07 Score=75.77 Aligned_cols=56 Identities=32% Similarity=0.439 Sum_probs=51.9
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +..++++++++.+|+..|.+++++++||+|++++++||||..|+.|+
T Consensus 67 ~~v~~iM~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd~~~~lvGiIT~~Diik~ 122 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 899994638--98399999849999999997493089999689989999996883275
No 155
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.46 E-value=6e-07 Score=70.93 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=49.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ ++++|++++++.+|++.|.+++++++||+| +|+++||||..|+.+
T Consensus 89 ~~v~diM~~--~~itv~~~~~l~~a~~~m~~~~i~~lPVvd-~~~lvGIItr~Dilk 142 (143)
T cd04634 89 MKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVE-DGRLVGIVTRGDIIE 142 (143)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHCCC
T ss_conf 898995888--987998989699999999973988899998-999999999577308
No 156
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.45 E-value=6.3e-07 Score=70.76 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=51.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC--CEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043--232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG--QKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~--~~liGIITdgDlrR~ 275 (341)
..|.|+|.+ +++++.+++++.+|+..|.+++++.+||+|++ ++++|++|..|+.|+
T Consensus 58 ~~v~~vmt~--~~~tv~pd~~l~~al~~M~~~~i~~LPVVd~~~~~~lvGiit~~Dil~A 115 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CEEEEEECC--CCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHCC
T ss_conf 794543038--9668999994999999999869988999978999989999997996569
No 157
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family; InterPro: IPR014180 Some members of this protein family are found in genic regions associated with N-acetyl-galactosamine and galactosamine utilisation and are suggested to be isomerases..
Probab=98.45 E-value=5.1e-06 Score=64.14 Aligned_cols=242 Identities=21% Similarity=0.219 Sum_probs=135.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHCCCEEECC--CEEEEEECCCCCHHHHHHHHHHHCC--
Q ss_conf 79959999338137999999999875-088611012330232023012104--7078983687807887666663204--
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLAS-TGTPSFFVHAAEASHGDLGMITRD--DLIIVLSWSGSSDELKAILYYARRF-- 137 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s-~G~~a~~~~~~ea~Hgdlg~i~~~--Dv~i~iS~SG~t~e~~~~~~~~k~~-- 137 (341)
-+=|||+||.|.|+.|++=++.-|++ +|..---+..+|..=.=.+-+.|. -++|-+-.||+++|-+.+++.|.+.
T Consensus 43 ~~LRIvLTGAGTSAF~G~~l~P~L~~~~G~~V~A~pTTDLV~nP~qyL~p~~PTLLvSfaRSGNSPESVAAV~LAdQ~l~ 122 (374)
T TIGR02815 43 EDLRIVLTGAGTSAFIGDALAPWLAKHLGLRVEAVPTTDLVSNPAQYLDPDRPTLLVSFARSGNSPESVAAVELADQLLP 122 (374)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 47758985677547799999999998409815885237777881551464554120221125887657999988742156
Q ss_pred CCCEEEEECCCCCHHHHCC---CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHH
Q ss_conf 5627998447889545214---5337688615543247521789999999999999999-98503387888753110011
Q gi|255764505|r 138 SIPLIAITSENKSVVACHA---DIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIAL-LESRNFSENDFYVLHPGGKL 213 (341)
Q Consensus 138 ~~~iI~iT~~~~S~la~~a---d~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l-~~~~~~t~~df~~~HPgG~l 213 (341)
.+.=.-||||+...|+|++ +-...+-.++|.---+.|=|+|++|+++= ||++-= -+.+.=+.++|++.=-+ +
T Consensus 123 ecyHL~lTCN~~G~L~r~A~~~~~~~~LLMP~~snD~sFAMTSSFscM~la--~l~~lgp~~~~~~~~~~~A~~a~~--~ 198 (374)
T TIGR02815 123 ECYHLVLTCNEEGALARNAVNRSNSFALLMPEESNDRSFAMTSSFSCMMLA--ALAVLGPKTLESKEEERFAKAAEC--I 198 (374)
T ss_pred CCCCCCEECCCHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH--HHHHHCCCCCCHHHHHHHHHHHHH--H
T ss_conf 542032223800056798724896389858743478640023358999999--998625566211469999999988--8
Q ss_pred HHH-H--HHHHHHH-CCCCCCEEEEEHHHHH----H-HHHHH--HCCCC------------CEEEECCCCCEEEEEEECC
Q ss_conf 112-4--3333321-0475430551002388----8-89874--10466------------2000000432323241234
Q gi|255764505|r 214 GTL-F--VCASDVM-HSGDSIPLVKIGCPLI----D-AITIL--SEKRF------------GCVAVVDEGQKLKGIITEG 270 (341)
Q Consensus 214 g~~-L--l~V~DiM-~~~~~ip~V~~~~si~----e-al~~m--~~~~~------------g~v~Vvd~~~~liGIITdg 270 (341)
-+. . ..++-+= .+.+++-+.... .++ | ||+.+ +-.++ |==.++|++--++=.++.-
T Consensus 199 ~~~~~~~~~~~~l~~~~~~R~~~LGSG-gl~GlA~EsALK~LELTAGkv~a~~DSslGFRHGPK~~~~~~tlvVv~~S~D 277 (374)
T TIGR02815 199 VKEEQWDEAAKALAAAPFERIVYLGSG-GLQGLARESALKVLELTAGKVMAVYDSSLGFRHGPKSVVDDETLVVVYVSSD 277 (374)
T ss_pred HHHCCCHHHHHHHHCCCCCEEEEECCC-HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEECCEEEEEEEECC
T ss_conf 651114256778641876328986885-1368998876776643337278888668884058851360862799985268
Q ss_pred CH--------HHHHHCCCC-----CCCH--HHHCCCCCEEECCCC-CHHHHHHHH
Q ss_conf 03--------567617823-----3709--883488978977998-789999999
Q gi|255764505|r 271 DI--------FRNFHKDLN-----TLSV--EDVMIKNPKVILEDT-LLTVAMQLL 309 (341)
Q Consensus 271 Dl--------rR~l~~~~~-----~~~v--~~iMt~~p~~I~~d~-~i~eAl~lM 309 (341)
+. .+-|..|.. .+.. +++....+.+.-++. .+.|+...|
T Consensus 278 pYTRqYDLDLl~ELRrDn~A~~vvA~~a~~~~~~~~g~~~~lp~~~~~~D~~L~F 332 (374)
T TIGR02815 278 PYTRQYDLDLLAELRRDNQALRVVAISAESDELVAEGDAFLLPDLDEVEDVELAF 332 (374)
T ss_pred CCCCCCHHHHHHHHCCCCCEEEEEEEECCCHHHHCCCCEEECCCCCCHHHHHHHH
T ss_conf 9865004799999704896256888643751221378736568988732499998
No 158
>KOG0474 consensus
Probab=98.45 E-value=4.3e-07 Score=71.99 Aligned_cols=132 Identities=23% Similarity=0.339 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-----CEEEEEEECCCHHHHHHC
Q ss_conf 875311001111243333321047543055100238888987410466200000043-----232324123403567617
Q gi|255764505|r 204 FYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG-----QKLKGIITEGDIFRNFHK 278 (341)
Q Consensus 204 f~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-----~~liGIITdgDlrR~l~~ 278 (341)
|-.+||-=.-. -++++|+|.+ .+..++.-..+...+..+.......-||+|+. +++.|+|--..+...+.+
T Consensus 570 ~Le~~pe~~mr--~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~ 645 (762)
T KOG0474 570 FLEWEPEPYMR--NLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKK 645 (762)
T ss_pred CCCCCCCHHHH--HHHHHHHCCC--CEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 33578846765--3117664268--8588732210999999987347688752357887610236688899999999874
Q ss_pred C-----------------------------CC-----------CCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 8-----------------------------23-----------3709883488978977998789999999967995899
Q gi|255764505|r 279 D-----------------------------LN-----------TLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLM 318 (341)
Q Consensus 279 ~-----------------------------~~-----------~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~Lp 318 (341)
. +. -.....+|++.|.++.+++++..+..+|+.-.++|+.
T Consensus 646 ~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLl 725 (762)
T KOG0474 646 RVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLL 725 (762)
T ss_pred HHHHCCCCCCCCCCHHHCCCHHHHHHCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE
T ss_conf 45420576656760430378777644178556554166768643055334699996547431057899999973501589
Q ss_pred EEECCCEEEEEEEHHHHHHCC
Q ss_conf 980698489998588897436
Q gi|255764505|r 319 VVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 319 VVD~~~~lvGiIt~~DLlkag 339 (341)
||++.++.+|++|.+|+.+..
T Consensus 726 Vv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474 726 VVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred EECCCCCEEEEEEHHHHHHHH
T ss_conf 851778636677566434677
No 159
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.44 E-value=7.2e-07 Score=70.34 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=51.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+++|.+ ++.++++++++.+|+..|.+++++++||+|++|+++|++|..|+.|
T Consensus 58 ~~v~~iMt~--~~~ti~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dilr 112 (113)
T cd04615 58 AKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CCHHHHCCC--CCEEEECCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHC
T ss_conf 899992756--9789908993999999999749948999979993999999688326
No 160
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.44 E-value=2.5e-07 Score=73.69 Aligned_cols=56 Identities=32% Similarity=0.504 Sum_probs=52.2
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|.++|.+ +++++++++++.+|+..|.+++++++||+|++|+++|++|..|+.|+
T Consensus 67 ~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiiT~~DilkA 122 (122)
T cd04585 67 IKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred CCHHHHCCC--CCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 899995778--98899388669999999987598789999589989999987897469
No 161
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=7.1e-07 Score=70.38 Aligned_cols=55 Identities=31% Similarity=0.546 Sum_probs=50.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++.++++++++.+|+..|.++++..+||+| +|+++|++|..|+.|+
T Consensus 59 ~~V~~iM~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpV~d-~~~lvGiit~~Dllra 113 (113)
T cd04623 59 TPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVD-GGKLVGIVSIGDVVKA 113 (113)
T ss_pred CHHHHHCCC--EEEEEECCCCHHHHHHHHHHCCCEEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 401231211--028991699199999999976925999999-9999999997996469
No 162
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.43 E-value=8.4e-07 Score=69.87 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=50.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEEECCCHHHH
Q ss_conf 33333210475430551002388889874104662000000-43232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD-EGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd-~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +.+++.+++++.+|+..|.+++++++||+| ++|+++|++|..|+.++
T Consensus 58 ~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A 114 (114)
T cd04613 58 VVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred CEEEHHCCC--CCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 293120362--965991367889999999975975999998999989999998995359
No 163
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=2.2e-07 Score=74.11 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 243333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 216 LFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 216 ~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.-++|.|+|.+ ++|.+.+++++.|+++.|.+++.+.++|+|++|+++|+||++||.|+
T Consensus 54 ~~~~V~d~m~~--~v~~i~~~~~v~dalr~~~~~~~~~l~VVD~~grlvGiI~~rdlLr~ 111 (111)
T cd04603 54 ETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLRF 111 (111)
T ss_pred HCCCHHHHHCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHCC
T ss_conf 32438775156--77463899768999999874499889999389979999962551239
No 164
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=9e-07 Score=69.64 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=48.8
Q ss_pred HHHHHHHCCCCCCEEEEEHHH--HHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023--888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCP--LIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~s--i~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+++|.+ .+.++.++.. +.+|+..|.++++..+||+|++|+++|++|.+||.|
T Consensus 58 ~~v~~vMt~--~~itv~~~~~~~i~~a~~~M~~~~i~~lpVvd~~g~lvGiit~~Dilk 114 (115)
T cd04620 58 LPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CCHHHHCCC--CCEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHCCC
T ss_conf 898896368--967983899726999999987559528999957997999999256232
No 165
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.42 E-value=2.7e-07 Score=73.42 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=52.2
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+++|.+ ++.++++++++.+|+..|.+++++++||+|++++++|+||..|+.|+
T Consensus 58 ~~v~~iM~~--~~i~v~~~~~l~~a~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra 113 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred CCHHHHHCC--CCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 776786415--76799889987999999985796589999089989999997995477
No 166
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=2.8e-07 Score=73.29 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=50.2
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+++|.+ +..+++|++++.+|+..|.+++++++||+| +|+++|++|.+|+.|+
T Consensus 58 ~~V~~iMt~--~~~tv~~~~~i~~a~~~M~~~~i~~lpVvd-~g~lvGiit~~Di~rA 112 (112)
T cd04625 58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCHHHHEEC--CCEEECCCCHHHHHHHHHHHCCCEEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 708883348--977998999699999976866976999999-9999999997996359
No 167
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.40 E-value=4.9e-07 Score=71.53 Aligned_cols=59 Identities=32% Similarity=0.532 Sum_probs=55.5
Q ss_pred CCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 82337098834889789779987899999999679958999806984899985888974
Q gi|255764505|r 279 DLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 279 ~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
........++|+++.+++++++++.+|.++|.+++++.|||+|++.+++|+|+..|+++
T Consensus 241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~ 299 (382)
T COG3448 241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLK 299 (382)
T ss_pred HHCCCCHHHHCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHH
T ss_conf 85643088863745350177677579999999768650453266661003244887760
No 168
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=1.1e-06 Score=68.91 Aligned_cols=55 Identities=31% Similarity=0.507 Sum_probs=50.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
++|+|+|.+ +++++.+++++.+|+..|.+++++++||+|+ |+++||||..|+.|+
T Consensus 67 ~~V~~iM~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~~lvGIIT~~Dilry 121 (121)
T cd04633 67 LPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred CEEECCCCC--CCEEEECCCCHHHHHHHHHHHCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 685533437--9889909898999999989719859999989-999999983460281
No 169
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=1.1e-06 Score=68.90 Aligned_cols=56 Identities=38% Similarity=0.609 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 4333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 217 FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
..+|+|+|.+ ++.++++++++.+|++.|.+++++++||+|++|+++|++|.+|+.|
T Consensus 66 ~~~v~~im~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~~~lvGiiT~~Dilk 121 (122)
T cd04803 66 DVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHEEE
T ss_conf 8899996689--9869989998999999998568509999947998999999515564
No 170
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.39 E-value=1.3e-06 Score=68.55 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=51.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+++++|.+ +..++++++++.+|+..|.+++++++||+|++|+++|++|..|+.|+
T Consensus 53 ~~v~~iM~~--~~~~v~~~~~~~~~~~~m~~~~~~~lPVVde~~~lvGiIT~~Dil~A 108 (108)
T cd04596 53 TTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLKA 108 (108)
T ss_pred CCHHHHEEC--CCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 726785004--76205999889999999998498778999169959999997996319
No 171
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=98.38 E-value=6.2e-06 Score=63.53 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHH-HHHH
Q ss_conf 9999999982799599993381379999999998750-8861101233023202301210470789836878078-8766
Q gi|255764505|r 53 FHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDE-LKAI 130 (341)
Q Consensus 53 ~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e-~~~~ 130 (341)
..+..+.+.+++ +++|.|-|-+.-+|+..+-+|.-+ .+|+..++..|..||=+-++.++..+|++...|.+.+ ..++
T Consensus 3 ~~~~a~~~~~~~-~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~ 81 (153)
T cd05009 3 IKELAEKLKEAK-SFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred HHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 899999984788-0899948978899999999999998998326768887137399866898679981443788889999
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 666320456279984478895452145337688615543247521789999999999999999985033878887
Q gi|255764505|r 131 LYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFY 205 (341)
Q Consensus 131 ~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~ 205 (341)
++.++++|++++.|+..... ...+|..+.+|... +..+........+.||-.+...||++++...
T Consensus 82 ~~~~~~~~~~v~~i~~~~~~--~~~~~~~~~~p~~~--------~~~~~~~~~i~~Q~la~~~a~~~G~~pD~Pr 146 (153)
T cd05009 82 IKEVKARGAKVIVITDDGDA--KDLADVVIRVPATV--------EELSPLLYIVPLQLLAYHLAVARGIDPDKPR 146 (153)
T ss_pred HHHHHHCCCEEEEEECCCCC--CCCCCEEEECCCCC--------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999659849999778643--45576168789972--------7889999999999999999998097979999
No 172
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=1.1e-06 Score=69.00 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=51.2
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ +++++++++++.+|+..|.++++..++|+|++|+++|++|..|+.|
T Consensus 57 ~~v~~~m~~--~~~tv~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~lvGiit~~Dilk 111 (112)
T cd04624 57 TPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CCEEEEECC--CCEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 420456516--7167879998999999999749839989989999999998077256
No 173
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.35 E-value=2.9e-07 Score=73.21 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=51.6
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +..++++++++.+|+..|.+++++.+||+|++|+++|++|..||.|+
T Consensus 58 ~~v~~iMt~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd~~~~~vGiit~~Dil~A 113 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113 (113)
T ss_pred CEEEEEECC--CCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 898866616--84699079999999999987794199999269989999984885278
No 174
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.35 E-value=9.3e-07 Score=69.54 Aligned_cols=55 Identities=11% Similarity=0.334 Sum_probs=45.5
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 33332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
+=+|+... .++-++++++++.||++.|.+++++.+||+|++++++|++|..||.|
T Consensus 41 T~rDli~~-~~~itv~~~~~v~eaa~lM~~~~I~~LPVvd~~~~lvGiit~~Dllk 95 (96)
T cd04614 41 TERDLIAK-SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ECHHHCCC-CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHCCC
T ss_conf 88888257-78879799890999999999859988628989991999988798048
No 175
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=3.6e-07 Score=72.57 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=52.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++++|++++++.+|++.|.+++++++||+|++|+++|+||..|+.|+
T Consensus 70 ~~v~~im~~--~v~tv~~~~~l~~a~~~m~~~~i~~lpVvd~~g~~~GiIt~~DilrA 125 (125)
T cd04631 70 EPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 899995668--98899799998999999986395099999589939999988997369
No 176
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=1.6e-06 Score=67.84 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=48.5
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 33332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.|.|+|.+ ++.++++++++.+|+..|.+++++++||+| +|+++|++|.+||.|
T Consensus 52 ~v~~iMt~--~~itv~~~~~l~~a~~~M~~~~i~~lpVvd-~g~lvGiiT~~Divr 104 (105)
T cd04599 52 LVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLR-ERKLVGIITKGTIAL 104 (105)
T ss_pred CHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf 96885027--989997949199999977985997999998-999999999458615
No 177
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.33 E-value=1.9e-06 Score=67.28 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=50.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
..|+++|.+ ++++|.+++++.+|++.|.+++++.+||+|++|+++|+||..|+..
T Consensus 56 ~~V~~vM~~--~v~tv~~~~~l~~~~~~m~~~~~~~lpVVd~~g~lvGivT~~Di~E 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 705763546--9879989994999999999589988989957992999999788544
No 178
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.33 E-value=2.1e-06 Score=67.01 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=51.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+++++|.+......++++.++.+|++.|.+++++++||+|++|+|+|+||.+|+.|.
T Consensus 57 ~~v~~iMt~~~~~i~~~~~~~l~ea~~~m~~~~i~~LPVVd~~g~LvGiIT~~Di~k~ 114 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKKN 114 (114)
T ss_pred CCCCCEEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHCCC
T ss_conf 6563516527668994798789999999997496678199789969999992440369
No 179
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.32 E-value=2.2e-06 Score=66.80 Aligned_cols=56 Identities=34% Similarity=0.446 Sum_probs=49.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+++|+|.+. .+.++.+++++.+|++.|.+++++++||+|++|+++|++|-.|+.|
T Consensus 54 ~~v~~iM~~~-~~~~~~~~~~~~~~~~~m~~~~i~~lpVvd~~~~lvGiIt~~Dilk 109 (110)
T cd04601 54 KPVSEVMTPE-NLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCEEEEECC-CEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHCC
T ss_conf 8603577057-5087047687999999998668519999988999999999598437
No 180
>pfam00571 CBS CBS domain. CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP.
Probab=98.32 E-value=1.8e-06 Score=67.48 Aligned_cols=55 Identities=42% Similarity=0.536 Sum_probs=50.6
Q ss_pred HHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf 9883488978977998789999999967995899980698489998588897436
Q gi|255764505|r 285 VEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 285 v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
++++|++++.++++++++.+|++.|.+++.+++||+|++++++|+|+..|++++-
T Consensus 1 v~~im~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvit~~dl~~~~ 55 (57)
T pfam00571 1 VKDIMTPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRAL 55 (57)
T ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHH
T ss_conf 9422779998997909099999999853995799992799499999789999986
No 181
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.32 E-value=5e-07 Score=71.48 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=52.0
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++.++++++++.+|++.|.++++++++|+|++|+++||+|..|+.|+
T Consensus 55 ~~V~~~M~~--~~~tv~~d~~l~~~~~~m~~~~v~~l~Vvd~~~~lvGIiT~~Dllka 110 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILRS 110 (110)
T ss_pred CHHHHHCCC--CCCEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 803452048--97298589969999999987799789999669999999982483468
No 182
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=2.3e-06 Score=66.65 Aligned_cols=55 Identities=29% Similarity=0.264 Sum_probs=48.8
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
..+.++|.+ ...+|+|++++.|++..|.++++++++|+|++|+++||||.+|+.|
T Consensus 71 ~~~~~~~~~--~~itv~~~~~l~~~~~~m~~~~i~~lpVVD~~~~lvGIIs~~Dil~ 125 (126)
T cd04642 71 TDSDGVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CEEEECCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 234202447--9989999693999999999869749999989995999999289421
No 183
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.31 E-value=2.6e-06 Score=66.30 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=81.2
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCC-CCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHH
Q ss_conf 4305510023888898741046620000004-323232412340356761782337098834889789779987899999
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDE-GQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQ 307 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~-~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~ 307 (341)
++...+-+.+++.|+..|.++++..+++-|. .++++|++|-.|..+.+. .++++|+.++.||.+
T Consensus 2 kliV~D~~l~vk~Af~al~~ngi~~aplWds~~~~fvGmLt~~DfI~il~---------------lv~i~P~~sL~da~~ 66 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR---------------LVSIHPERSLFDAAL 66 (98)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEHHHHHHHHH---------------HEECCCCCHHHHHHH
T ss_conf 09999489758999999998692699987288767888864799998876---------------244487612999999
Q ss_pred HHHHCCCCEEEEEECC-CEEEEEEEHHHHHH
Q ss_conf 9996799589998069-84899985888974
Q gi|255764505|r 308 LLRQHNISVLMVVDDC-QKAIGIVHFLDLLR 337 (341)
Q Consensus 308 lM~~~kI~~LpVVD~~-~~lvGiIt~~DLlk 337 (341)
.|.+++++++||+|.+ |...-+++.+.+++
T Consensus 67 ~l~~~~ihrlPvid~~~~~~~~ilt~~~il~ 97 (98)
T cd04618 67 LLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEEEEEHEEC
T ss_conf 9986787505216479996589996302015
No 184
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=2.6e-06 Score=66.24 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 2433333210475430551002388889874104662000000432323241234035
Q gi|255764505|r 216 LFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 216 ~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
...+..++|. +++.+|++++++.||++.|.+++++++||+|++|+++|++|.+|+|
T Consensus 66 ~~~~~~~~~~--~~viti~~d~~l~~A~~lM~~~~i~~lpVVD~~g~lvGiiS~~Dlr 121 (123)
T cd04627 66 IPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCHHHHHCCC--CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHEE
T ss_conf 2002332376--7717989999599999999980988786985999699998925422
No 185
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.29 E-value=2.8e-06 Score=66.09 Aligned_cols=54 Identities=31% Similarity=0.536 Sum_probs=45.9
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +++++++++++.++...|.++.. .+|++++|+++||+|..|+.|+
T Consensus 57 ~~v~~iM~~--~~~~v~~~~~l~~~~~~~~~~~~--~~vV~~~g~lvGIvT~~Dil~~ 110 (110)
T cd04609 57 LPVREVMGE--PLPTVDPDAPIEELSELLDRGNV--AVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred CEEEEEEEC--CCEEECCCCCHHHHHHHHHHCCC--CEEEECCCEEEEEEEHHHHHCC
T ss_conf 769845675--94597898949999998876798--2499619999999983685294
No 186
>KOG1764 consensus
Probab=98.28 E-value=2.1e-06 Score=66.95 Aligned_cols=160 Identities=23% Similarity=0.250 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCEEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 89999999999999999985033878887531100111124333332--1047543055100238888987410466200
Q gi|255764505|r 177 TSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDV--MHSGDSIPLVKIGCPLIDAITILSEKRFGCV 254 (341)
Q Consensus 177 ~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~Di--M~~~~~ip~V~~~~si~eal~~m~~~~~g~v 254 (341)
.....++...|.+.+.++..+.....++...=....+++.- .+..+ +........+.|..++.++...+.++++..+
T Consensus 110 ~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rv 188 (381)
T KOG1764 110 QQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRR-EVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRV 188 (381)
T ss_pred CEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCCEEE
T ss_conf 20454343888999998640467756777653022014551-24432104446774130786889997764235772475
Q ss_pred EECC-CCCEEEEEEECCCHHHHHHCC--------CCCCCHHHH---CCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 0000-432323241234035676178--------233709883---4889789779987899999999679958999806
Q gi|255764505|r 255 AVVD-EGQKLKGIITEGDIFRNFHKD--------LNTLSVEDV---MIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDD 322 (341)
Q Consensus 255 ~Vvd-~~~~liGIITdgDlrR~l~~~--------~~~~~v~~i---Mt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~ 322 (341)
+|.| +.+++..++|.+-+.+.+... +...++.|. +..+..++.+++++.+|+++|.++++..+||||+
T Consensus 189 pv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764 189 PVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEECC
T ss_conf 23365655421112099999999851456442245518876640477877777517870899999998704574434757
Q ss_pred CCEEEEEEEHHHHHH
Q ss_conf 984899985888974
Q gi|255764505|r 323 CQKAIGIVHFLDLLR 337 (341)
Q Consensus 323 ~~~lvGiIt~~DLlk 337 (341)
.|+.+|.++..|...
T Consensus 269 ~g~~v~~~s~~Dv~~ 283 (381)
T KOG1764 269 NGKKVGNYSRFDVIH 283 (381)
T ss_pred CCCEECCEEEEHHHH
T ss_conf 785532156200121
No 187
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.28 E-value=7.8e-07 Score=70.09 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=49.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ ++.++++++++.+|++.|.+++++++||+| +|+++|++|..|+.+
T Consensus 58 ~~v~~iM~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiIt~~Dil~ 111 (112)
T cd04802 58 VPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVD-DDELVGIVTTTDIVM 111 (112)
T ss_pred CCHHHHHCC--CCEEECCCCHHHHHHHHHHHHCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf 899997234--855994798699999987871985899998-999999998067105
No 188
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.28 E-value=4.8e-07 Score=71.65 Aligned_cols=56 Identities=30% Similarity=0.471 Sum_probs=51.6
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.++.++|.+ +++++++++++.+|+..|.++++++++|+|++|+++|++|..|+.|+
T Consensus 56 ~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GiiT~~DilrA 111 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred CEEEEEECC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 569999707--96052999979999999997698199999689989999986886349
No 189
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=2.8e-06 Score=66.06 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=50.1
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 33333210475430551002388889874104662000000432323241234035
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
.+|+++|.+ +..++.++.++.+|+..|.+++++++||+|++++++|++|..|+.
T Consensus 58 ~~v~~im~~--~~~~i~~~~~~~~a~~~m~~~~i~~lPVvd~~~~lvGiit~~Dll 111 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCHHHHHCC--EEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHH
T ss_conf 615675212--129998799899999999877974999997899499999979930
No 190
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.26 E-value=3.7e-06 Score=65.13 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=49.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|.++|.+ +++++++++++.+|+..|.+++++.+||+| +|+++|++|.+|+.|
T Consensus 56 ~~v~~iM~~--~~~tv~~~~~i~~a~~~m~~~~~~~lpVvd-~g~lvGiit~~Dilk 109 (110)
T cd04595 56 APVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCCEEEEEC--CEEEECCCCCHHHHHHHHHHCCCEEEEEEE-CCEEEEEEEHHHEEC
T ss_conf 812103253--668866999399999988974913999998-999999998415615
No 191
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.26 E-value=1.6e-06 Score=67.79 Aligned_cols=54 Identities=35% Similarity=0.482 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHH
Q ss_conf 33333210475430551002388889874104662000000432323241234035676
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF 276 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l 276 (341)
++|+++| ++..|.|+++.++...-..+..+. ++.|+ ++|+++||||..|+.+.+
T Consensus 130 ~~vr~vM--~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~ 183 (187)
T COG3620 130 LRVREVM--GEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLL 183 (187)
T ss_pred HHHHHHH--CCCCCCCCCCCCHHHHHHHHHHCC--EEEEE-ECCCEEEEEEHHHHHHHH
T ss_conf 2189885--588876799998799999984198--38998-689368887599999987
No 192
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=3.8e-06 Score=65.12 Aligned_cols=53 Identities=26% Similarity=0.432 Sum_probs=48.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 33333210475430551002388889874104662000000432323241234035
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
.+|+++|.+ ++.+++|+.++.+|+..|.+++++++||+|+ ++++|++|..||.
T Consensus 57 ~~V~~iMt~--~~itv~~~~~~~~a~~~M~~~~i~~LPVvd~-~klvGiit~~Dil 109 (111)
T cd04626 57 KKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDIL 109 (111)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHHCCCEEEEEEC-CEEEEEEEHHHHC
T ss_conf 888996069--9879999793999999999809988999999-9999999969814
No 193
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=98.24 E-value=6.1e-06 Score=63.61 Aligned_cols=116 Identities=27% Similarity=0.297 Sum_probs=93.2
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC--------CCCEEEEEEECCCHHHHHHC-C-CCCCCHH-
Q ss_conf 33333210475430551002388889874104662000000--------43232324123403567617-8-2337098-
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD--------EGQKLKGIITEGDIFRNFHK-D-LNTLSVE- 286 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd--------~~~~liGIITdgDlrR~l~~-~-~~~~~v~- 286 (341)
.+|+|+-.+ .+-.+.|+.++.+|++++.++++.-+||++ +.+++.|.++.+.+.+.+.. . ..+-+|+
T Consensus 366 ~~v~~l~L~--~~v~~~~t~tv~~ai~iLre~GfdQ~PVv~pga~~P~veag~v~G~v~l~~lL~~l~~~~a~~~D~v~G 443 (527)
T TIGR01137 366 ARVKDLHLP--ALVTVHPTETVGDAIEILREYGFDQLPVVKPGAAEPDVEAGKVLGSVTLRELLSALFAKKAKLEDAVSG 443 (527)
T ss_pred CEEECCCCC--CCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCC
T ss_conf 364156688--734546764089999999974873076207788889723534788742677899998424675544343
Q ss_pred -----HHCC---------------CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCE------------EEEEEEHHH
Q ss_conf -----8348---------------89789779987899999999679958999806984------------899985888
Q gi|255764505|r 287 -----DVMI---------------KNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQK------------AIGIVHFLD 334 (341)
Q Consensus 287 -----~iMt---------------~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~------------lvGiIt~~D 334 (341)
..|. ++.+.|...+++.++-+.|+.+. .+.|+++... ++||||..|
T Consensus 444 kyldfk~~~~Fndvssynenk~~~~~~~~i~~~~~l~~L~~~le~~~--~a~V~~e~~pyhstGkssqrq~~~gvVT~~D 521 (527)
T TIGR01137 444 KYLDFKVMSRFNDVSSYNENKSKKKKFIQIGEGEKLADLSKFLEKNS--SAIVVEEGKPYHSTGKSSQRQMVIGVVTKID 521 (527)
T ss_pred CCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCEEEEEEEEHHH
T ss_conf 00034445321010001010246767654467751899999851696--1899707823212565424327898644122
Q ss_pred HHH
Q ss_conf 974
Q gi|255764505|r 335 LLR 337 (341)
Q Consensus 335 Llk 337 (341)
||.
T Consensus 522 LL~ 524 (527)
T TIGR01137 522 LLS 524 (527)
T ss_pred HHH
T ss_conf 443
No 194
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=1.1e-06 Score=68.92 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=50.4
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ ++.++++++++.+|+..|.+++++++||++ +|+++|++|.+|+.|+
T Consensus 60 ~~V~~vMt~--~v~tv~~d~~~~~a~~~m~~~~i~~lpVvd-~~~lvGiit~~Dil~A 114 (114)
T cd04630 60 VNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVE-NNELIGIISLTDIFLA 114 (114)
T ss_pred CCHHHHCCC--CEEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 498682703--549999949499999999977972999999-9999999976896479
No 195
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.23 E-value=1.1e-06 Score=68.89 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=51.5
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +++++++++++.+|+..|.+++++++||+|++|+++|++|..|+.|.
T Consensus 56 ~~v~~iM~~--~~~tv~~~~~~~~a~~~m~~~~i~~lpVvd~~~~~vGiiT~~Dilr~ 111 (111)
T cd04611 56 TPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQN 111 (111)
T ss_pred CCHHHHHCC--CCEEEECCCCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 888997106--83399789999999999997187399999469989999985684278
No 196
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.23 E-value=2.2e-06 Score=66.76 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=48.8
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+|+|+|.+ ++.++.+++++.+|+..|.+++++++||+| +++++|++|..||.+
T Consensus 57 ~~V~~vms~--~~~ti~~~~~~~~a~~~M~~~~i~~lpV~d-~~~~vGivt~~Dil~ 110 (111)
T cd04589 57 TPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCEEEEEEE-CCEEEEEEEHHHHHC
T ss_conf 899992879--998999979299999999987980889998-999999999688228
No 197
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.22 E-value=1.2e-06 Score=68.66 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=71.7
Q ss_pred ECCCCCHHHHCCCCE------EEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 447889545214533------7688615-543247521789999999999999999985033878887531100111124
Q gi|255764505|r 145 TSENKSVVACHADIV------LTLPKEP-ESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLF 217 (341)
Q Consensus 145 T~~~~S~la~~ad~~------l~~~~~~-Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L 217 (341)
|=.++-+|++..+.. -..|+.. +....|+... .|...+ |-. ....
T Consensus 5 tv~~~~tl~e~~~~~~~~~~~~~~pVvd~~g~l~Givt~---------~dl~~~-----------------~~~--~~~~ 56 (114)
T cd04801 5 TVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISL---------ADLRAI-----------------PTS--QWAQ 56 (114)
T ss_pred EECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEH---------HHHHHH-----------------HHH--CCCC
T ss_conf 849999599999999850796689998789979999999---------998754-----------------540--2568
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.++.++|.+..+.+++.+++++.+|+..|.+++++.+||+|++|+++|++|..|+.|
T Consensus 57 ~~v~~v~~~~~~~~~v~~~~~l~~al~~m~~~~~~~LpVVd~~g~lvGiit~~Dilr 113 (114)
T cd04801 57 TTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred CCHHHHCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHC
T ss_conf 847782102778758999997999999999769867889947990999999788436
No 198
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=98.22 E-value=3e-06 Score=65.85 Aligned_cols=149 Identities=23% Similarity=0.278 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCE-EEEEHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999999999999985033--878887531100111124--33333210475430-551002388889874104662000
Q gi|255764505|r 181 MQLAIGDALAIALLESRNF--SENDFYVLHPGGKLGTLF--VCASDVMHSGDSIP-LVKIGCPLIDAITILSEKRFGCVA 255 (341)
Q Consensus 181 ~~l~~~Dalav~l~~~~~~--t~~df~~~HPgG~lg~~L--l~V~DiM~~~~~ip-~V~~~~si~eal~~m~~~~~g~v~ 255 (341)
.+-+-|--+|-++.++-|+ -++|. |--..-... .+-+|... +.| ++.|+.++.++...+.+...+..+
T Consensus 51 mta~aGrrmaet~arrGG~~~~Pqd~----P~~~~~~~~~~vk~~~~vl---dtP~~~~P~~~v~~a~~l~~krah~~~~ 123 (476)
T TIGR01303 51 MTAVAGRRMAETVARRGGLVILPQDV----PIEVVKETVAFVKSRDLVL---DTPITLAPHDTVADALALIHKRAHGAAV 123 (476)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCC----CHHHHHHHHHHHHHCCEEE---CCCEEECCCHHHHHHHHHHHHHCCCEEE
T ss_conf 34542135777775148868962667----7789999998764102022---3741654623389999987531143178
Q ss_pred ECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHH
Q ss_conf 00043232324123403567617823370988348897897799878999999996799589998069848999858889
Q gi|255764505|r 256 VVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDL 335 (341)
Q Consensus 256 Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DL 335 (341)
|++++++++|+++|.|+. .-+ .-+.+.++|.++.++++.+..-.+++.++.+......|+++.+|.+.|+++..--
T Consensus 124 v~~~~~~P~G~v~~~~~~---G~d-~ft~~~~~~~~~~~~~~~~~~P~~~f~~l~~~~~~~a~~~~~dG~l~G~l~r~Ga 199 (476)
T TIGR01303 124 VVEEDGKPVGVVTDKDLE---GVD-RFTQVEEVMSTDLVTLPADLEPREAFDLLEEASRKLAPVVDADGSLAGILTRTGA 199 (476)
T ss_pred EEECCCCEEEEEECCCCC---CHH-HHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 981698126788515310---004-5678887775432020367888899999874101201111057725554411430
Q ss_pred HHCCC
Q ss_conf 74368
Q gi|255764505|r 336 LRFGI 340 (341)
Q Consensus 336 lkagi 340 (341)
+|+++
T Consensus 200 ~ra~~ 204 (476)
T TIGR01303 200 LRATL 204 (476)
T ss_pred CEEEC
T ss_conf 00000
No 199
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.19 E-value=7.7e-06 Score=62.85 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 2337098834889789779987899999999679958999806984899985888974
Q gi|255764505|r 280 LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 280 ~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
..+.+++|+|++++.++++++++.|+.+.|.+.+.+.+||||++|+++|+|+.+|+.+
T Consensus 453 l~~~~v~dvm~~~~~~v~~~~~l~e~~~~~~~~~~~~~~Vvd~~g~l~Giv~l~dl~~ 510 (583)
T PRK01862 453 LRTTQMRELIQPAQTVVPLTASVADMTRVFLEYPVKYLYVTDDDGRFRGAVALKDITS 510 (583)
T ss_pred HHHCCHHHHCCCCCCEECCCCCHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHH
T ss_conf 8508099963878823499998999999998479707999889997999978999887
No 200
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.17 E-value=1.5e-06 Score=67.95 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=51.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+++|.+ +..+++++.++.+|+..|.++++.++||+|++++++|++|..|+.|+
T Consensus 59 ~~v~~iM~~--~~~tv~~~~~i~~a~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA 114 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred CCHHHHHCC--CCEEEECCCCHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 797474356--75899389886999999987795799999899989999988995469
No 201
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.17 E-value=1.7e-06 Score=67.62 Aligned_cols=47 Identities=32% Similarity=0.479 Sum_probs=44.4
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHH
Q ss_conf 30551002388889874104662000000432323241234035676
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF 276 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l 276 (341)
+.++.|++++.||+..|.+++++.+||+|++|+++||+|.+|+.|++
T Consensus 2 ~itv~~~~~v~~a~~~m~~~~i~~lPVVd~~~~lvGiit~~Dil~~l 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHH
T ss_conf 86999879299999999980998576998999199998879999864
No 202
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=98.16 E-value=4.2e-05 Score=57.47 Aligned_cols=106 Identities=25% Similarity=0.235 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH---CCCCCCCCCCCCHHH--HCCCEEECC-CEEEEEECCCCC
Q ss_conf 66999999998279959999338137999999999875---088611012330232--023012104-707898368780
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAS---TGTPSFFVHAAEASH--GDLGMITRD-DLIIVLSWSGSS 124 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s---~G~~a~~~~~~ea~H--gdlg~i~~~-Dv~i~iS~SG~t 124 (341)
.++.+++..+.+-+ .|+.+|+|+|.+=++-+..-|.. -+.+-+|++-.|..+ --+..+.++ .++|.+|+||.|
T Consensus 46 ~~~~~~~~~~~~~~-~vV~IGIGGS~LG~~ai~~aL~~~~~~~~~i~F~~N~Dp~~~~~~l~~l~~~~TlfiViSKSgtT 124 (409)
T PRK03868 46 EESLKYLNDKQAIK-NIVVIGIGGSSLGVKAIYSMLKNKKQLKRELHFLDNTDPISINKTLKKINLEETLFIVISKSGTT 124 (409)
T ss_pred HHHHHHHHHHCCCC-EEEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 99999986452498-79998255288999999998412045897499984889899999996089351799998599983
Q ss_pred HHHHHHHHHHHCC-------CCCEEEEECCCCCHHHHCCCC
Q ss_conf 7887666663204-------562799844788954521453
Q gi|255764505|r 125 DELKAILYYARRF-------SIPLIAITSENKSVVACHADI 158 (341)
Q Consensus 125 ~e~~~~~~~~k~~-------~~~iI~iT~~~~S~la~~ad~ 158 (341)
.|++...+.+.++ .-..++||. ++|+|.+.++-
T Consensus 125 ~ET~~~~~~~~~~~~~~~~~~~~~i~iTd-~~s~L~~~a~~ 164 (409)
T PRK03868 125 IETISIFKYILEHFKLDKLELKNFLVITD-PDSPLEQFAKE 164 (409)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEC-CCHHHHHHHHH
T ss_conf 89999999999972455330025799936-84166654442
No 203
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.16 E-value=5.9e-06 Score=63.67 Aligned_cols=55 Identities=24% Similarity=0.392 Sum_probs=49.8
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
.+|+|+|.+ +++++++++++.+|+..|.+++++++||++ +++++|++|.+|+.|.
T Consensus 57 ~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~i~~lpVvd-~~~lvGiit~~Dilk~ 111 (111)
T cd04800 57 TPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVD-DGRLVGVISATDLLRL 111 (111)
T ss_pred CCHHHHCCC--CCEEEECCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHEECC
T ss_conf 658885126--817998899199999999853995899998-9999999985457363
No 204
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.15 E-value=7.7e-06 Score=62.83 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=44.1
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 97897799878999999996799589998069848999858889743
Q gi|255764505|r 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 292 ~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
..++++|++++.||+++|.+++++.+||||++++++||||..||.|.
T Consensus 2 ~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~~~L~GIvt~gDi~R~ 48 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRF 48 (133)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 45998999859999999998188657998389978999787999999
No 205
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=98.10 E-value=2.6e-06 Score=66.28 Aligned_cols=182 Identities=21% Similarity=0.286 Sum_probs=117.2
Q ss_pred HHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE----EECCCCCHHHHCCCCEE-----EEEEECCCCCC
Q ss_conf 2320230121047078983687807887666663204562799----84478895452145337-----68861554324
Q gi|255764505|r 101 ASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIA----ITSENKSVVACHADIVL-----TLPKEPESCPH 171 (341)
Q Consensus 101 a~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~----iT~~~~S~la~~ad~~l-----~~~~~~Ea~~~ 171 (341)
|.-|.+|.|..|= ..++-++.++..|+..-.+|. .|-.|+.++...-.+.= -+||.++....
T Consensus 55 A~~GGiGVIH~N~---------~~E~Qae~V~~VKr~e~g~i~redp~t~~P~~tv~~~~~l~~~~gisG~PVv~~G~~~ 125 (476)
T TIGR01302 55 AREGGIGVIHRNM---------SIERQAEEVKRVKRAENGIISREDPVTISPETTVEDVLELMERKGISGIPVVEDGKDG 125 (476)
T ss_pred HHCCCCEEEECCC---------CHHHHHHHHHHHHHHCCCEEEECCCEEECCCCHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 8549947994479---------9899999988752320660651488684798518999973221576545788368898
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCC-CCH---HH--HHHHHHHHHHHHHHHH--HHHHHCCCCCCEEEEEHHHHHHHH
Q ss_conf 752178999999999999999998503-387---88--8753110011112433--333210475430551002388889
Q gi|255764505|r 172 GLAPTTSAIMQLAIGDALAIALLESRN-FSE---ND--FYVLHPGGKLGTLFVC--ASDVMHSGDSIPLVKIGCPLIDAI 243 (341)
Q Consensus 172 ~~aPt~Stt~~l~~~Dalav~l~~~~~-~t~---~d--f~~~HPgG~lg~~Ll~--V~DiM~~~~~ip~V~~~~si~eal 243 (341)
+ |-+- +..| +|. .| |.++ .-.+ |+|+|.+++++-+++++-.+.||.
T Consensus 126 g--~ktG----------------KLvGIiT~sqWrD~~f~~~--------~~~~daV~~~MT~~~~~iT~~e~i~~e~A~ 179 (476)
T TIGR01302 126 G--PKTG----------------KLVGIITKSQWRDVRFVKD--------KGKKDAVSEVMTPREELITVPEGIDLEEAL 179 (476)
T ss_pred C--CCEE----------------EEEEEEECCCEEECCCCCC--------CCCCCCEEECCCCCCCCEEECCCCCHHHHH
T ss_conf 9--7100----------------6999983772254110104--------688330101120376434841677789999
Q ss_pred HHHHCCCCCEEEECCCCCEEEEEEECCCHHHHH-HCCCCCC---CHHHHCCCCCEEECC-CCCHHHHHHHHHHCCCCEEE
Q ss_conf 874104662000000432323241234035676-1782337---098834889789779-98789999999967995899
Q gi|255764505|r 244 TILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF-HKDLNTL---SVEDVMIKNPKVILE-DTLLTVAMQLLRQHNISVLM 318 (341)
Q Consensus 244 ~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l-~~~~~~~---~v~~iMt~~p~~I~~-d~~i~eAl~lM~~~kI~~Lp 318 (341)
.+|.++|.+-+||+|++++|+|+||-.|+.|.. ..+-... +=+++|---- |.+ +..... +..+.+-.++.|
T Consensus 180 ~~L~~~r~ekLpvVd~~~~lVgLiT~~Di~~~~~~P~A~kd~vG~~GrL~VgAA--vg~r~~D~~R-~~~L~~AGvDv~- 255 (476)
T TIGR01302 180 KVLHKHRIEKLPVVDKDGELVGLITVKDIVKRREFPHASKDTVGENGRLIVGAA--VGTREDDLER-AEALVEAGVDVI- 255 (476)
T ss_pred HHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEEE--ECCCCCCHHH-HHHHHHCCCCEE-
T ss_conf 998860865047882789889998644788986388877887488860899988--4689861899-999996596589-
Q ss_pred EEE
Q ss_conf 980
Q gi|255764505|r 319 VVD 321 (341)
Q Consensus 319 VVD 321 (341)
|+|
T Consensus 256 viD 258 (476)
T TIGR01302 256 VID 258 (476)
T ss_pred EEE
T ss_conf 981
No 206
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.09 E-value=2.5e-06 Score=66.44 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=50.5
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
.+++++|.+ +.+++++++++.+|+..|.++++.++||+|++|+++|+||-.|+..
T Consensus 53 ~~v~~iM~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~~~lvGiIt~~Di~~ 107 (109)
T cd04606 53 TPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred CCHHHHHCC--CEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHH
T ss_conf 716663002--1363379998999999999852760468988997999999689684
No 207
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=97.98 E-value=4.8e-05 Score=57.10 Aligned_cols=108 Identities=25% Similarity=0.239 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-----------HCCCCCCCCCCCCHHH--HCCCEEECC-CEE
Q ss_conf 36699999999827995999933813799999999987-----------5088611012330232--023012104-707
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLA-----------STGTPSFFVHAAEASH--GDLGMITRD-DLI 115 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~-----------s~G~~a~~~~~~ea~H--gdlg~i~~~-Dv~ 115 (341)
.+.+.++.+.+.+.+ .|++.|+|+|.+=++-+...|. +-+..-+|++-.|..+ .=+..+.+. -++
T Consensus 59 ~~~~~~~~~~~k~~~-~vV~IGIGGS~LG~~a~~~aL~~~~~n~~~~~~~~~~~i~f~~NvDp~~l~~~l~~ld~~~Tlf 137 (454)
T PRK00973 59 LDSYLELKEWIKNFE-NVVVLGIGGSALGNLALHTALLPLNYNELSKEERNGYRIFVLDNVDPEKTASILDVIDPKKTLF 137 (454)
T ss_pred HHHHHHHHHHHCCCC-EEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEE
T ss_conf 999999999747898-7999543536789999999950011231001116897599980899899999997479330799
Q ss_pred EEEECCCCCHHHHHHHHHHHCC----C----CCEEEEECCCCCHHHHCCCC
Q ss_conf 8983687807887666663204----5----62799844788954521453
Q gi|255764505|r 116 IVLSWSGSSDELKAILYYARRF----S----IPLIAITSENKSVVACHADI 158 (341)
Q Consensus 116 i~iS~SG~t~e~~~~~~~~k~~----~----~~iI~iT~~~~S~la~~ad~ 158 (341)
+.+|+||.|.|++.....+|+. | -.++++|.+..++|...++-
T Consensus 138 iViSKSgtT~ETl~n~~~~r~~l~~~g~~~~~h~vaiT~~~~~~l~~~a~~ 188 (454)
T PRK00973 138 NVISKSGNTAETLANYLIVRGLLEKYGLDPKKHLVFTTDPEKGELKKIAEE 188 (454)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCCCCHHHHHHHH
T ss_conf 998489796899999999999999649567656577526751156777887
No 208
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=97.97 E-value=0.0011 Score=47.13 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHCCCEEEC--CCEEEEEECCCCC-H
Q ss_conf 36699999999827995999933813799999999987508-861101233023202301210--4707898368780-7
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTG-TPSFFVHAAEASHGDLGMITR--DDLIIVLSWSGSS-D 125 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G-~~a~~~~~~ea~Hgdlg~i~~--~Dv~i~iS~SG~t-~ 125 (341)
.+.+.+.++.+.+++ .++|.|-|-+.-+|..-|-+|.-+- ++|--+.++|.=||-+.+|.+ +-.||++.-.++. .
T Consensus 534 ~~~i~~iA~~~~~~~-~~~fLGRG~~ypiAlEGALKLKEISYIHAEgy~AGElKHGPiALId~e~~~PVi~i~~~d~~~~ 612 (691)
T PTZ00295 534 EEQCKQIAEKIKNKN-SIFVLGKGLSYPIALEGALKIKEITYIHCEGYSGGALKHGPFALIGGEDNTPVILLILNDSNKN 612 (691)
T ss_pred HHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCEEEEEECCCCCHH
T ss_conf 789999999985345-5899836887599999999999998885426633563678667621588970899943985088
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 887666663204562799844788954521453376886155432475217899999999999999999850338788
Q gi|255764505|r 126 ELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 126 e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
.++..++..|.||+++|+||.. .......+|.++.+|. . ++ +.|- ...+-.+.||--+...||...++
T Consensus 613 k~~sni~EvkARga~vI~I~~~-~~~~~~~~~~~i~iP~-~--~~--l~pi----l~~IplQLlAY~~A~~rG~dvD~ 680 (691)
T PTZ00295 613 LMMNTAEQVKARGAHIICITDD-ENLCKHIADDIILIPS-N--GI--LTAL----LAVIPLQLLAYYTAICKGINPDR 680 (691)
T ss_pred HHHHHHHHHHHCCCEEEEEECC-CCHHHHCCCCEEECCC-C--CC--CCHH----HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8999999999769979999567-3121204771898899-8--65--0079----99999999999999976999999
No 209
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.003 Score=43.99 Aligned_cols=143 Identities=20% Similarity=0.178 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHCCCEEECCCEEEEEECCCC-CHHH
Q ss_conf 36699999999827995999933813799999999987508-861101233023202301210470789836878-0788
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTG-TPSFFVHAAEASHGDLGMITRDDLIIVLSWSGS-SDEL 127 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G-~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~-t~e~ 127 (341)
.+.+.+..+.+.+++ +++|.|=|-..-+|+..|-+|.-+- ++|--+.+.|.-||-+-.+.++..||+|--.+. -..+
T Consensus 442 ~~~i~~~a~~l~~~~-~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~~~pVi~i~p~~~~~ek~ 520 (597)
T COG0449 442 EEKIKELAKRLADAK-DFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDENTPVIAIAPKPDLFEKT 520 (597)
T ss_pred CHHHHHHHHHHCCCC-CEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCHHHCCCCEEEECCCCCEEEEECCCHHHHHH
T ss_conf 789999999860568-7899867887376766566655421311056400132367148973997389996762578999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 7666663204562799844788954521453376886155432475217899999999999999999850338788
Q gi|255764505|r 128 KAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 128 ~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
...++..+.+|.++|.|+.... .+...|..+..|...| -++|-.++. -.+.||--+..+||...+.
T Consensus 521 ~sni~Ev~aRg~~~i~i~~~~~--~~~~~~~~i~~p~~~e----~laPi~~~i----PlQLLAY~iA~~kG~dvD~ 586 (597)
T COG0449 521 KSNIQEVRARGGKIIVIADEGD--VAEDGDDLILLPEVDE----LLAPLLYTI----PLQLLAYHIALAKGIDVDK 586 (597)
T ss_pred HHHHHHHHCCCCEEEEEECCCC--CCCCCCEEEECCCCCC----HHHHHHHHH----HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999716974999945776--5566752786688752----232288889----9999999999974999888
No 210
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.89 E-value=3.8e-05 Score=57.80 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=46.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEE---ECCCCCEEEEEEECCCHHH
Q ss_conf 33333210475430551002388889874104662000---0004323232412340356
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVA---VVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~---Vvd~~~~liGIITdgDlrR 274 (341)
..|+++|.+ +..+|.+++++.+|++.|.+.+...++ |++++|+++||+|..||.|
T Consensus 61 ~pV~~~M~~--~p~~v~~~~~i~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr 118 (119)
T cd04598 61 KPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHC
T ss_conf 958997168--9879989896999999998569332578858957998999989899407
No 211
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.88 E-value=1.2e-05 Score=61.39 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 887666663204562799844788954521453376886155----4324752178999999999999999998503387
Q gi|255764505|r 126 ELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPE----SCPHGLAPTTSAIMQLAIGDALAIALLESRNFSE 201 (341)
Q Consensus 126 e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~E----a~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~ 201 (341)
|---++..|++-|+-+| ..|-++.+.++.+-.+.. .| .+|..+-|..+ +.|++. ||++++|+-
T Consensus 64 E~~MAIamA~~GGiGVI----H~Nmsie~Qa~~V~~VKr-~esg~I~dPvti~p~~T------v~da~~--l~~k~~~sg 130 (497)
T PRK07107 64 DDNMAIALAREGGLSFI----FGSQSIESEAAMVRRVKN-HKAGFVISDSNLTPDNT------LADVLD--LKERTGHST 130 (497)
T ss_pred CHHHHHHHHHCCCEEEE----CCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC------HHHHHH--HHHHCCCCE
T ss_conf 09999999977997998----799999999999999956-35676689817589864------999999--888719962
Q ss_pred HHHHH-----HHHHHHHH--------HH-HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEE
Q ss_conf 88875-----31100111--------12-433333210475430551002388889874104662000000432323241
Q gi|255764505|r 202 NDFYV-----LHPGGKLG--------TL-FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGII 267 (341)
Q Consensus 202 ~df~~-----~HPgG~lg--------~~-Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGII 267 (341)
=-... ...=|-+- .. -.+|+|+|.+.+++.+++++.++.||...|.+++...+||+|++++|.|++
T Consensus 131 ~PVvd~g~~~gkLvGIvT~RD~rf~~~~~~~~V~~vMT~~~~Lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~g~L~gLi 210 (497)
T PRK07107 131 IAVTEDGTANGKLLGIVTSRDYRVSRMSLDTKVKDFMTPFEKLVVAKVGITLKEANNIIWDHKLNTLPIIDKNQHLVYMV 210 (497)
T ss_pred EEEEECCCCCCEEEEEEECCEEECCCCCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEE
T ss_conf 34510378598799998464011113677776656406765427846889999999999863444302783799589999
Q ss_pred ECCCHHHHH
Q ss_conf 234035676
Q gi|255764505|r 268 TEGDIFRNF 276 (341)
Q Consensus 268 TdgDlrR~l 276 (341)
|-+||++..
T Consensus 211 T~kDi~k~~ 219 (497)
T PRK07107 211 FRKDYDSHK 219 (497)
T ss_pred EHHHHHHHH
T ss_conf 837888864
No 212
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.001 Score=47.34 Aligned_cols=95 Identities=25% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCC---CCCCCCCCCHHHH--CCCEEECC-CEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 79959999338137999999999875088---6110123302320--23012104-707898368780788766666320
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGT---PSFFVHAAEASHG--DLGMITRD-DLIIVLSWSGSSDELKAILYYARR 136 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~---~a~~~~~~ea~Hg--dlg~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~ 136 (341)
.+ .|+++|+|+|++-++-+..-|.-... ..+|+.-.+..|- =+-.+.++ -+++.+|+||.|.|++...+.+++
T Consensus 79 ~~-~iV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~ 157 (446)
T COG0166 79 IT-DIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARK 157 (446)
T ss_pred CC-EEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 44-39997875558999999998644046887459825788223467885268562799999589895889988999999
Q ss_pred CC-------CCEEEEECCCCCHHHHCCCC
Q ss_conf 45-------62799844788954521453
Q gi|255764505|r 137 FS-------IPLIAITSENKSVVACHADI 158 (341)
Q Consensus 137 ~~-------~~iI~iT~~~~S~la~~ad~ 158 (341)
.. .+....|+...+.+++.++.
T Consensus 158 ~~~~~~~~~~~~~v~~~~~~~~l~~~~~~ 186 (446)
T COG0166 158 WLEKKEEAAKKHFVATSTNGGALAVLAGE 186 (446)
T ss_pred HHHHHHHHHHCEEEEECCCCHHHHHHCCC
T ss_conf 99864664514799982871578886177
No 213
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.82 E-value=7.6e-05 Score=55.63 Aligned_cols=53 Identities=32% Similarity=0.477 Sum_probs=47.9
Q ss_pred HHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 3332104754305510023888898741046620000004323232412340356
Q gi|255764505|r 220 ASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 220 V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
+.++|.+ +.+++.+++++.+++..|.+++..+++|+|++++++|++|..|+.+
T Consensus 60 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~iG~vs~~di~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred EEEEEEC--CCEEEEECCHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEHHHHHC
T ss_conf 0456750--5468973211779999999849729999966997999998899746
No 214
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.82 E-value=2.7e-05 Score=58.94 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=52.7
Q ss_pred HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 243333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 216 LFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 216 ~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
+..+|+|+|.+ ++.++++..++.||..+|.+++.+.+||+|++++|.|+||-.|+.|.
T Consensus 146 ~~~~v~~vMT~--~lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~~~L~gLiT~kDi~k~ 203 (479)
T PRK07807 146 RFTRVGDVMST--DLVTLPAGTDPRKAFDLLEAAPVKVAPVVDADGRLAGVLTRTGALRA 203 (479)
T ss_pred CCCCHHHHHCC--CCEEECCCCCHHHHHHHHHHCCCCCCEEECCCCEEEEEEEEEHHHHC
T ss_conf 77758886257--73661366787999999975352311377569929999996116454
No 215
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.81 E-value=7.4e-05 Score=55.71 Aligned_cols=110 Identities=22% Similarity=0.302 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCCCCCEEE-EEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf 1243333321047543055-100238888987410466200000043232324123403567617823370988348897
Q gi|255764505|r 215 TLFVCASDVMHSGDSIPLV-KIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNP 293 (341)
Q Consensus 215 ~~Ll~V~DiM~~~~~ip~V-~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p 293 (341)
.+.++++++|++ .+.+.. .+...-..++..+.........+++..++.+|+++.++.... .+...+
T Consensus 271 ~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------~~~~~~ 337 (386)
T COG4175 271 SRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------ALIDDV 337 (386)
T ss_pred HHEEEHHHHHCC-CCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCHHCC------------CCCCCC
T ss_conf 332238776314-5434445555563112123332241136777425752558964620101------------014653
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 897799878999999996799589998069848999858889743
Q gi|255764505|r 294 KVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 294 ~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.++.+++++.+.+..+.+.. ..+||||++++++|+++...++.+
T Consensus 338 ~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~a 381 (386)
T COG4175 338 LTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEA 381 (386)
T ss_pred CCCCCCCHHHHHHHHHHCCC-CCEEEECCCCCEEEEECHHHHHHH
T ss_conf 35676424889999875289-854688578857778638899999
No 216
>pfam00571 CBS CBS domain. CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP.
Probab=97.80 E-value=2.4e-05 Score=59.31 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=51.1
Q ss_pred HHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH
Q ss_conf 3332104754305510023888898741046620000004323232412340356761
Q gi|255764505|r 220 ASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277 (341)
Q Consensus 220 V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~ 277 (341)
+.++|.+ +.+++++++++.+++..|.+++..+++|+|+++++.|++|..|+.+.+.
T Consensus 1 v~~im~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvit~~dl~~~~~ 56 (57)
T pfam00571 1 VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL 56 (57)
T ss_pred CCCCCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHC
T ss_conf 9422779--9989979090999999998539957999927994999997899999866
No 217
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=0.00067 Score=48.75 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=100.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHH-HHH
Q ss_conf 999999982799599993381379999999998750-886110123302320230121047078983687807887-666
Q gi|255764505|r 54 HCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELK-AIL 131 (341)
Q Consensus 54 ~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~-~~~ 131 (341)
.+......+.+ ++++.|-|-..-+|...+-+|.-+ ++++.-++.+|..||-+-++.++-.||++-..++|+++. +++
T Consensus 192 ~~~~~~~~~~~-~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~r~~ 270 (340)
T COG2222 192 QEFAEEYADED-RIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDERAL 270 (340)
T ss_pred HHHHHHHCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 99999735897-79997785217999999999998704001551134101475977379952999944874045799999
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 663204562799844788954521453376886155432475217899999999999999999850338788
Q gi|255764505|r 132 YYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 132 ~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
+.+++.|++++.+-... ..+.++..+... |-....+.+...+.++..+...||.+++.
T Consensus 271 ~~~~~~ga~v~vi~a~~---------~~~~~~~~~~~~-----~l~~~~~~~~v~~~~~~~~a~~rg~~pd~ 328 (340)
T COG2222 271 KFLKNYGAKVLVIDAKD---------AALDLIDQRVRH-----DLAPPLLSLVVAQRLAYALAVARGHNPDT 328 (340)
T ss_pred HHHHHHCCEEEEECCCC---------CCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99986088699974766---------566777712241-----36678888789999999999861999999
No 218
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=97.74 E-value=0.00038 Score=50.56 Aligned_cols=195 Identities=23% Similarity=0.285 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHH-CCCCCCC-CCCCCHHH-------HCCCEEECCCEEEEEECC
Q ss_conf 6999999998279-959999338137999999999875-0886110-12330232-------023012104707898368
Q gi|255764505|r 52 QFHCAVEKIKAIK-GRVVITGIGKSGHIGSKLASTLAS-TGTPSFF-VHAAEASH-------GDLGMITRDDLIIVLSWS 121 (341)
Q Consensus 52 ~~~~av~~i~~~~-grv~~~GvG~S~~ia~k~a~tl~s-~G~~a~~-~~~~ea~H-------gdlg~i~~~Dv~i~iS~S 121 (341)
+|....+.+.... .+|+++|||+|.+--+=++.||.. -|.|-.+ ++.++--+ .|| +.-++|..|+|
T Consensus 442 ~~~~fa~~vr~~g~t~vvl~GMGGSSLaPEVia~tf~~~~g~P~L~VLDSTDP~~V~a~~~~lDL----~rTlfvVsSKS 517 (950)
T PRK09533 442 DYEAFAAEVKAQGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDL----ARTLFIVSSKS 517 (950)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCC----CCEEEEEEECC
T ss_conf 99999999986698769994787320409999987233579970799659898999999854895----54699999689
Q ss_pred CCCHHHHHHHHHHH----------CCCCCEEEEECCCCCHHHHCCC---C-EEEE-E--EE---CCCCCCCCCHHHHHHH
Q ss_conf 78078876666632----------0456279984478895452145---3-3768-8--61---5543247521789999
Q gi|255764505|r 122 GSSDELKAILYYAR----------RFSIPLIAITSENKSVVACHAD---I-VLTL-P--KE---PESCPHGLAPTTSAIM 181 (341)
Q Consensus 122 G~t~e~~~~~~~~k----------~~~~~iI~iT~~~~S~la~~ad---~-~l~~-~--~~---~Ea~~~~~aPt~Stt~ 181 (341)
|.|-|+.....+.. +.+-.+|.|| .|.|+|.+.+. + .+.. + +. .--.++|++|..=.=.
T Consensus 518 GsTvEt~s~~~~F~~~~~~a~G~~~~g~hfVaVT-DPGSpLek~A~~~g~~~vF~~dP~VGGRfSALSaFGLVPAALaGi 596 (950)
T PRK09533 518 GGTTEPNVFKDYFFARVKEVLGADKAGRHFVAVT-DPGSSLEKVAKEDGFAKIFHGDPSIGGRYSVLSPFGLVPAAAAGI 596 (950)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE-CCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCHHHHHHHCC
T ss_conf 8842139999999999987416568012489997-999778999997898067517979886111300022677988557
Q ss_pred --HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEHHHH-------HHHHHHH-HCCC
Q ss_conf --999999999999985033878887531100111124-3333321047543055100238-------8889874-1046
Q gi|255764505|r 182 --QLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDVMHSGDSIPLVKIGCPL-------IDAITIL-SEKR 250 (341)
Q Consensus 182 --~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~~~~ip~V~~~~si-------~eal~~m-~~~~ 250 (341)
.-.+-+|.+++- .+..+.=....||=.||.-+ ..... -.+++-++. ...+ .+.+.+= -+.+
T Consensus 597 Di~~LLd~A~~~~~----~~~~d~~~~~NPal~Lga~lg~~~~~---GRDKv~l~~-~~~i~~fg~W~EQLIAESTGK~G 668 (950)
T PRK09533 597 DVRKFLDSALAMVR----SCGADVPPAQNPGVQLGLALGVAALE---GRDKVTIVA-SPGIADFGAWAEQLIAESTGKEG 668 (950)
T ss_pred CHHHHHHHHHHHHH----HCCCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEEC-CCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 89999989999999----70567983309799999999887653---787499845-88745088999999886138888
Q ss_pred CCEEEECCC
Q ss_conf 620000004
Q gi|255764505|r 251 FGCVAVVDE 259 (341)
Q Consensus 251 ~g~v~Vvd~ 259 (341)
.|.+||.++
T Consensus 669 kGilPV~~e 677 (950)
T PRK09533 669 KGLIPIDGE 677 (950)
T ss_pred CCCCCCCCC
T ss_conf 511354677
No 219
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.71 E-value=0.00013 Score=53.84 Aligned_cols=171 Identities=10% Similarity=0.103 Sum_probs=92.3
Q ss_pred HHHHHHH-HHHCCCCCEEEEECCCCCHHHHCCCCEEEEE---EECCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8876666-6320456279984478895452145337688---6155432475--21789999999999999999985033
Q gi|255764505|r 126 ELKAILY-YARRFSIPLIAITSENKSVVACHADIVLTLP---KEPESCPHGL--APTTSAIMQLAIGDALAIALLESRNF 199 (341)
Q Consensus 126 e~~~~~~-~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~---~~~Ea~~~~~--aPt~Stt~~l~~~Dalav~l~~~~~~ 199 (341)
++.+.+. ..++.+.++|-||.+.+ --.+.||-..... +.+.+.|..+ .|-....+.++
T Consensus 202 ~l~~~l~~L~~~~~~TiifVTHD~~-EA~~laDRIaVM~~G~IvQ~gtpeeI~~~Pan~~V~~Fv--------------- 265 (382)
T TIGR03415 202 QLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV--------------- 265 (382)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCHH-HHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHC---------------
T ss_conf 9999999999986998999879999-999868989999899899965889998679975898622---------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCC
Q ss_conf 87888753110011112433333210475430551002388889874104662000000432323241234035676178
Q gi|255764505|r 200 SENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKD 279 (341)
Q Consensus 200 t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~ 279 (341)
|..=.-+.++++++|.+... ....+....-+...+.. ..+.+.. +. ..+-...+. .
T Consensus 266 ----------g~~~~~~vl~a~~vm~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~-~~~~~~~~~-~ 321 (382)
T TIGR03415 266 ----------AHTNPLNVLTARSLMRPLTD--LEHVDGGWCVSDRRDTW-----LFTIDKQ-----VR-RRDAKLPVQ-A 321 (382)
T ss_pred ----------CCCCCCCEEEHHHHCCCCCC--CCCCCCCHHHHHHHCCC-----CCCCCHH-----HH-CCCCCCHHH-H
T ss_conf ----------97872112568784367410--01357403344332000-----0132022-----10-144310222-2
Q ss_pred CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 23370988348897897799878999999996799589998069848999858889743
Q gi|255764505|r 280 LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 280 ~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.......+.+...+.++.+++++.+++..|.+.... +||+++|+++|+|+..+++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~v~~~g~l~G~i~~~~~l~~ 378 (382)
T TIGR03415 322 WAAEQEVESLEAAPTVINPDTLMRDVLAARHRTGGA--ILLVENGRIVGVIGDDNIYHA 378 (382)
T ss_pred CCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHCCCC--EEEECCCEEEEEEEHHHHHHH
T ss_conf 134430223125773338989399999999858998--099059959999868999998
No 220
>pfam10740 DUF2529 Protein of unknown function (DUF2529). This family is conserved in the Bacillales. The function is not known. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.
Probab=97.67 E-value=0.0014 Score=46.37 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=92.6
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHHCCCCCC---CCCCCCHHHHCCCEEECC
Q ss_conf 9999972001136699999999827---9959999338137999999999875088611---012330232023012104
Q gi|255764505|r 39 SSLESSLQGELSFQFHCAVEKIKAI---KGRVVITGIGKSGHIGSKLASTLASTGTPSF---FVHAAEASHGDLGMITRD 112 (341)
Q Consensus 39 ~~l~~~l~~~~~~~~~~av~~i~~~---~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~---~~~~~ea~Hgdlg~i~~~ 112 (341)
.-+-+++......+|+.++.+|..| .|+|++.|.|-=-.+ ..++..|.-.+ --.+.| .++..-+++-
T Consensus 10 ~Gif~rI~ekee~~iEdaARlLAQAiigeG~VYi~G~~Em~~v-----~~eal~g~E~l~~~k~l~~~--~~~~~~~t~t 82 (172)
T pfam10740 10 TGIFNRITEKEELAIEDGARLLAQAIIGEGNVYIKGFNEMEAV-----ELEALEGVEPLPSAKPLPLD--ATEFADITET 82 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-----HHHHHCCCCCCCCCCCCCCC--CCCCCCCCCC
T ss_conf 9999884266787699999999999726977999725469989-----99997287767544337555--6651007755
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCCHHHHCCCCEEEEEEEC------CCCCCCCCHHHHHHHHHH
Q ss_conf 7078983687807887666663204562799844--78895452145337688615------543247521789999999
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAITS--ENKSVVACHADIVLTLPKEP------ESCPHGLAPTTSAIMQLA 184 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~--~~~S~la~~ad~~l~~~~~~------Ea~~~~~aPt~Stt~~l~ 184 (341)
|=|+.+|-+-+.+|.+..++.++.+|+.+++|+. .....+..++|++|++...+ +.+.++ -| |..+.|-
T Consensus 83 DRVLlfs~~~~d~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~vhId~~l~~~LvP~EdG~Rig-~P--~~ma~ly 159 (172)
T pfam10740 83 DRVLLFSRFSNDEEAVALAKKLYDQGIDVVAVSPNAKEGDSLADHADVHIDLKLKRPLVPDEDGTRIG-FP--SLMAALY 159 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCEEE-CC--HHHHHHH
T ss_conf 76999769999789999999999869988998168888876144402667647787866188898730-71--7999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764505|r 185 IGDALAIAL 193 (341)
Q Consensus 185 ~~Dalav~l 193 (341)
+=.+|...+
T Consensus 160 ~Y~~l~~~~ 168 (172)
T pfam10740 160 VYHALKFTL 168 (172)
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 221
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=97.66 E-value=5.4e-05 Score=56.68 Aligned_cols=58 Identities=34% Similarity=0.460 Sum_probs=52.6
Q ss_pred HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 43333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 217 FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
-.+|+++|.+ +++.++.++.++.||...|.++++..+||+|++++|+|+||-.|+.|.
T Consensus 146 ~~~V~~vMT~-~~lvt~~~~is~~eA~~~l~~~kieklPvVd~~g~L~Glit~kDi~k~ 203 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLLVVDDNGRLKGLITVKDIEKA 203 (486)
T ss_pred CCCHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHH
T ss_conf 7654675345-732892588999999999997313034277468968888776677765
No 222
>KOG0475 consensus
Probab=97.65 E-value=0.00044 Score=50.08 Aligned_cols=243 Identities=19% Similarity=0.221 Sum_probs=132.7
Q ss_pred HHHHHHHHHCC--CCCCCCCCCCHHHHCCCE--------E-ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999987508--861101233023202301--------2-104707898368780788766666320456279984478
Q gi|255764505|r 80 SKLASTLASTG--TPSFFVHAAEASHGDLGM--------I-TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSEN 148 (341)
Q Consensus 80 ~k~a~tl~s~G--~~a~~~~~~ea~Hgdlg~--------i-~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~ 148 (341)
-|++.|--+.| .|+=+.-|+=|.-+-.|+ + ...|-.+. +.|=-|+-+-.++-.|- .+=|+|.-+
T Consensus 408 ~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~f-g~~ci~Pg~Ya~vGaAA----~LsGvtrlt 482 (696)
T KOG0475 408 LKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLF-GLSCATPGAYALVGAAA----TLSGVTRLT 482 (696)
T ss_pred HHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHCCCHHHHHHHHHH----HHCCCCEEE
T ss_conf 9999999655136763155313888888888999999987217775544-41014713889988899----861751456
Q ss_pred CCHHHHCCCCEEEEEEECCCCCCCC-CHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8954521453376886155432475-21789999-999999999999985033878887531100111124333332104
Q gi|255764505|r 149 KSVVACHADIVLTLPKEPESCPHGL-APTTSAIM-QLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHS 226 (341)
Q Consensus 149 ~S~la~~ad~~l~~~~~~Ea~~~~~-aPt~Stt~-~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~ 226 (341)
-+ =++| .-+--.-+++ .|+.--++ .--++|++.-.=.....++.+-|-.. |.-+.-. -.-..++|.+
T Consensus 483 vt------lVVI---mFELTG~l~~IlPLm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l-~~k~e~~-~t~~~~v~~p 551 (696)
T KOG0475 483 VT------LVVI---MFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFL-DSKSEFS-STLAIPVMEP 551 (696)
T ss_pred EE------EEEE---EEECCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC-CCCCCCC-CCHHHHHHCH
T ss_conf 78------8888---6540476000798999999999887321200278888886197776-5322112-2033443131
Q ss_pred ---CCCCEEEEEH-HHHHHHHHHHHCCCCCEEE-ECC-CCCEEEEEEECCCHHHHHH------CC---------------
Q ss_conf ---7543055100-2388889874104662000-000-4323232412340356761------78---------------
Q gi|255764505|r 227 ---GDSIPLVKIG-CPLIDAITILSEKRFGCVA-VVD-EGQKLKGIITEGDIFRNFH------KD--------------- 279 (341)
Q Consensus 227 ---~~~ip~V~~~-~si~eal~~m~~~~~g~v~-Vvd-~~~~liGIITdgDlrR~l~------~~--------------- 279 (341)
...+-.+..+ .++.|....|.+..+..-+ |++ +.++++|.+..+|+.-.+. +.
T Consensus 552 ~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~ 631 (696)
T KOG0475 552 CRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSA 631 (696)
T ss_pred HCCCHHHEECCCCCEEHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC
T ss_conf 01762221205565168999888862442785279715642267887157888988653005654131113367887434
Q ss_pred ----CCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCC
Q ss_conf ----233709883488978977998789999999967995899980698489998588897436
Q gi|255764505|r 280 ----LNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFG 339 (341)
Q Consensus 280 ----~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkag 339 (341)
......+++|...|+++....++....+++++-.++++.| +++|++.|+||-.|+++.-
T Consensus 632 ~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475 632 VAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEE-CCCCEEEEEEEHHHHHHHH
T ss_conf 58999875763204687603434584899999998617258998-1598267665348988862
No 223
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.62 E-value=6.9e-05 Score=55.92 Aligned_cols=72 Identities=29% Similarity=0.453 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 387888753110-01111243333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 199 FSENDFYVLHPG-GKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 199 ~t~~df~~~HPg-G~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
||--|..+.=-. ..+- ..|+|+|.+.. .++.++....||++.|.++++..+||+|++++++|++.-.||.|.
T Consensus 246 ITDGDLRR~l~k~~~L~---~~v~~vMT~nP--~tI~~d~la~eAl~iM~~~kI~~LpVvd~~~k~vGiIhiHDLl~~ 318 (321)
T PRK11543 246 FTDGDLRRWLVGGGALT---TPVNEAMTVGG--TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EECHHHHHHHHCCCCHH---HHHHHHHCCCC--CEECCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHC
T ss_conf 74438999986378567---68999848999--578998719999999998798689998589959999638978676
No 224
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=97.60 E-value=0.00063 Score=48.90 Aligned_cols=90 Identities=29% Similarity=0.288 Sum_probs=59.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHC---CCCCCCCCCCCHH--HHCCCEEECC-CEEEEEECCCCCHHHHHHHHHHHC---
Q ss_conf 599993381379999999998750---8861101233023--2023012104-707898368780788766666320---
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLAST---GTPSFFVHAAEAS--HGDLGMITRD-DLIIVLSWSGSSDELKAILYYARR--- 136 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~---G~~a~~~~~~ea~--Hgdlg~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~--- 136 (341)
.|++.|+|+|.+=++=+...|... +..-+|++-.|.. ..=+..+.+. -+++.+|+||.|.|++....++++
T Consensus 22 ~iv~iGiGGS~LG~k~l~~al~~~~~~~~~i~f~dn~Dp~~~~~~l~~l~~~~TlfiviSKSg~T~ETl~~~~~~~~~l~ 101 (158)
T cd05015 22 DVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKSGTTLETLANARLAREWLE 101 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 69998143338999999999762454895699957999899999997279301499997599986899999999999999
Q ss_pred ------CCCCEEEEECCCCCHHHHCC
Q ss_conf ------45627998447889545214
Q gi|255764505|r 137 ------FSIPLIAITSENKSVVACHA 156 (341)
Q Consensus 137 ------~~~~iI~iT~~~~S~la~~a 156 (341)
.+-..++||.+ +|++.+.+
T Consensus 102 ~~~~~~~~~~~vaIT~~-~s~l~~~a 126 (158)
T cd05015 102 EAGGDDLAKHFVAITDN-GSGLLKKA 126 (158)
T ss_pred HHCCHHHHHHEEEEECC-CHHHHHHH
T ss_conf 83203556607898059-66999985
No 225
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=97.57 E-value=0.00012 Score=54.06 Aligned_cols=74 Identities=26% Similarity=0.300 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH
Q ss_conf 3878887531100111124-333332104754305510023888898741046620000004323232412340356761
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLF-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~ 277 (341)
.|..|+...|=.- |+.. .+|+++|+. .+..|.+++-+.||...|+++++..++|+. +|+++|++|..||.|...
T Consensus 196 vT~~dl~~~v~~~--g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 196 VTRKDLRSRVIAD--GRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred EEHHHHHHHHHHC--CCCCCCCHHHHHCC--CCEEECCCCHHHHHHHHHHHHCCCEEEEEC-CCEEEEEEEHHHHHHHHC
T ss_conf 4227778999865--89742335454146--844544765699999999980774423611-890467766999997617
No 226
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=97.54 E-value=0.0011 Score=47.07 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=98.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCC---CCCCCCCCCCHHHHCCCEEECCCEEEEEECCC-CCHH-HHHHHHHHHC--CCC
Q ss_conf 999933813799999999987508---86110123302320230121047078983687-8078-8766666320--456
Q gi|255764505|r 67 VVITGIGKSGHIGSKLASTLASTG---TPSFFVHAAEASHGDLGMITRDDLIIVLSWSG-SSDE-LKAILYYARR--FSI 139 (341)
Q Consensus 67 v~~~GvG~S~~ia~k~a~tl~s~G---~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG-~t~e-~~~~~~~~k~--~~~ 139 (341)
|+|.|-|-+.-+|+..|-++.-+- +++....+.|.-||-+-++.++-.+|++-..+ .+++ ..++++..++ .++
T Consensus 1 vv~LGrG~~y~iA~EgALKlKEis~~yihae~ys~~e~KHGPiALid~~tpvi~~~~~d~~~~~~~~~li~ei~~~~~~~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98980688638899999999998876777512461124657563216997189995388188887657999998226897
Q ss_pred CEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 2799844788954521453376886155432475217899999999999999999850338788875311001111
Q gi|255764505|r 140 PLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGT 215 (341)
Q Consensus 140 ~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~ 215 (341)
.+|+|+...+..+...+|..+..+ ++.+.. + ........++.||--+...||++++. =-|+|.+-|
T Consensus 81 ~ii~i~~~~~~~~~~~~~~~i~~~--~~~~~~-~----~~~~~~iplQLlAy~~Av~rG~dpD~---P~~~g~~~r 146 (151)
T cd05010 81 RVIAISPESDAGIEDNSHYYLPGS--RDLDDV-Y----LAFPYILYAQLFALFNSIALGLTPDN---PCPSGTVNR 146 (151)
T ss_pred EEEEEECCCCCCCCCCCCEEEECC--CCCCHH-H----HHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCEEEE
T ss_conf 899994588633235676796479--987538-8----88999999999999999986999999---999980622
No 227
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.52 E-value=0.00027 Score=51.56 Aligned_cols=53 Identities=26% Similarity=0.311 Sum_probs=46.9
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 33333210475430551002388889874104662000000432323241234035
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
..++++|+ .++++.+++++.+++..|.+++...++|+|+.|+++|++|..|+.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~~~l~~~~~~~~~~a~VvDe~G~~~GivT~~Dil 109 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred CCHHHHCC---CCEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHH
T ss_conf 40776404---422225566588999843554967999996999999999804853
No 228
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.49 E-value=0.00023 Score=52.06 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=51.9
Q ss_pred HHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 43333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 217 FVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
-.+|+++|.+ ++.+.+++.++.||...|.+++.+.+||+|++++|+|++|-.|+.|.
T Consensus 157 ~~~v~~vMt~--~lvt~~~~isl~eA~~ll~~~kieklpvVd~~g~L~glit~kDi~k~ 213 (499)
T PTZ00314 157 STPVSEIMTT--DLVVGRYPITLEDANDVLNRSRKGVLPIVNDNGELVALVSRSDAVKN 213 (499)
T ss_pred CCCHHHHHCC--CCEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHH
T ss_conf 7588886156--72672599999999999986033123066578958998630348775
No 229
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.44 E-value=0.00017 Score=53.12 Aligned_cols=71 Identities=25% Similarity=0.465 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 3878887531100111124--3333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLF--VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~L--l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
||--|..+.--. |..+ .+++|+|.+... +|++++...||+..|.++++..++|+|+ ++++|++.-.|+.|.
T Consensus 251 iTDGDLRR~l~~---~~~i~~~~~~diMT~nP~--tI~~d~la~eAL~iMe~~kIt~L~Vvd~-~k~vGIihihDll~~ 323 (326)
T PRK10892 251 FTDGDLRRVFDM---GVDLRQLSIADVMTPGGI--RVRPGILAVDALNLMQSRHITSVLVADG-DQLLGVLHMHDLLRA 323 (326)
T ss_pred EECHHHHHHHHH---CCCCCCCCHHHHHCCCCC--EECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHC
T ss_conf 862689999870---688312879997189996--7899886999999998639818999889-999999767978676
No 230
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0028 Score=44.20 Aligned_cols=145 Identities=16% Similarity=0.223 Sum_probs=84.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCC-----EEEEEHHH----HHHHHHHH-HCCCCCEEEEC
Q ss_conf 999985033878887531100111---1243333321047543-----05510023----88889874-10466200000
Q gi|255764505|r 191 IALLESRNFSENDFYVLHPGGKLG---TLFVCASDVMHSGDSI-----PLVKIGCP----LIDAITIL-SEKRFGCVAVV 257 (341)
Q Consensus 191 v~l~~~~~~t~~df~~~HPgG~lg---~~Ll~V~DiM~~~~~i-----p~V~~~~s----i~eal~~m-~~~~~g~v~Vv 257 (341)
..+++.-|+ ++|+...|.--=| ++.--++-+... .++ |+-.-|.. +.+-+..+ .+.+...++|+
T Consensus 146 ~e~L~~VgL--~~~~~~yP~eLSGGqqQRVaiARALa~~-P~iLL~DEP~SALDp~~r~~i~~~l~~L~~~~~~TiifVT 222 (400)
T PRK10070 146 LDALRQVGL--ENYAHSYPDELSGGMRQRVGLARALAIN-PDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred HHHHHHCCC--CHHHCCCHHHCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 999997499--0242189344899999999999998629-9999970876545989999999999999998599999989
Q ss_pred CCC------CEEEEEEECCCHH-----------------HHHHCCCC---CCCHHHHCCCCCEEE---CCCCCHHHHHHH
Q ss_conf 043------2323241234035-----------------67617823---370988348897897---799878999999
Q gi|255764505|r 258 DEG------QKLKGIITEGDIF-----------------RNFHKDLN---TLSVEDVMIKNPKVI---LEDTLLTVAMQL 308 (341)
Q Consensus 258 d~~------~~liGIITdgDlr-----------------R~l~~~~~---~~~v~~iMt~~p~~I---~~d~~i~eAl~l 308 (341)
.+- +.=+.+.-+|.+. +.+..+.. -.+++++|.++|..+ .+.....+|++.
T Consensus 223 HDl~eA~~laDRIaVM~~G~Ivq~GtpeeI~~~Pa~~yV~~F~~~v~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~al~~ 302 (400)
T PRK10070 223 HDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKL 302 (400)
T ss_pred CCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHCCCCHHHCEEHHHHHCCCCCCEEECCCCCCHHHHHHH
T ss_conf 99999998699999998988999728899986799868998755477877023989624687521314888699999999
Q ss_pred HHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 996799589998069848999858889743
Q gi|255764505|r 309 LRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 309 M~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
|.+++++.+.|||+++++.|+|+..++.++
T Consensus 303 m~~~~~~~~~vvd~~~~~~G~v~~~~~~~~ 332 (400)
T PRK10070 303 LQDEDREYGYVIERGNKFVGAVSIDSLKAA 332 (400)
T ss_pred HHHCCCCEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 985598679998699808899889999977
No 231
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.29 E-value=0.00063 Score=48.94 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCC------CCHHHHCCCC
Q ss_conf 3333210475430551002388889874104662000000432323241234035676178233------7098834889
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNT------LSVEDVMIKN 292 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~------~~v~~iMt~~ 292 (341)
.++++|++ .++|+++.++.++++.|.+.+...++|+|+.|...|++|--|+...+-.++.+ ..+. -...+
T Consensus 256 ~~~~~~r~---~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEeivGei~DE~d~~~~~~~-~~~~~ 331 (408)
T TIGR03520 256 DWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYS-KIDDN 331 (408)
T ss_pred CHHHHHHH---CCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEE-ECCCC
T ss_conf 88998632---148999778899999998638748999989998789988899899995888686776655508-73798
Q ss_pred CEEECCCCCHHHHHHHHH
Q ss_conf 789779987899999999
Q gi|255764505|r 293 PKVILEDTLLTVAMQLLR 310 (341)
Q Consensus 293 p~~I~~d~~i~eAl~lM~ 310 (341)
-+.++-..++.|..+.+.
T Consensus 332 ~~~v~G~~~l~dl~~~l~ 349 (408)
T TIGR03520 332 NYVFEGKTSLKDFYKILK 349 (408)
T ss_pred EEEEEECCCHHHHHHHHC
T ss_conf 699980269999999858
No 232
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.24 E-value=0.0012 Score=46.96 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCC---C----CCHHHHCCCCCEEECCCCC
Q ss_conf 43055100238888987410466200000043232324123403567617823---3----7098834889789779987
Q gi|255764505|r 229 SIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLN---T----LSVEDVMIKNPKVILEDTL 301 (341)
Q Consensus 229 ~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~---~----~~v~~iMt~~p~~I~~d~~ 301 (341)
..++|++..++.+++..|.+.+...++|+|+.|...|++|--|+...+-.++. + ..+-+..... +.++...+
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~ 358 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVP 358 (429)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC-EEEECCCC
T ss_conf 87177898979999999886387499999378984332658999999848775434554564226863896-79957315
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|255764505|r 302 LTVAMQLLR 310 (341)
Q Consensus 302 i~eAl~lM~ 310 (341)
+.|..+.+.
T Consensus 359 l~e~~~~l~ 367 (429)
T COG1253 359 LEELEELLG 367 (429)
T ss_pred HHHHHHHHC
T ss_conf 999998729
No 233
>pfam00342 PGI Phosphoglucose isomerase. Phosphoglucose isomerase catalyses the interconversion of glucose-6-phosphate and fructose-6-phosphate.
Probab=97.21 E-value=0.0076 Score=41.07 Aligned_cols=143 Identities=21% Similarity=0.184 Sum_probs=74.9
Q ss_pred CEEEEECCCHHHHHHHHHHHH---HHCCCCCCCCCCCCH--HHHCCCEEECC-CEEEEEECCCCCHHHHHHHHHHHCC--
Q ss_conf 599993381379999999998---750886110123302--32023012104-7078983687807887666663204--
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTL---ASTGTPSFFVHAAEA--SHGDLGMITRD-DLIIVLSWSGSSDELKAILYYARRF-- 137 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl---~s~G~~a~~~~~~ea--~Hgdlg~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~-- 137 (341)
.|+..|+|+|.+=-+-+..-| ..-+...+|+.-.|. ++.-|..+.+. .++|++|+||.|.|++.-...+++.
T Consensus 98 ~vV~IGIGGS~LGp~~~~~AL~~~~~~~~~~~FvsN~Dp~~~~~~l~~ld~~~TlfiV~SKSf~T~ETl~n~~~~~~wl~ 177 (483)
T pfam00342 98 DVVNIGIGGSDLGPRMVIEALKHYSENALIVFFVSNVDGTHIAEVLKKLNPETTLINVASKTFTTAETMTNARSAREWLL 177 (483)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 38995656500769999999865336982289956898789999996089202599997788784779999999999999
Q ss_pred ---------CCCEEEEECCCCCHHHHCCC--CEEEEEEECCCCCCCCCHHHHHHHHHHHH-----HHHHHHHHHHCCCCH
Q ss_conf ---------56279984478895452145--33768861554324752178999999999-----999999998503387
Q gi|255764505|r 138 ---------SIPLIAITSENKSVVACHAD--IVLTLPKEPESCPHGLAPTTSAIMQLAIG-----DALAIALLESRNFSE 201 (341)
Q Consensus 138 ---------~~~iI~iT~~~~S~la~~ad--~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~-----Dalav~l~~~~~~t~ 201 (341)
.-..++||.++...+..-.+ ..+.+|.. =...+.+--.......+++| +-|+-+-.--+.|..
T Consensus 178 ~~~~~~~~~~~h~vavT~~~~~a~~~g~~~~~if~~~d~-VGGRfSv~SaVGL~~al~~G~~~~~~lL~GA~~mD~h~~~ 256 (483)
T pfam00342 178 KKLGEKSAVAKHFVALSTNAKKVEKFGIDPENMFAFWDW-VGGRYSVWSAIGLPIALSIGFENFEELLEGAASMDKHFSS 256 (483)
T ss_pred HHCCCHHHHHCEEEEECCCHHHHHHHCCCHHHEEECCCC-CCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_conf 834985534114899628889999747666417425545-6883201575524789984507699999999999998616
Q ss_pred HHHHHHHH
Q ss_conf 88875311
Q gi|255764505|r 202 NDFYVLHP 209 (341)
Q Consensus 202 ~df~~~HP 209 (341)
.++..|=|
T Consensus 257 ~~~~~N~p 264 (483)
T pfam00342 257 TPLEKNAP 264 (483)
T ss_pred CCHHHCHH
T ss_conf 98101999
No 234
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.16 E-value=0.00038 Score=50.49 Aligned_cols=50 Identities=24% Similarity=0.283 Sum_probs=43.8
Q ss_pred HHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 21047543055100238888987410466200000043232324123403567
Q gi|255764505|r 223 VMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 223 iM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
+|.+ .-.++.+++++.+|...|.+.++..++|++ +|+++|+||-.|+.|+
T Consensus 56 ~m~~--~p~tv~~~~~l~~~~~lf~~~g~r~l~Vv~-~g~lvGiITr~Dl~~a 105 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HCCC--CCEEECCCCCHHHHHHHHHHHCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 5879--983989999599999999994995889957-9999999998995349
No 235
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=97.12 E-value=0.035 Score=36.24 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHH-HHHHHHHHC-CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHH-HHHH
Q ss_conf 999999982799599993381379999-999998750-8861101233023202301210470789836878078-8766
Q gi|255764505|r 54 HCAVEKIKAIKGRVVITGIGKSGHIGS-KLASTLAST-GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDE-LKAI 130 (341)
Q Consensus 54 ~~av~~i~~~~grv~~~GvG~S~~ia~-k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e-~~~~ 130 (341)
.+..+...+.+ .+++.|-|-+.-+|- ..|-+|.-+ -++|--.+++|.-||-+-++.++--||++-..+++.+ ....
T Consensus 206 ~~la~~~~~~~-~~~~lGrG~~~pia~~EgALKLKEisYIHAegy~agElKHGPiALId~~~PVi~i~~~d~~~~~~~~~ 284 (347)
T PRK11382 206 RQLGELASQWP-MIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTERA 284 (347)
T ss_pred HHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCEEEEECCCCHHHHHHHH
T ss_conf 99999985177-45998248661657999999999887775233558772677086637998679995485058999999
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 6663204562799844788954521453376886155432475217899999999999999999850338788
Q gi|255764505|r 131 LYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 131 ~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
++..|.+|+.++.+....- .+. .-|--|-....+-.+.||--+...||..++.
T Consensus 285 i~evkarg~~vivid~~~~---------------~~~-----~~~~l~Pil~~iPlQLlAY~~A~~rG~d~D~ 337 (347)
T PRK11382 285 INFVKQRTDNVIVIDYAEI---------------SQG-----LHPWLAPFLMFVPMEWLCYYLSIYKDHNPDE 337 (347)
T ss_pred HHHHHHCCCEEEEECCCCC---------------CCC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999975990899614103---------------677-----5467849999999999999999977989898
No 236
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=97.08 E-value=0.003 Score=43.96 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=60.9
Q ss_pred CCCEEEEEEECCCHHH---------HHHC-CC------CCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 4323232412340356---------7617-82------337098834889789779987899999999679958999806
Q gi|255764505|r 259 EGQKLKGIITEGDIFR---------NFHK-DL------NTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDD 322 (341)
Q Consensus 259 ~~~~liGIITdgDlrR---------~l~~-~~------~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~ 322 (341)
++|+++=|=|--||.+ .+.+ ++ .-..+...|+..|+.+.++.....|+++|++.++.++.|||+
T Consensus 205 k~GeiVQvGTPdeIL~NPaneyVe~F~~~~dl~qv~~P~~~~i~~~~~~~~i~~t~~~gp~~Al~Lm~~~~~~s~yvv~~ 284 (372)
T TIGR01186 205 KAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVLSPDAERIAKRMNTVPITKTADKGPRSALKLMRDERVDSLYVVDR 284 (372)
T ss_pred ECCCEEEECCCHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 06867884284687428806799987375115752388889999652773268658988789999998659717999972
Q ss_pred CCEEEEEEEHHHHHHC
Q ss_conf 9848999858889743
Q gi|255764505|r 323 CQKAIGIVHFLDLLRF 338 (341)
Q Consensus 323 ~~~lvGiIt~~DLlka 338 (341)
++++.|+|...++=++
T Consensus 285 ~~~l~G~v~~~~~~~a 300 (372)
T TIGR01186 285 QNKLVGVVDVESIKQA 300 (372)
T ss_pred CCEEEEEEEHHHHHHH
T ss_conf 8548877858899988
No 237
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.99 E-value=0.0024 Score=44.69 Aligned_cols=52 Identities=35% Similarity=0.507 Sum_probs=46.7
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHC-CCCCEEEECCCCC-EEEEEEECCCH
Q ss_conf 333321047543055100238888987410-4662000000432-32324123403
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSE-KRFGCVAVVDEGQ-KLKGIITEGDI 272 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~-~~~g~v~Vvd~~~-~liGIITdgDl 272 (341)
.+.++|.. ..+.+.++.++.+++..|.+ .+...++|+++++ +++|++|..|+
T Consensus 63 ~v~~i~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred HHHHHHCC--CCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEHHHC
T ss_conf 17886258--8467779988999999998726776256998898879989887874
No 238
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=96.94 E-value=0.0013 Score=46.53 Aligned_cols=124 Identities=23% Similarity=0.357 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HH--HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 9999999998503387888753110011112---43--333321047543055100238888987410466200000043
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTL---FV--CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG 260 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~---Ll--~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~ 260 (341)
|-|++.+|- ++..||-|.=|.+ |+ -++..|.+ +++ | ..|.++++ +-+
T Consensus 284 GsAvvaal~---------~A~~hP~l~~~~~~VvlLPDS~R~YmtK-----~~n------D--~Wl~~~Gf----l~~-- 335 (527)
T TIGR01137 284 GSAVVAALK---------VAEDHPELKEDQVIVVLLPDSIRNYMTK-----FLN------D--EWLLDNGF----LDD-- 335 (527)
T ss_pred HHHHHHHHH---------HHHHCCCCCCCCEEEEEECCCCCHHHHH-----EEC------H--HHHHHCCC----CCC--
T ss_conf 358999999---------9872678888878999846873000100-----104------3--78864587----510--
Q ss_pred CEEEE---EEECCCHHHH------HHCCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEE--------CC
Q ss_conf 23232---4123403567------6178233709883488978977998789999999967995899980--------69
Q gi|255764505|r 261 QKLKG---IITEGDIFRN------FHKDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVD--------DC 323 (341)
Q Consensus 261 ~~liG---IITdgDlrR~------l~~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD--------~~ 323 (341)
++-| ..|..|..|. ..+.+.+..+++.--+.|++++|+.++.+|+++++++.++++|||+ +.
T Consensus 336 -rldg~~e~~~~~~~~~leasttky~~~~~~~~v~~l~L~~~v~~~~t~tv~~ai~iLre~GfdQ~PVv~pga~~P~vea 414 (527)
T TIGR01137 336 -RLDGSTESLTVKDVLKLEASTTKYEDVFGNARVKDLHLPALVTVHPTETVGDAIEILREYGFDQLPVVKPGAAEPDVEA 414 (527)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf -1157761345444555433322255642563641566887345467640899999999748730762077888897235
Q ss_pred CEEEEEEEHHHHHHC
Q ss_conf 848999858889743
Q gi|255764505|r 324 QKAIGIVHFLDLLRF 338 (341)
Q Consensus 324 ~~lvGiIt~~DLlka 338 (341)
+++.|.++...+|++
T Consensus 415 g~v~G~v~l~~lL~~ 429 (527)
T TIGR01137 415 GKVLGSVTLRELLSA 429 (527)
T ss_pred CEEEEEEEHHHHHHH
T ss_conf 347887426778999
No 239
>PRK11573 hypothetical protein; Provisional
Probab=96.91 E-value=0.0035 Score=43.49 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=67.4
Q ss_pred HHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCC---C-CCHHHHC--CCCCE
Q ss_conf 3321047543055100238888987410466200000043232324123403567617823---3-7098834--88978
Q gi|255764505|r 221 SDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLN---T-LSVEDVM--IKNPK 294 (341)
Q Consensus 221 ~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~---~-~~v~~iM--t~~p~ 294 (341)
.+++++..++.+|+++.++.+++..|.+++...++|+|+.|...|++|--|+...+-.++. + ....++. ..+-+
T Consensus 255 ~~l~~~~~~~~fVpe~~~~~~lL~~~~~~~~h~AiVvDEyGg~~GiVTlEDilEeivGei~de~d~~~~~~~~~~~dg~~ 334 (413)
T PRK11573 255 ETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSV 334 (413)
T ss_pred HHHHHHCCCCEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEE
T ss_conf 88875147877968989099999998842863799994899888995499999998387755567643302188789739
Q ss_pred EECCCCCHHHHHHHHH
Q ss_conf 9779987899999999
Q gi|255764505|r 295 VILEDTLLTVAMQLLR 310 (341)
Q Consensus 295 ~I~~d~~i~eAl~lM~ 310 (341)
.++-..++.|.-+.+.
T Consensus 335 ~v~G~~~l~dl~~~l~ 350 (413)
T PRK11573 335 IIDGTANVREINKAFN 350 (413)
T ss_pred EEECCCCHHHHHHHHC
T ss_conf 9976779999999859
No 240
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.83 E-value=0.003 Score=43.99 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=50.2
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHH
Q ss_conf 333332104754305510023888898741046620000004323232412340356761
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFH 277 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~ 277 (341)
.+...+|.+ +--+|.+.+++..+.+.|---++..+||+|++++++|++|-.|+.+.+.
T Consensus 249 t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 249 TTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CCHHHHHCC--CCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHHHH
T ss_conf 617777426--9755425226889988887645526568837861898988999999998
No 241
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=96.83 E-value=0.0015 Score=46.10 Aligned_cols=68 Identities=28% Similarity=0.473 Sum_probs=52.8
Q ss_pred HCC-CCHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCEEEE-EHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEE
Q ss_conf 503-38788875--3110011112433333210475430551-002388889874104662000000432323241
Q gi|255764505|r 196 SRN-FSENDFYV--LHPGGKLGTLFVCASDVMHSGDSIPLVK-IGCPLIDAITILSEKRFGCVAVVDEGQKLKGII 267 (341)
Q Consensus 196 ~~~-~t~~df~~--~HPgG~lg~~Ll~V~DiM~~~~~ip~V~-~~~si~eal~~m~~~~~g~v~Vvd~~~~liGII 267 (341)
.+| ||--|..+ +--|| |.+-..|+|+|..+.. .++ ++.-+-||.+.|.++++..++|+|++|+++|++
T Consensus 200 ~~Gv~tDGD~RR~l~~~g~--~~l~~~v~~~mT~~p~--~~~n~~~~l~~A~~~l~~~kI~~~~vvdd~nkl~G~~ 271 (272)
T TIGR00393 200 LKGVFTDGDLRRVLALLGG--GALKKEVKDFMTLGPK--TLKNSDELLVEALEFLKKRKITSLVVVDDENKLLGVL 271 (272)
T ss_pred EEEEEECCHHHHHHHHHCC--HHCCCCHHHHCCCCCE--EEECHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE
T ss_conf 4678714659999988166--0002312221068881--3401456899999998727942899983897178753
No 242
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0049 Score=42.46 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=50.3
Q ss_pred HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHH
Q ss_conf 33333210475430551002388889874104662000000432323241234035676
Q gi|255764505|r 218 VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF 276 (341)
Q Consensus 218 l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l 276 (341)
.+++|+|.+ +...|.+++...|+.+.+.++.+-.+||+|++++++|++|.-|+...+
T Consensus 196 ~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi 252 (451)
T COG2239 196 ELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI 252 (451)
T ss_pred HHHHHHHCC--CCEEECCCCCHHHHHHHHHHHCCEECCEECCCCCEEEEEEHHHHHHHH
T ss_conf 689987243--562436557879999999982870153577898463255499999999
No 243
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=96.65 E-value=0.0013 Score=46.57 Aligned_cols=57 Identities=30% Similarity=0.372 Sum_probs=50.8
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 333321047543055100238888987410466200000043232324123403567
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
++.+.|.+.+++.++.++.+..||.+.|.+++...+||+|++++|+|++|-.|+.+.
T Consensus 142 ~~~~~~~~~~~lvt~~~~~~~~ea~~~l~~~kieklpvvd~~g~L~glit~kDi~k~ 198 (467)
T pfam00478 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKA 198 (467)
T ss_pred CCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEEHHHHHHH
T ss_conf 320110135542772488998999999997556415444678837888874346774
No 244
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=96.63 E-value=0.082 Score=33.52 Aligned_cols=142 Identities=21% Similarity=0.232 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHCCCEEECCCEEEEE--ECCC
Q ss_conf 366999999998279959999338137999999999875088611012-----330232023012104707898--3687
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVH-----AAEASHGDLGMITRDDLIIVL--SWSG 122 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~-----~~ea~Hgdlg~i~~~Dv~i~i--S~SG 122 (341)
...+.+..+...+.+ ..+|.|=|--+.||-.-|=+|--+ -|+| ++|.=||=+-.|.+|==||+| ++||
T Consensus 468 ~~~i~~~A~~~~~~~-~flFlGRg~~YPiALEGALKLKEI----SYIHAEgYpAGElKHGPiALid~~~PVva~ap~~~G 542 (628)
T TIGR01135 468 DEKIAELAEKYADKR-NFLFLGRGLGYPIALEGALKLKEI----SYIHAEGYPAGELKHGPIALIDEGLPVVAIAPKDSG 542 (628)
T ss_pred CHHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHHHHH----HHHHHCCCCCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 668999999973168-738983557770232354466565----456524544553456850033188708998278898
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 8078876666632045627998447-889545214533768861554324752178999999999999999998503387
Q gi|255764505|r 123 SSDELKAILYYARRFSIPLIAITSE-NKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSE 201 (341)
Q Consensus 123 ~t~e~~~~~~~~k~~~~~iI~iT~~-~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~ 201 (341)
==..++.-++-.|.||+++|+++.. .....+..+|..+.+|...| =++|-.+- .+.++-||.-+...||...
T Consensus 543 l~~K~~SNv~Ev~ARga~vi~~~~~~~~~~~~~~~d~~i~~P~~~~----~~~P~~~l---~iplQLlAYhiA~~kG~Dv 615 (628)
T TIGR01135 543 LLEKTKSNVEEVKARGARVIVLASEDDAELIAAIADDIIKLPEVEE----LLAPIVYL---TIPLQLLAYHIALAKGTDV 615 (628)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCC----CCCCHHHH---HHHHHHHHHHHHHHHCCCC
T ss_conf 5077788899887269638998257753243110545888468886----30416676---7999999999999708643
Q ss_pred HH
Q ss_conf 88
Q gi|255764505|r 202 ND 203 (341)
Q Consensus 202 ~d 203 (341)
++
T Consensus 616 Dk 617 (628)
T TIGR01135 616 DK 617 (628)
T ss_pred CC
T ss_conf 68
No 245
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=96.62 E-value=0.028 Score=36.89 Aligned_cols=143 Identities=22% Similarity=0.219 Sum_probs=77.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHH---CCCCCCCCCCCCHH--HHCCCEEECC-CEEEEEECCCCCHHHHHHHHHHHCC--
Q ss_conf 59999338137999999999875---08861101233023--2023012104-7078983687807887666663204--
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLAS---TGTPSFFVHAAEAS--HGDLGMITRD-DLIIVLSWSGSSDELKAILYYARRF-- 137 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s---~G~~a~~~~~~ea~--Hgdlg~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~-- 137 (341)
.|+..|+|+|.+=-+=+..-|.. -+...+|+.-.|.. +.-|..+.+. -++|.+|+||.|.|++.-+..+++.
T Consensus 132 ~VV~IGIGGS~LGp~~~~~AL~~~~~~~~~i~FvsNvD~~~l~~~l~~ldpe~TLfiv~SKSftT~ETl~N~~~a~~wl~ 211 (525)
T PRK00179 132 DVVNIGIGGSDLGPRAVIEALRPYFDNLLRVHFVSNVDPTYIAEVLKKLDPKTTLFIVISKSGTTTETATNFRIARDWLL 211 (525)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 38996656601769999999986466984179967888689999997289223389996698782889999999999999
Q ss_pred --C-------CCEEEEECCCCCHHHHCCCC----EEEEEEECCCCCCCCCHHHHHHHHHHHH-H----HHHHHHHHHCCC
Q ss_conf --5-------62799844788954521453----3768861554324752178999999999-9----999999985033
Q gi|255764505|r 138 --S-------IPLIAITSENKSVVACHADI----VLTLPKEPESCPHGLAPTTSAIMQLAIG-D----ALAIALLESRNF 199 (341)
Q Consensus 138 --~-------~~iI~iT~~~~S~la~~ad~----~l~~~~~~Ea~~~~~aPt~Stt~~l~~~-D----alav~l~~~~~~ 199 (341)
+ -..|+||+++...+..-.+- .+.+|.. =...+.+-........+++| | -|+-+-.--+.|
T Consensus 212 ~~~g~~~~~~~h~vavT~~~~~a~~~gi~~~~~~iF~~~d~-VGGRySvwSaVGL~~a~~~G~d~f~~lL~GA~~mD~hf 290 (525)
T PRK00179 212 KKGGKELEAAKHFVAVTDNAKGALKFGIDEEGLETFPMWDW-VGGRYSVLSAVGLLPAAAIGIDNFDELLAGAAAMDKHF 290 (525)
T ss_pred HHCCCHHHHHHHEEEECCCHHHHHHHCCCCCCCEEEECCCC-CCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 83798343655255642885789982678442407756544-67731003412079999807699999999999999998
Q ss_pred CHHHHHHHHH
Q ss_conf 8788875311
Q gi|255764505|r 200 SENDFYVLHP 209 (341)
Q Consensus 200 t~~df~~~HP 209 (341)
...++..|=|
T Consensus 291 ~~~~~~~N~p 300 (525)
T PRK00179 291 RTAPLEENPP 300 (525)
T ss_pred HCCCHHHCHH
T ss_conf 4599435879
No 246
>TIGR00400 mgtE magnesium transporter; InterPro: IPR006669 This is the MgtE family of magnesium transporters. All the archaebacterial and eukaryotic examples have two copies of the integral membrane region. This suggests that the eubacterial examples may act as dimers. Members of this family probably transport Mg^2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport.
Probab=96.48 E-value=0.011 Score=39.91 Aligned_cols=126 Identities=17% Similarity=0.230 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHH-----CCCCCEEEECCCCCEEEEEEECCCHHH
Q ss_conf 878887531100111124333332104754305510023888898741-----046620000004323232412340356
Q gi|255764505|r 200 SENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILS-----EKRFGCVAVVDEGQKLKGIITEGDIFR 274 (341)
Q Consensus 200 t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~-----~~~~g~v~Vvd~~~~liGIITdgDlrR 274 (341)
..-....++|..+-|+. |.. +...+.++-++.+++..+. ...+....+.|+..++.|++.-.|+.
T Consensus 124 ~~~~~~~~~~~~~~g~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 193 (460)
T TIGR00400 124 KAVNLLLGYPPDSAGRI-------LTT--EYVWLKEDYTVGDALDYLRRVAETAEDIYTLYVTNESKRLTGVLSLRDLI- 193 (460)
T ss_pred HHHHHHHCCCCCCCCCE-------EEE--EEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHH-
T ss_conf 78888734785323420-------000--00111210015788998888765542102457633410220001123333-
Q ss_pred HHHCCCCCCCHHHHCCCCCEEECCCCCHHH-HHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf 761782337098834889789779987899-9999996799589998069848999858889743
Q gi|255764505|r 275 NFHKDLNTLSVEDVMIKNPKVILEDTLLTV-AMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 275 ~l~~~~~~~~v~~iMt~~p~~I~~d~~i~e-Al~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
. .-.+..+.++|.+..+.+.....-.+ ....++++.+..+|++|++++++|+++..|++..
T Consensus 194 --~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~p~~~~~~~~~g~~~~dd~~~~ 255 (460)
T TIGR00400 194 --L-AKPEEYLGDLLFPDGVSVDGLNDEEEDVARLIEKYDFLAVPVVDNEGRLVGIVTVDDILDV 255 (460)
T ss_pred --H-CCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHHH
T ss_conf --0-3505677665421001352045404678988764021020013167716875423468898
No 247
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.03 E-value=0.0077 Score=41.03 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=45.3
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC
Q ss_conf 333321047543055100238888987410466200000043232324123403567617
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK 278 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~ 278 (341)
...+.|.+ ..+++.+++++.|++..+.+.+.. +|++++|+++|+||-+++.+++..
T Consensus 326 ~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~--~~v~~~g~l~G~i~~~~~l~~l~g 381 (382)
T TIGR03415 326 QEVESLEA--APTVINPDTLMRDVLAARHRTGGA--ILLVENGRIVGVIGDDNIYHALLG 381 (382)
T ss_pred CCHHHHCC--CCCEECCCCCHHHHHHHHHHCCCC--EEEECCCEEEEEEEHHHHHHHHHC
T ss_conf 30223125--773338989399999999858998--099059959999868999998627
No 248
>KOG2118 consensus
Probab=95.39 E-value=0.042 Score=35.64 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=86.5
Q ss_pred HHHHHHHHCCCCCCEEEEEHHHHH-HHHHHHHCCCCCEEEECCCC--CEEEEEEECCCHHHHHH--CCCCCCCHHHHCCC
Q ss_conf 433333210475430551002388-88987410466200000043--23232412340356761--78233709883488
Q gi|255764505|r 217 FVCASDVMHSGDSIPLVKIGCPLI-DAITILSEKRFGCVAVVDEG--QKLKGIITEGDIFRNFH--KDLNTLSVEDVMIK 291 (341)
Q Consensus 217 Ll~V~DiM~~~~~ip~V~~~~si~-eal~~m~~~~~g~v~Vvd~~--~~liGIITdgDlrR~l~--~~~~~~~v~~iMt~ 291 (341)
-+.++|+|.+.+++-....+..+. +......+.++..++|.+.+ +++.|.+.-.+++ .+. ..+...++.+.+-+
T Consensus 203 ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~-~~~~~~~~~~~~v~~~~~~ 281 (498)
T KOG2118 203 EKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLR-LLQVEVPLEPLPVSESALL 281 (498)
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCCEEHHHHHHHHHH-HCCCCCCCCCCHHHHHHHC
T ss_conf 999887306144430011002101788888876587600003666520000444331233-2043345663003455412
Q ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHH
Q ss_conf 97897799878999999996799589998069848999858889
Q gi|255764505|r 292 NPKVILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDL 335 (341)
Q Consensus 292 ~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DL 335 (341)
....++++++..+.++.|++.+-+.+.|+ +..--+++++..|+
T Consensus 282 ~l~~vp~~~~~~~~l~~~~~~~~H~~~v~-~~~~~~~~~~l~~~ 324 (498)
T KOG2118 282 RLPLVPENMPLLDLLNEFQKGKSHMAVVR-NGHVDIFVLTLEDL 324 (498)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCEEEEE-CCCCCEEEEECCCH
T ss_conf 54568874308888999873121368882-48762444641414
No 249
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.11 E-value=0.25 Score=30.07 Aligned_cols=227 Identities=20% Similarity=0.167 Sum_probs=108.7
Q ss_pred EECCCEEEEE--ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH-----HHHCCCCEEE-E---EEECCCCCCCCCHHH
Q ss_conf 2104707898--368780788766666320456279984478895-----4521453376-8---861554324752178
Q gi|255764505|r 109 ITRDDLIIVL--SWSGSSDELKAILYYARRFSIPLIAITSENKSV-----VACHADIVLT-L---PKEPESCPHGLAPTT 177 (341)
Q Consensus 109 i~~~Dv~i~i--S~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~-----la~~ad~~l~-~---~~~~Ea~~~~~aPt~ 177 (341)
+.++..++.| |.||.|. ++.++..+-+.-.-.|-|-+..-|. |.+.--++|. + |--.=+....++|.-
T Consensus 24 I~~gef~vliGpSGsGKTT-tLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L 102 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTT-TLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL 102 (309)
T ss_pred ECCCEEEEEECCCCCCHHH-HHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 6597289998789975787-999996055888853898990446588899987533542221567763598778761554
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-H--HHHHHHHHHCCCCC-----CEE--EEE--HHHHHHHHHH
Q ss_conf 9999999999999999985033878887531100111-1--24333332104754-----305--510--0238888987
Q gi|255764505|r 178 SAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLG-T--LFVCASDVMHSGDS-----IPL--VKI--GCPLIDAITI 245 (341)
Q Consensus 178 Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg-~--~Ll~V~DiM~~~~~-----ip~--V~~--~~si~eal~~ 245 (341)
.--- =.=.+.-+-+||+.-|+.+++|+.--|.--=| + +.=-++-+- ...+ -|+ ++| -..+++-+..
T Consensus 103 ~~w~-k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA-adP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 103 LGWD-KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-ADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred CCCC-HHHHHHHHHHHHHHHCCCHHHHHHCCCHHCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 1779-899999999999984989789732092221862135888999974-19886863488554476549999999999
Q ss_pred HH-CCCCCEEEECCC---------------CCEEEEEEECCCH--------HHHH-HC------CCCCCCHHHHCCCCCE
Q ss_conf 41-046620000004---------------3232324123403--------5676-17------8233709883488978
Q gi|255764505|r 246 LS-EKRFGCVAVVDE---------------GQKLKGIITEGDI--------FRNF-HK------DLNTLSVEDVMIKNPK 294 (341)
Q Consensus 246 m~-~~~~g~v~Vvd~---------------~~~liGIITdgDl--------rR~l-~~------~~~~~~v~~iMt~~p~ 294 (341)
+. +.+.-.++|+.+ +|+++-.=|-.++ .+.+ .. .+...++.+.|.+.+.
T Consensus 181 lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~ 260 (309)
T COG1125 181 LQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP 260 (309)
T ss_pred HHHHHCCEEEEEECCHHHHHHHHCEEEEECCCEEEEECCHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 99985987999935788988643248985187289867889987285288999984666310122223447776424664
Q ss_pred ----EECCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHC
Q ss_conf ----97799878999999996799589998069848999858889743
Q gi|255764505|r 295 ----VILEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRF 338 (341)
Q Consensus 295 ----~I~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlka 338 (341)
.+.....-.+++..+.......+||||++|+++|.+|..+++..
T Consensus 261 ~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 261 ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 567764410445899999986687246788799967658879987523
No 250
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=94.68 E-value=0.098 Score=32.97 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCC---CCCCHHHHCCC--CCEEEC
Q ss_conf 2104754305510023888898741046620000004323232412340356761782---33709883488--978977
Q gi|255764505|r 223 VMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDL---NTLSVEDVMIK--NPKVIL 297 (341)
Q Consensus 223 iM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~---~~~~v~~iMt~--~p~~I~ 297 (341)
+++-..+.-+|++.+++.+-+..|.+++-...+|+||.|.+.|++|--|+..-+-.++ .+....++-.. .-+.++
T Consensus 270 ~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iid 349 (423)
T COG4536 270 ILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIID 349 (423)
T ss_pred HHHHHCCCEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 99874487456899928999999997251279998246767766469999999854332336643310023568748982
Q ss_pred CCCCHHHHHHHH
Q ss_conf 998789999999
Q gi|255764505|r 298 EDTLLTVAMQLL 309 (341)
Q Consensus 298 ~d~~i~eAl~lM 309 (341)
-+.++.|.-+.|
T Consensus 350 Gs~~iRdlNr~l 361 (423)
T COG4536 350 GSANVRDLNRAL 361 (423)
T ss_pred CCCCHHHHHHHC
T ss_conf 887589988861
No 251
>KOG2550 consensus
Probab=93.26 E-value=0.081 Score=33.56 Aligned_cols=61 Identities=26% Similarity=0.308 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHH
Q ss_conf 112433333210475430551002388889874104662000000432323241234035676
Q gi|255764505|r 214 GTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF 276 (341)
Q Consensus 214 g~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l 276 (341)
...-+.+.|+|.+.. .+...+.++.++=.++.+++.|-+||+|++++++-+++-.||.|.-
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550 167 EDNSLLVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred HCCCCHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEEEEEHHHHHHHC
T ss_conf 345511243303443--0144446677889998763148652343677623343334566502
No 252
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=91.42 E-value=0.34 Score=29.05 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=86.8
Q ss_pred HHH-HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECC-CHHHHHHC-----------
Q ss_conf 111-12433333210475430551002388889874104662000000432323241234-03567617-----------
Q gi|255764505|r 212 KLG-TLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEG-DIFRNFHK----------- 278 (341)
Q Consensus 212 ~lg-~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdg-DlrR~l~~----------- 278 (341)
-.| -++.+++++|.+ ++-.++.+..-+++...+.+......++++.+|.|.||+|-. -+|-.+.+
T Consensus 140 ~~G~d~ft~~~~~~~~--~~~~~~~~~~P~~~f~~l~~~~~~~a~~~~~dG~l~G~l~r~Ga~ra~~y~Pa~d~~Grlr~ 217 (476)
T TIGR01303 140 LEGVDRFTQVEEVMST--DLVTLPADLEPREAFDLLEEASRKLAPVVDADGSLAGILTRTGALRATLYTPAVDAAGRLRI 217 (476)
T ss_pred CCCHHHHHHHHHHHHH--HHEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf 1000456788877754--32020367888899999874101201111057725554411430000001555256774677
Q ss_pred ----CCC---CCCHHHHCCC--CCEEE----CCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCCC
Q ss_conf ----823---3709883488--97897----79987899999999679958999806984899985888974368
Q gi|255764505|r 279 ----DLN---TLSVEDVMIK--NPKVI----LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340 (341)
Q Consensus 279 ----~~~---~~~v~~iMt~--~p~~I----~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkagi 340 (341)
+++ ..+.+.+..- +...| .......+|++....-.. .+|++- |.++--=-..||+++|-
T Consensus 218 ~aa~GinGd~~~~~~~l~~aG~d~lv~dtahGhq~~~~~a~k~~~~ld~-~~P~~a--Gn~v~a~G~rdl~~aGa 289 (476)
T TIGR01303 218 GAAVGINGDVEGKAKALLDAGVDVLVIDTAHGHQEKMISAVKAVRALDL-RVPIVA--GNVVSAEGVRDLVEAGA 289 (476)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCC-CCCEEE--CCEEECCCHHHHHHCCC
T ss_conf 6652024432378999986688589983465406899999999986045-586542--42241100488874476
No 253
>KOG0474 consensus
Probab=91.41 E-value=0.18 Score=30.98 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHH-HHHHH------HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 03387888753110-01111------243333321047543055100238888987410466200000043232324123
Q gi|255764505|r 197 RNFSENDFYVLHPG-GKLGT------LFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITE 269 (341)
Q Consensus 197 ~~~t~~df~~~HPg-G~lg~------~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITd 269 (341)
+.++-+||+.--|. -.++. .-+-...+|.+. =++|.+++++..+...+.+-++.+++|+++.++.+|++|.
T Consensus 662 ~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~s--PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR 739 (762)
T KOG0474 662 RKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPS--PYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTR 739 (762)
T ss_pred HCCCHHHHHHCCCCHHHHHCCHHHHHHCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEH
T ss_conf 03787776441785565541667686430553346999--9654743105789999997350158985177863667756
Q ss_pred CCHHHH
Q ss_conf 403567
Q gi|255764505|r 270 GDIFRN 275 (341)
Q Consensus 270 gDlrR~ 275 (341)
.|++|.
T Consensus 740 ~D~~~~ 745 (762)
T KOG0474 740 KDLARY 745 (762)
T ss_pred HHHHHH
T ss_conf 643467
No 254
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=90.81 E-value=1.1 Score=25.24 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=35.8
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCC-CEEEEEEECCCH
Q ss_conf 3055100238888987410466200000043-232324123403
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEG-QKLKGIITEGDI 272 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~-~~liGIITdgDl 272 (341)
...+.|+.|+.||...|.+++...+||+|.+ |...-++|-..+
T Consensus 52 lv~i~P~~sL~da~~~l~~~~ihrlPvid~~~~~~~~ilt~~~i 95 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRI 95 (98)
T ss_pred HEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHE
T ss_conf 24448761299999999867875052164799965899963020
No 255
>KOG0476 consensus
Probab=89.96 E-value=0.29 Score=29.58 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCE
Q ss_conf 999999999999999985-----033878887531100111124333332104754305510023888898741046620
Q gi|255764505|r 179 AIMQLAIGDALAIALLES-----RNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGC 253 (341)
Q Consensus 179 tt~~l~~~Dalav~l~~~-----~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~ 253 (341)
-+....+.+|+|-.|.-. -.++.--|.---|.++.+.--++|+|+|.+ ++++|..+.+.+|.-+.+..+.+..
T Consensus 544 VmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~ 621 (931)
T KOG0476 544 VMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRS 621 (931)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHEEECCCCCCCCCCCCCCCEEEEEEEEECCC--CCEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 99999999999988483053430243467767888975663168874300124--5204533573999999997375320
Q ss_pred EEECCCC--CEEEEEEECCCH
Q ss_conf 0000043--232324123403
Q gi|255764505|r 254 VAVVDEG--QKLKGIITEGDI 272 (341)
Q Consensus 254 v~Vvd~~--~~liGIITdgDl 272 (341)
.|++|+. .-|+|.+.-..+
T Consensus 622 ~PlV~s~esmiLlGSV~R~~L 642 (931)
T KOG0476 622 FPLVESKESMILLGSVARRYL 642 (931)
T ss_pred CCCCCCCCCCEEEEHHHHHHH
T ss_conf 144358644233016379999
No 256
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.74 E-value=1.2 Score=25.07 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=5.0
Q ss_pred CEEEEECCCHHH
Q ss_conf 599993381379
Q gi|255764505|r 66 RVVITGIGKSGH 77 (341)
Q Consensus 66 rv~~~GvG~S~~ 77 (341)
||+|.|+|+||.
T Consensus 10 ~ih~iGigG~Gm 21 (459)
T PRK00421 10 RIHFVGIGGIGM 21 (459)
T ss_pred EEEEEEECHHHH
T ss_conf 899998668889
No 257
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=88.02 E-value=2.4 Score=22.91 Aligned_cols=145 Identities=21% Similarity=0.316 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHH-HCCCCCC-----CCCCCC--H---HHH-CCCE-----EECCC
Q ss_conf 6999999998279-95999933813799999999987-5088611-----012330--2---320-2301-----21047
Q gi|255764505|r 52 QFHCAVEKIKAIK-GRVVITGIGKSGHIGSKLASTLA-STGTPSF-----FVHAAE--A---SHG-DLGM-----ITRDD 113 (341)
Q Consensus 52 ~~~~av~~i~~~~-grv~~~GvG~S~~ia~k~a~tl~-s~G~~a~-----~~~~~e--a---~Hg-dlg~-----i~~~D 113 (341)
+|..+.+.|...+ -.++|++-|.+..=+.++...|. .+|++-+ +.|.+- + .-| +-|. +..-|
T Consensus 86 A~~~Ia~~L~~~~p~~~~fy~Sgr~snE~~yl~q~far~~GTnN~~~~s~~Ch~ss~~~l~~t~G~g~~t~~~~D~~~ad 165 (574)
T cd02767 86 AFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDFEHTD 165 (574)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 99999999973298869998427861489999999999858998888743058899999999709898898988997588
Q ss_pred EEEEE-ECCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCHHHH----------------CCCCEEEEEEECCCCCCCCCH
Q ss_conf 07898-3687807-88766666320456279984478895452----------------145337688615543247521
Q gi|255764505|r 114 LIIVL-SWSGSSD-ELKAILYYARRFSIPLIAITSENKSVVAC----------------HADIVLTLPKEPESCPHGLAP 175 (341)
Q Consensus 114 v~i~i-S~SG~t~-e~~~~~~~~k~~~~~iI~iT~~~~S~la~----------------~ad~~l~~~~~~Ea~~~~~aP 175 (341)
+++.+ +|-|++. -....+..+|++|+++|.|--.+.-.|.+ .||..|.+...
T Consensus 166 ~i~~~G~Np~~~hP~~~~~l~~ak~~GakiIvidP~re~gl~rf~~p~~~~~~lt~~t~~Ad~~l~irpG---------- 235 (574)
T cd02767 166 LIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIG---------- 235 (574)
T ss_pred EEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHCCCCCCHHHCEEECCCCC----------
T ss_conf 8999777867868899999999998889699988975056664157554200034430544044056889----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHH
Q ss_conf 789999999999999999985----033878887531100
Q gi|255764505|r 176 TTSAIMQLAIGDALAIALLES----RNFSENDFYVLHPGG 211 (341)
Q Consensus 176 t~Stt~~l~~~Dalav~l~~~----~~~t~~df~~~HPgG 211 (341)
+= +++..+++=.|.+. .++--.+|...|--|
T Consensus 236 -tD----~Al~~gi~~~lie~d~~~~~~~D~~FI~~~t~G 270 (574)
T cd02767 236 -GD----IALLNGMAKHLIERDDEPGNVLDHDFIAEHTSG 270 (574)
T ss_pred -CH----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf -58----999999999999736545786688999874467
No 258
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=87.88 E-value=0.27 Score=29.82 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=63.2
Q ss_pred HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCC-------CCCHHHHCCC
Q ss_conf 333321047543055100238888987410466200000043232324123403567617823-------3709883488
Q gi|255764505|r 219 CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLN-------TLSVEDVMIK 291 (341)
Q Consensus 219 ~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~-------~~~v~~iMt~ 291 (341)
.++++.+| ..+|++...+.-.++.+...+...++|+|+-|-.-|.+|--|+...+-.++. ...+..+ .+
T Consensus 134 ~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l-s~ 209 (293)
T COG4535 134 DIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL-SR 209 (293)
T ss_pred CHHHHCCC---CEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHH-CC
T ss_conf 38886155---243466126999999998504726999822577201677999999985433101350554446763-47
Q ss_pred CCEEECCCCCHHHHHHHHHH
Q ss_conf 97897799878999999996
Q gi|255764505|r 292 NPKVILEDTLLTVAMQLLRQ 311 (341)
Q Consensus 292 ~p~~I~~d~~i~eAl~lM~~ 311 (341)
.-+.|..=+.+.+--+.|..
T Consensus 210 ~~~~vrALT~IedFN~~F~t 229 (293)
T COG4535 210 HTWRVRALTEIEDFNEAFGT 229 (293)
T ss_pred CCEEEEECCCHHHHHHHHCC
T ss_conf 72699844608998998668
No 259
>KOG0476 consensus
Probab=87.23 E-value=0.31 Score=29.33 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CCEEEEEEEHHHH
Q ss_conf 7098834889789779987899999999679958999806--9848999858889
Q gi|255764505|r 283 LSVEDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVVDD--CQKAIGIVHFLDL 335 (341)
Q Consensus 283 ~~v~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVVD~--~~~lvGiIt~~DL 335 (341)
..|+++|.++.++|..+.+..|.-+..+..+++.+|+||+ +.-++|-|....|
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L 642 (931)
T KOG0476 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYL 642 (931)
T ss_pred EEEEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHH
T ss_conf 8743001245204533573999999997375320144358644233016379999
No 260
>KOG2446 consensus
Probab=87.21 E-value=1.1 Score=25.27 Aligned_cols=86 Identities=26% Similarity=0.257 Sum_probs=55.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHC---CCCCCCCCCCCHHHHC--CCEEECC-CEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 599993381379999999998750---8861101233023202--3012104-707898368780788766666320456
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLAST---GTPSFFVHAAEASHGD--LGMITRD-DLIIVLSWSGSSDELKAILYYARRFSI 139 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~---G~~a~~~~~~ea~Hgd--lg~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~~~ 139 (341)
-|+=+|+|+|.+=-+-.+.-|.-. |...+|+.-.|..|-+ +-.+.|+ .++|.+|+++.|.|++..++.+|+.-.
T Consensus 152 dVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLfiVaSKTftT~ETitnaetak~w~~ 231 (546)
T KOG2446 152 DVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLFIVASKTFTTAETITNAETAKEWFL 231 (546)
T ss_pred EEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 68994346544342999986235788884179871688051899985349653599999567585888863999999998
Q ss_pred CEEEEECCCCCHHHHC
Q ss_conf 2799844788954521
Q gi|255764505|r 140 PLIAITSENKSVVACH 155 (341)
Q Consensus 140 ~iI~iT~~~~S~la~~ 155 (341)
. + +...|.+|+.
T Consensus 232 a--~--~~d~s~VAkh 243 (546)
T KOG2446 232 A--K--AKDPSAVAKH 243 (546)
T ss_pred H--H--CCCHHHHHHH
T ss_conf 5--1--6784789999
No 261
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.96 E-value=1.1 Score=25.45 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=72.5
Q ss_pred HHHHHHHHH-HCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 887666663-2045627998447889545214533768861554324752178999999999999999998503387888
Q gi|255764505|r 126 ELKAILYYA-RRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDF 204 (341)
Q Consensus 126 e~~~~~~~~-k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df 204 (341)
.+-+-+..+ |+.|.++|-+|-.-+-.+ +++|-....... | ...+++... + ..--.+||
T Consensus 173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~-kLadri~vm~~G-~--i~Q~~~P~~----------i-------l~~Pan~F 231 (309)
T COG1125 173 QLQEEIKELQKELGKTIVFVTHDIDEAL-KLADRIAVMDAG-E--IVQYDTPDE----------I-------LANPANDF 231 (309)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCHHHHH-HHHCEEEEECCC-E--EEEECCHHH----------H-------HHCCCHHH
T ss_conf 9999999999985987999935788988-643248985187-2--898678899----------8-------72852889
Q ss_pred HHHHHHHH-HH-HH--HHHHHHHHCCCCCC--EEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 75311001-11-12--43333321047543--0551002388889874104662000000432323241234035
Q gi|255764505|r 205 YVLHPGGK-LG-TL--FVCASDVMHSGDSI--PLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 205 ~~~HPgG~-lg-~~--Ll~V~DiM~~~~~i--p~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
...-=|.+ .+ ++ +..|.|.|.+.... --+.....-.+++..+...+...++|+|++|+++|.+|..|+.
T Consensus 232 V~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~ 306 (309)
T COG1125 232 VEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLL 306 (309)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHH
T ss_conf 999846663101222234477764246645677644104458999999866872467887999676588799875
No 262
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=86.72 E-value=0.76 Score=26.48 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=22.1
Q ss_pred CEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHH
Q ss_conf 30551002388889874104662000000432323241234035676
Q gi|255764505|r 230 IPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNF 276 (341)
Q Consensus 230 ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l 276 (341)
++.+.+++++.+.+..+.+...- ++|+|++++++|+++.+.+..++
T Consensus 337 ~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 337 VLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCC-EEEECCCCCEEEEECHHHHHHHH
T ss_conf 33567642488999987528985-46885788577786388999997
No 263
>KOG0475 consensus
Probab=86.41 E-value=0.68 Score=26.84 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=30.9
Q ss_pred EEECCC-CCHHHHHHHHHHCCCCEEEEE--ECCCEEEEEEEHHHHHH
Q ss_conf 897799-878999999996799589998--06984899985888974
Q gi|255764505|r 294 KVILED-TLLTVAMQLLRQHNISVLMVV--DDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 294 ~~I~~d-~~i~eAl~lM~~~kI~~LpVV--D~~~~lvGiIt~~DLlk 337 (341)
.++..+ .++.|...+|++...+-.||| ++.++++|.+...|+.-
T Consensus 559 ~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~ 605 (696)
T KOG0475 559 IVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFL 605 (696)
T ss_pred EECCCCCEEHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECHHHHHH
T ss_conf 12055651689998888624427852797156422678871578889
No 264
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=82.60 E-value=1.6 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=15.3
Q ss_pred HHHHHHCCCCEEEEECCCHH
Q ss_conf 99998279959999338137
Q gi|255764505|r 57 VEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 57 v~~i~~~~grv~~~GvG~S~ 76 (341)
.++|.+++-=|+++|.|=|.
T Consensus 2 ~~li~~s~~ivvlTGAGISt 21 (260)
T cd01409 2 QDFVARSRRLLVLTGAGIST 21 (260)
T ss_pred HHHHHHCCCEEEEECCEECH
T ss_conf 78895199799990412015
No 265
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=82.08 E-value=2.2 Score=23.09 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=7.6
Q ss_pred HCCCCEEEEECCCH
Q ss_conf 27995999933813
Q gi|255764505|r 62 AIKGRVVITGIGKS 75 (341)
Q Consensus 62 ~~~grv~~~GvG~S 75 (341)
+++--|++||.|=|
T Consensus 3 ~sk~ivvlTGAGiS 16 (222)
T cd01413 3 KSRKTVVLTGAGIS 16 (222)
T ss_pred CCCEEEEEECCHHH
T ss_conf 78969999295110
No 266
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=82.05 E-value=2 Score=23.51 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEE
Q ss_conf 04707898368780788766666320456279984478895452145337
Q gi|255764505|r 111 RDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVL 160 (341)
Q Consensus 111 ~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l 160 (341)
+-|++|.+-.|+...-...+...+++.|++++-| +...+++...||++|
T Consensus 155 ~aDlllviGTSl~V~Paa~l~~~a~~~g~~vvii-N~~~T~~d~~ad~~i 203 (206)
T cd01410 155 RADLFLCLGTSLQVTPAANLPLKAARAGGRLVIV-NLQPTPKDKLADLVI 203 (206)
T ss_pred HCCEEEEECCCCEECCHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCEEE
T ss_conf 4998999767955522767899999759909998-999999984224898
No 267
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=81.46 E-value=1.6 Score=24.07 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=37.7
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEE
Q ss_conf 2104707898368780788766666320456279984478895452145337688
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP 163 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~ 163 (341)
+.+-|++|.+-.|....-...+...++++|+++|-|. ....+..+.+|++|.-+
T Consensus 162 ~~~aDlllvvGTSl~V~pa~~l~~~a~~~g~~viiIN-~~~T~~d~~ad~~i~g~ 215 (224)
T cd01412 162 LAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEIN-PEPTPLSPIADFAFRGK 215 (224)
T ss_pred HHHCCEEEEECCCCEEHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCEEEECC
T ss_conf 9719979998988555677789999997699499988-99999976358899888
No 268
>PRK09939 putative oxidoreductase; Provisional
Probab=81.14 E-value=4.6 Score=20.78 Aligned_cols=261 Identities=15% Similarity=0.170 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHHHHHHH-CCCCCC-----CCCCCC--HHHHCCCE---------EEC
Q ss_conf 6699999999827--9959999338137999999999875-088611-----012330--23202301---------210
Q gi|255764505|r 51 FQFHCAVEKIKAI--KGRVVITGIGKSGHIGSKLASTLAS-TGTPSF-----FVHAAE--ASHGDLGM---------ITR 111 (341)
Q Consensus 51 ~~~~~av~~i~~~--~grv~~~GvG~S~~ia~k~a~tl~s-~G~~a~-----~~~~~e--a~Hgdlg~---------i~~ 111 (341)
++|..+.+.|..- -.+++||.-|.+..=|-.+.+.|.+ +|+.-+ ..|.+. ++-.-+|. +..
T Consensus 129 ~Af~~Ia~~L~~l~~P~~a~FYtSgR~SNEaayl~QlfaR~~GTNN~pdCSnmCHess~v~L~~siG~G~gTv~l~D~~~ 208 (759)
T PRK09939 129 QAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEK 208 (759)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99999999983469977488983377666999999999998679983224544006789999986388876405888964
Q ss_pred CCEEEEE-ECCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHH------H
Q ss_conf 4707898-368780-7887666663204562799844788954521453376886155432475217899999------9
Q gi|255764505|r 112 DDLIIVL-SWSGSS-DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQ------L 183 (341)
Q Consensus 112 ~Dv~i~i-S~SG~t-~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~------l 183 (341)
-|+++.| +|-|+. +-++..++.+|++|++||.|--.+.--|.++.+-.- ..|.-..+-.+.++...| +
T Consensus 209 aD~I~viG~Np~tnHPrml~~L~~a~~rGakII~iNPl~E~gL~rf~~Pq~----p~~~l~~~~t~iad~~~qvr~GgD~ 284 (759)
T PRK09939 209 CDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQN----PFEMLTNSETQLASAYYNVRIGGDM 284 (759)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCC----CHHHCCCCCCHHHHHCCCCCCCCHH
T ss_conf 988999845857458899999999998799589989975144554047554----1222156653343302587888379
Q ss_pred HHHHHHHHHHHHHC---------CCCHHHHHHHHHHHH--------------------HH-HHHHHHHHHHCCCCCCEEE
Q ss_conf 99999999999850---------338788875311001--------------------11-1243333321047543055
Q gi|255764505|r 184 AIGDALAIALLESR---------NFSENDFYVLHPGGK--------------------LG-TLFVCASDVMHSGDSIPLV 233 (341)
Q Consensus 184 ~~~Dalav~l~~~~---------~~t~~df~~~HPgG~--------------------lg-~~Ll~V~DiM~~~~~ip~V 233 (341)
|+..+++=.|.+.. ++=-.+|...|-.|- |- ..+.++.++....++..++
T Consensus 285 All~gi~k~lie~~~~a~~~~~~~~~D~~FI~~~T~Gfe~~~~~v~~~~w~~ie~~sGl~~~~I~~aA~~ya~a~~~i~~ 364 (759)
T PRK09939 285 ALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEWKDIERISGLSQTQIAELADAYAAAERTIIC 364 (759)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999999666422123566747199998865329999999850899999988797999999999999747874899
Q ss_pred ---------EEHHHHHHHHHHH------HCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCC-CCCEEEC
Q ss_conf ---------1002388889874------10466200000043232324123403567617823370988348-8978977
Q gi|255764505|r 234 ---------KIGCPLIDAITIL------SEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMI-KNPKVIL 297 (341)
Q Consensus 234 ---------~~~~si~eal~~m------~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt-~~p~~I~ 297 (341)
+-..++++.+... -+.+.|..||-..+ .+.|-=|-|-..+. ...+. ...++.-. ..| -.
T Consensus 365 w~MGiTQH~~Gv~nV~~i~NL~Ll~GnIGrpGaG~~PvRGHS-NVQG~rtmGi~e~p-~~~~~-~~l~~~~gf~~P--~~ 439 (759)
T PRK09939 365 YGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHS-NVQGDRTVGITEKP-SAEFL-ARLGERYGFTPP--HA 439 (759)
T ss_pred EECCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC-CHHHH-HHHHHHHCCCCC--CC
T ss_conf 850420002168999999999997424799985646666886-77787657887899-99999-999999689998--65
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 99878999999996799589998
Q gi|255764505|r 298 EDTLLTVAMQLLRQHNISVLMVV 320 (341)
Q Consensus 298 ~d~~i~eAl~lM~~~kI~~LpVV 320 (341)
+.-++.++++.|.+.+++.+.++
T Consensus 440 ~G~~~ve~i~A~~~G~ik~~~~l 462 (759)
T PRK09939 440 PGHAAIASMQAICTGQARALICM 462 (759)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 54369999999974987689994
No 269
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.62 E-value=4.4 Score=20.92 Aligned_cols=75 Identities=28% Similarity=0.350 Sum_probs=39.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCH--------HHH----------CCCEEECCCEEEEEECCCC-
Q ss_conf 799599993381379999999998750886110123302--------320----------2301210470789836878-
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEA--------SHG----------DLGMITRDDLIIVLSWSGS- 123 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea--------~Hg----------dlg~i~~~Dv~i~iS~SG~- 123 (341)
-| ||.+.|.|+||.-+- .-|.+.|..-+..+..+. .+| +...+..-|+++ + ..|=
T Consensus 7 ~k-~vlV~GlG~sG~a~a---~~L~~~G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV-~-SPGI~ 80 (501)
T PRK02006 7 RP-MVLVLGLGESGLAMA---RWCARHGCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVA-L-SPGLS 80 (501)
T ss_pred CC-EEEEEEECHHHHHHH---HHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEE-E-CCEEC
T ss_conf 98-399983368899999---999978984999989999861999986089818977889867846899999-8-99008
Q ss_pred --CHHHHHHHHHHHCCCCCEEE
Q ss_conf --07887666663204562799
Q gi|255764505|r 124 --SDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 124 --t~e~~~~~~~~k~~~~~iI~ 143 (341)
.++...+++.|+++|+++++
T Consensus 81 p~~p~~~~~l~~A~~~gi~i~~ 102 (501)
T PRK02006 81 PLEPALAALLAAARERGIPVWG 102 (501)
T ss_pred CCCCCHHHHHHHHHHCCCCEEE
T ss_conf 8885431999999987995876
No 270
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=79.85 E-value=5.1 Score=20.48 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHH--CCCCCCC-----CCCCCH------HHH-----CCCEEECCC
Q ss_conf 6999999998279959999338137999999999875--0886110-----123302------320-----230121047
Q gi|255764505|r 52 QFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLAS--TGTPSFF-----VHAAEA------SHG-----DLGMITRDD 113 (341)
Q Consensus 52 ~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s--~G~~a~~-----~~~~ea------~Hg-----dlg~i~~~D 113 (341)
++..+.+.+...++++-+++-++...=..++..+|.+ +|+.-+. .|+.++ +-+ .+.=|..-|
T Consensus 311 AL~~iA~~L~~~~~~~g~l~s~r~tnEe~Yl~qKlaR~~lgTnniD~~ar~~~~~~~~~l~~~~~~~~~~~s~~Die~AD 390 (809)
T PRK07860 311 ALAVAARGLAAARGRTGVLVGGRLTVEDAYAYAKFARIALGTNDIDFRARPHSAEEADFLAARVAGRGMGVTYADLESAP 390 (809)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHCC
T ss_conf 99999999975236635996687747888888999997348876256666566137889987405788898989997499
Q ss_pred EEEEE-ECCCCCHHHH--HHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECC
Q ss_conf 07898-3687807887--666663204562799844788954521453376886155
Q gi|255764505|r 114 LIIVL-SWSGSSDELK--AILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPE 167 (341)
Q Consensus 114 v~i~i-S~SG~t~e~~--~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~E 167 (341)
+++.+ ||-.++.-++ ++.+.++++|+++|.|.-...-.+++.+|..+.+.-..|
T Consensus 391 ~IlviGsN~~e~hPvl~~rirkA~r~~gaklivIdPr~t~~~~~~a~~~l~~~PGtd 447 (809)
T PRK07860 391 AVLLVGFEPEEESPIVFLRLRKAARKHGLPVYAIAPFATRGLTKMSGRLIPTAPGGE 447 (809)
T ss_pred EEEEEECCCHHHCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCH
T ss_conf 899994781255769999999999858997999888897468887623232689955
No 271
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=78.80 E-value=5.5 Score=20.26 Aligned_cols=101 Identities=21% Similarity=0.316 Sum_probs=59.7
Q ss_pred CEEEEECCCHHH--HHH-----------------H-HHHHHHHCCCCCCCC-CCCCHHHHCCCEEEC-----CCEEEEEE
Q ss_conf 599993381379--999-----------------9-999987508861101-233023202301210-----47078983
Q gi|255764505|r 66 RVVITGIGKSGH--IGS-----------------K-LASTLASTGTPSFFV-HAAEASHGDLGMITR-----DDLIIVLS 119 (341)
Q Consensus 66 rv~~~GvG~S~~--ia~-----------------k-~a~tl~s~G~~a~~~-~~~ea~Hgdlg~i~~-----~Dv~i~iS 119 (341)
++.|.|+|+.|. +|+ . -...|.+.|++-+.= |..+. |.. -|||+.=
T Consensus 1 ~iHFvGIGG~GMSglA~~L~~~G~~VsGSD~~~~~y~t~~L~~~Gi~I~~g~h~~~n-------~~~~p~g~~~vVv~S- 72 (491)
T TIGR01082 1 KIHFVGIGGIGMSGLAEILLNRGYKVSGSDIAENAYTTKRLEALGIKIYIGEHSAEN-------LDDLPTGAADVVVVS- 72 (491)
T ss_pred CEEEEECCHHCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEECCCCCCHHH-------HCCCCCCCCCEEEEE-
T ss_conf 957896062034489999985789087720335631589998678766279967798-------203678974379986-
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCE-EEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 6878078876666632045627998447889545214533-76886155432475217899999999
Q gi|255764505|r 120 WSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIV-LTLPKEPESCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 120 ~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~-l~~~~~~Ea~~~~~aPt~Stt~~l~~ 185 (341)
. ---+|-..=++.|+++++||+ ...-.|+++.-.. =-+.|. ..+|- |+||++++.
T Consensus 73 ~-~Ai~~~NpEi~~A~~~~IPv~----~R~~~Lael~~~~k~~iaVa---GtHGK---TTTTamia~ 128 (491)
T TIGR01082 73 A-AAIKEDNPEIVEAKERGIPVI----RRAEMLAELMRKRKESIAVA---GTHGK---TTTTAMIAV 128 (491)
T ss_pred E-ECCCCCCHHHHHHHHCCCCEE----CHHHHHHHHHHHHCCEEEEE---CCCCC---HHHHHHHHH
T ss_conf 4-033788888999996488813----37899999986208707998---36872---568999999
No 272
>PRK13529 malate dehydrogenase; Provisional
Probab=78.47 E-value=5.6 Score=20.19 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=48.7
Q ss_pred CEEEEECCCHHH-HHHHHHHHHHHCCCCC------CC-CC---------------------CCCHH-H-------HCC-C
Q ss_conf 599993381379-9999999987508861------10-12---------------------33023-2-------023-0
Q gi|255764505|r 66 RVVITGIGKSGH-IGSKLASTLASTGTPS------FF-VH---------------------AAEAS-H-------GDL-G 107 (341)
Q Consensus 66 rv~~~GvG~S~~-ia~k~a~tl~s~G~~a------~~-~~---------------------~~ea~-H-------gdl-g 107 (341)
|++|+|.|..|. ||+-+...+.+-|.+. ++ ++ ..+.. + ++| .
T Consensus 297 riv~~GAGsAg~GIA~~l~~~~~~~Gls~eeA~~~i~~~D~~GLl~~~R~dL~~~k~~fa~~~~~~~~~~~~~~~~~L~e 376 (563)
T PRK13529 297 RVVFLGAGSAGCGIAEQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPFAQKREELSGWKTENDGISLLE 376 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCEECCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCHHH
T ss_conf 79996577487899999999998769998987143999948981357998760999986688545415455677899999
Q ss_pred EE--ECCCEEEEEECCC--CCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 12--1047078983687--8078876666632045627998447889
Q gi|255764505|r 108 MI--TRDDLIIVLSWSG--SSDELKAILYYARRFSIPLIAITSENKS 150 (341)
Q Consensus 108 ~i--~~~Dv~i~iS~SG--~t~e~~~~~~~~k~~~~~iI~iT~~~~S 150 (341)
.+ -+-|++|..|.-| =|+|+++.+... ..-|||==-+||.|
T Consensus 377 vV~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~--~erPIIF~LSNPT~ 421 (563)
T PRK13529 377 VVRNVKPTVLIGVSGQPGAFTEEIIKEMAAH--CERPIIFPLSNPTS 421 (563)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHC--CCCCEEEECCCCCC
T ss_conf 9974589889983789998799999999845--99988986789843
No 273
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=77.33 E-value=5.8 Score=20.09 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=44.3
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECC--CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9338137999999999875088611012330232023012104--70789836878078876666632045627998447
Q gi|255764505|r 70 TGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRD--DLIIVLSWSGSSDELKAILYYARRFSIPLIAITSE 147 (341)
Q Consensus 70 ~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~--Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~ 147 (341)
.|+|+|-.+..++-.-|...|+++ +--|.|++..... |+++. ++++. +.+...+.++|++.+-
T Consensus 8 ~GlGSS~mlkm~i~~vl~~lgi~~------~v~h~di~~a~~~~~Diiit------~~~la---~~~~~~~~~vi~l~n~ 72 (86)
T cd05563 8 SGLGSSLMLKMNVEKVLKELGIEA------EVEHTDLGSAKASSADIIVT------SKDLA---SLLADGGAKVIGLKNI 72 (86)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCC------EEEEEEHHHCCCCCCCEEEE------CHHHH---HHHHCCCCEEEEEECC
T ss_conf 994389999999999999869982------79980264468788999998------78998---6631179829998357
Q ss_pred CC
Q ss_conf 88
Q gi|255764505|r 148 NK 149 (341)
Q Consensus 148 ~~ 149 (341)
-+
T Consensus 73 ~d 74 (86)
T cd05563 73 MD 74 (86)
T ss_pred CC
T ss_conf 89
No 274
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.22 E-value=4.6 Score=20.81 Aligned_cols=76 Identities=26% Similarity=0.275 Sum_probs=38.4
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCC------HHH------------HCCCEEECCCEEEEEECCCC
Q ss_conf 279959999338137999999999875088611012330------232------------02301210470789836878
Q gi|255764505|r 62 AIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAE------ASH------------GDLGMITRDDLIIVLSWSGS 123 (341)
Q Consensus 62 ~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~e------a~H------------gdlg~i~~~Dv~i~iS~SG~ 123 (341)
...|++++.|.|+||.- .+..|.+.|...+..+..+ ... .+...+..-|.+|. ..|=
T Consensus 5 ~~~~~~LV~G~G~sG~s---~a~~L~~~G~~V~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vv~--SPgI 79 (448)
T PRK03803 5 ASDGLRIVVGLGKSGMS---LVRFLARQGYQFAVTDTRENPPELATLRRDYPQVEVRCGELDAEFLCQAEEIIV--SPGL 79 (448)
T ss_pred ECCCCEEEEEECHHHHH---HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEE--CCCC
T ss_conf 05995899998999999---999999788959999189991679999974799779978889778078999998--9972
Q ss_pred CHHHHHHHHHHHCCCCCEEE
Q ss_conf 07887666663204562799
Q gi|255764505|r 124 SDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 124 t~e~~~~~~~~k~~~~~iI~ 143 (341)
. .-...++.++++|+++++
T Consensus 80 ~-~~~p~~~~a~~~~i~i~~ 98 (448)
T PRK03803 80 A-LATPALQAAAAAGIKISG 98 (448)
T ss_pred C-CCCHHHHHHHHCCCCEEC
T ss_conf 9-999999999985996831
No 275
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate. Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=77.01 E-value=5.1 Score=20.50 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH----HHHHHHC
Q ss_conf 780788766666320456279984478895452145337688615543247521789999999999999----9999850
Q gi|255764505|r 122 GSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALA----IALLESR 197 (341)
Q Consensus 122 G~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dala----v~l~~~~ 197 (341)
+.=.++++-+..+++.|-.+|-+||-. +-.+ -+ ++|+- .+...|+.=+|+| +.||+.-
T Consensus 24 ~~i~~lv~~v~~L~~~Gh~vviVSSGA-----------~AaG--~~--~LG~~---~rP~~la~KQAlAAVGQ~~Lm~~y 85 (379)
T TIGR01027 24 SRIAELVEQVAALHAAGHEVVIVSSGA-----------VAAG--FE--ALGLP---ERPKTLAEKQALAAVGQVRLMQLY 85 (379)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCH-----------HHHH--HH--HCCCC---CCCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 999999999999986599899981675-----------8862--34--45569---998625678878731456899999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEE--E-EEECCCHHH
Q ss_conf 3387888753110011112433333210475430551002388889874104662000000432323--2-412340356
Q gi|255764505|r 198 NFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLK--G-IITEGDIFR 274 (341)
Q Consensus 198 ~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~li--G-IITdgDlrR 274 (341)
.+.|..| |=.+|+-|+|-.|+-...++ -+.|. +..|..+.+.+ .+||+|||+.+- . -|=|.|-.=
T Consensus 86 ---~~~F~~Y--g~~~aQiLLTr~D~~~R~ee-Ry~NA----r~TL~~Ll~~g--vvPIiNENDTVaveEi~fGDND~LS 153 (379)
T TIGR01027 86 ---ENLFSSY--GLKVAQILLTRADFSKREEE-RYLNA----RNTLEALLELG--VVPIINENDTVAVEEIKFGDNDTLS 153 (379)
T ss_pred ---HHHHHHC--CCCHHHHHHCHHHHHHHHHH-HHHHH----HHHHHHHHHCC--CEEEEECCCCEEEEEEEECCCCHHH
T ss_conf ---9999754--88222434057988633789-99999----99999998659--4789867742244000546781699
Q ss_pred HH-----HCCCC--CCCHHHHCCCCCEEECCCCC
Q ss_conf 76-----17823--37098834889789779987
Q gi|255764505|r 275 NF-----HKDLN--TLSVEDVMIKNPKVILEDTL 301 (341)
Q Consensus 275 ~l-----~~~~~--~~~v~~iMt~~p~~I~~d~~ 301 (341)
++ ..|+. =+-+.=+.+.||. -+||+.
T Consensus 154 AlvA~Lv~AD~L~LLTD~dGLYd~dPR-~nPdA~ 186 (379)
T TIGR01027 154 ALVAILVGADLLVLLTDVDGLYDADPR-TNPDAK 186 (379)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCE
T ss_conf 999999975289776175533068745-378514
No 276
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.86 E-value=6.2 Score=19.88 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=19.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79959999338137999999999875088611
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTPSF 94 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~ 94 (341)
.+|||.+.|.|+||.-+- ..|.+.|....
T Consensus 16 l~~kvlV~GlG~SG~s~a---~~L~~~G~~v~ 44 (476)
T PRK00141 16 LRGRVLVAGAGVSGLGIA---KMLSELGCDVV 44 (476)
T ss_pred HCCCEEEEEECHHHHHHH---HHHHHCCCEEE
T ss_conf 699889992278899999---99997899799
No 277
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=76.77 E-value=6.2 Score=19.86 Aligned_cols=99 Identities=25% Similarity=0.348 Sum_probs=48.6
Q ss_pred CCEEEEECCCHHHHH--H-----------------HHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEE-EECCCCC
Q ss_conf 959999338137999--9-----------------9999987508861101233023202301210470789-8368780
Q gi|255764505|r 65 GRVVITGIGKSGHIG--S-----------------KLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIV-LSWSGSS 124 (341)
Q Consensus 65 grv~~~GvG~S~~ia--~-----------------k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~-iS~SG~t 124 (341)
.|+.|.|+|++|.=+ + .....|.+.|.+-+.=|..+ .+.+.|+||. =..+-..
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~-------ni~~~~~VV~s~Ai~~~N 80 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAE-------NILDADVVVVSNAIKEDN 80 (459)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHCCCEEECCCCHH-------HCCCCCEEEEECCCCCCC
T ss_conf 6179996550567999999996799117716652677899997899686797978-------858996599965657999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 788766666320456279984478895452145337688615543247521789999999
Q gi|255764505|r 125 DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLA 184 (341)
Q Consensus 125 ~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~ 184 (341)
+| +.+|+++|+|++. ..-.|+++-...--+.|. ..+|- |+||.+++
T Consensus 81 pE----i~~A~e~~ipi~~----r~e~L~elm~~~~~iaVa---GTHGK---TTTTsmla 126 (459)
T COG0773 81 PE----IVAALERGIPVIS----RAEMLAELMRFRTSIAVA---GTHGK---TTTTSMLA 126 (459)
T ss_pred HH----HHHHHHCCCCEEC----HHHHHHHHHHCCEEEEEE---CCCCC---HHHHHHHH
T ss_conf 89----9999985998162----899999997077169994---78875---40899999
No 278
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=76.66 E-value=3 Score=22.20 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=29.1
Q ss_pred EECCCEEEEEECCC--CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEE
Q ss_conf 21047078983687--8078876666632045627998447889545214533768
Q gi|255764505|r 109 ITRDDLIIVLSWSG--SSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTL 162 (341)
Q Consensus 109 i~~~Dv~i~iS~SG--~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~ 162 (341)
+....-...+...+ +...+.++++.+.-.+.-+|.+=+.+++++.|..=+.-.+
T Consensus 65 ~~~~~~~~~~~~~~g~~e~~L~~~l~~~~~~~~D~~LvEGfK~~~~pKi~~~r~~~ 120 (165)
T TIGR00176 65 VASSERYAVMTETQGEEELDLEALLKRLADRELDIILVEGFKDSPLPKIVVIRNEA 120 (165)
T ss_pred EECCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCC
T ss_conf 66790689987528999878799986428552687898524557887489972675
No 279
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=75.97 E-value=6.4 Score=19.78 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=61.7
Q ss_pred HCCHHHHHHHHH---HHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC-----------------------CCCCCC
Q ss_conf 011366999999---998279959999338137999999999875088611-----------------------012330
Q gi|255764505|r 47 GELSFQFHCAVE---KIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSF-----------------------FVHAAE 100 (341)
Q Consensus 47 ~~~~~~~~~av~---~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~-----------------------~~~~~e 100 (341)
..+++.|.+++- .+..-+|+++|..=-|. +|.|...+....+|+|.- |+..-+
T Consensus 38 TGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKP-LV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQ 116 (542)
T COG1111 38 TGLGKTFIAAMVIANRLRWFGGKVLFLAPTKP-LVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQ 116 (542)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCH-HHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHHHHHHHCCEEEECCH
T ss_conf 87507999999999998745884899658951-79999999999858984332311177786889998751778995638
Q ss_pred HHHHCC--CEEECCCEEEEE-----ECCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCHHHHCCCCEE
Q ss_conf 232023--012104707898-----368780788766666320456-279984478895452145337
Q gi|255764505|r 101 ASHGDL--GMITRDDLIIVL-----SWSGSSDELKAILYYARRFSI-PLIAITSENKSVVACHADIVL 160 (341)
Q Consensus 101 a~Hgdl--g~i~~~Dv~i~i-----S~SG~t~e~~~~~~~~k~~~~-~iI~iT~~~~S~la~~ad~~l 160 (341)
-.-.|| |.+...|+...| -..|+-..+-=+=.+++.... .++|+|..|.|.+.+.-.++=
T Consensus 117 vveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~ 184 (542)
T COG1111 117 VVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVE 184 (542)
T ss_pred HHHHHHHCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 77768761766767805898623554137606999999999825684379872389998799999998
No 280
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=75.08 E-value=2.4 Score=22.86 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 366999999998279959999338137
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~ 76 (341)
..++++..++|.+++-=|+|+|.|=|.
T Consensus 6 ~~~l~~l~~~l~~s~~ivvlTGAGiSt 32 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGIST 32 (285)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCEEEH
T ss_conf 899999999997299789992973005
No 281
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=74.96 E-value=4.7 Score=20.74 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCCC
Q ss_conf 899999999679958999806984899985888974368
Q gi|255764505|r 302 LTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340 (341)
Q Consensus 302 i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkagi 340 (341)
+..+.....+..=+-|+|+. ++++.|+|.+.|++|-|+
T Consensus 415 l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi 452 (681)
T COG2216 415 LDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGI 452 (681)
T ss_pred HHHHHHHHHHCCCCCEEEEE-CCEEEEEEEEHHHCCHHH
T ss_conf 99999999855897449988-999999998643135348
No 282
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.70 E-value=6.7 Score=19.60 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=16.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 799599993381379999999998750886
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTP 92 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~ 92 (341)
-| ||.+.|.|+||.-+-+ .|...|..
T Consensus 14 gk-~v~V~GlG~sG~s~a~---~L~~~G~~ 39 (481)
T PRK01438 14 GL-RVVVAGLGVSGFPAAD---ALHELGAS 39 (481)
T ss_pred CC-EEEEEEECHHHHHHHH---HHHHCCCE
T ss_conf 99-8999957588999999---99967998
No 283
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit; InterPro: IPR010046 This entry represents a well-defined clade of molybdopterin-dependent formate dehydrogenases, bacterial type , , , . It represents the alpha subunit, which contains a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulphur clusters and cytochromes.; GO: 0008863 formate dehydrogenase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=74.69 E-value=7 Score=19.49 Aligned_cols=195 Identities=16% Similarity=0.246 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHCC--CCEEEEECCC-HHHHHHHHHHHHHH-CCCCCC-----CCC-CCC-HHHHCCC---------EEE
Q ss_conf 66999999998279--9599993381-37999999999875-088611-----012-330-2320230---------121
Q gi|255764505|r 51 FQFHCAVEKIKAIK--GRVVITGIGK-SGHIGSKLASTLAS-TGTPSF-----FVH-AAE-ASHGDLG---------MIT 110 (341)
Q Consensus 51 ~~~~~av~~i~~~~--grv~~~GvG~-S~~ia~k~a~tl~s-~G~~a~-----~~~-~~e-a~Hgdlg---------~i~ 110 (341)
++|..+.+.|..-. -||.||--|. +..=|-++.+.|++ +|+-=+ ..| |+. |+--.+| =+.
T Consensus 136 ~A~~~I~~~l~~~d~P~qv~fYtSGRG~SNEaay~~qLfaR~~GsNNlpDcS~mCH~pS~vaL~~SiG~G~g~v~l~D~~ 215 (824)
T TIGR01701 136 DAYDEIAAKLNSLDDPKQVAFYTSGRGTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKKSIGIGKGSVLLEDFE 215 (824)
T ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHCCCCEEEEEEEECC
T ss_conf 99999999851778700510111446326899999999998727787133354316861123422023230367730000
Q ss_pred CCCEEEEE-ECCCC-CHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC-----------------C----------CCEEE
Q ss_conf 04707898-36878-07887666663204562799844788954521-----------------4----------53376
Q gi|255764505|r 111 RDDLIIVL-SWSGS-SDELKAILYYARRFSIPLIAITSENKSVVACH-----------------A----------DIVLT 161 (341)
Q Consensus 111 ~~Dv~i~i-S~SG~-t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~-----------------a----------d~~l~ 161 (341)
.-||+|.| |+-|. .+-++.-+..||++|+|||.|-=...--|-++ | |+.|.
T Consensus 216 ~~D~~v~iG~n~gtN~PR~l~~L~~a~~rG~KiI~iNPl~E~GL~rF~~P~~P~~~L~g~gt~I~s~y~Qv~~GGD~Al~ 295 (824)
T TIGR01701 216 HTDLLVLIGSNAGTNHPRMLKELIKAKKRGAKIIAINPLRERGLERFASPQIPIKMLTGKGTQISSEYYQVRIGGDIALL 295 (824)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCHHHHCCCCCCEEHEEECCCCCHHHHHH
T ss_conf 58379995454898884368899999963983999758855011301678876021127873000101047774279999
Q ss_pred EEEEC---CCCCC----C---C-----CHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--HH--HHHH
Q ss_conf 88615---54324----7---5-----21789-9999999999999999850338788875311001111--24--3333
Q gi|255764505|r 162 LPKEP---ESCPH----G---L-----APTTS-AIMQLAIGDALAIALLESRNFSENDFYVLHPGGKLGT--LF--VCAS 221 (341)
Q Consensus 162 ~~~~~---Ea~~~----~---~-----aPt~S-tt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~--~L--l~V~ 221 (341)
.++.| |++-. | + -|--. -.++.++.-. ++-.+.|..=..+|..+|-.|-=+- .- ..=.
T Consensus 296 ~G~~k~LiE~~~~~~A~G~~~vaGqdGkPkdqdnaa~vafaas--~asadnks~~D~~Fi~~HT~GF~e~~~~~~~~~W~ 373 (824)
T TIGR01701 296 VGLMKLLIEAEDAVKAAGQPGVAGQDGKPKDQDNAAMVAFAAS--MASADNKSLIDHEFIANHTQGFDELRRAVLQLEWN 373 (824)
T ss_pred HHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCH
T ss_conf 9988876321001123678875677888752136899999987--75303543000789988602778999999724702
Q ss_pred HHHCCCCCCEEEEEHHHHHHHHHHHHCCCCC
Q ss_conf 3210475430551002388889874104662
Q gi|255764505|r 222 DVMHSGDSIPLVKIGCPLIDAITILSEKRFG 252 (341)
Q Consensus 222 DiM~~~~~ip~V~~~~si~eal~~m~~~~~g 252 (341)
|||... = + +.+-|.++...+.+....
T Consensus 374 di~~~~-G---l-S~~~i~~~A~~~a~s~r~ 399 (824)
T TIGR01701 374 DIERVS-G---L-SQEEILEVAKLLANSERV 399 (824)
T ss_pred HHHHHH-C---C-CHHHHHHHHHHHHHCCCE
T ss_conf 456541-1---1-579999999998612472
No 284
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=73.61 E-value=6.8 Score=19.55 Aligned_cols=257 Identities=18% Similarity=0.182 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHH-HH-------HHHH--------HHHHCCCCCCC-CCCCCHHHHCCCE----
Q ss_conf 36699999999827995999933813799-99-------9999--------98750886110-1233023202301----
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHI-GS-------KLAS--------TLASTGTPSFF-VHAAEASHGDLGM---- 108 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~i-a~-------k~a~--------tl~s~G~~a~~-~~~~ea~Hgdlg~---- 108 (341)
...+.||+++|..||-=|++.|-| .| .- .+|- ||. |.=||- =||.- =|=|||
T Consensus 200 ~qsI~kA~~li~~AkkPVilvGGG---vin~a~as~~L~elae~~~~PV~tTLm--GlG~FP~~Hp~~--LGMlGMHGt~ 272 (593)
T TIGR00118 200 MQSIKKAAELIEKAKKPVILVGGG---VINIAGASEELKELAERLQIPVTTTLM--GLGSFPEDHPLS--LGMLGMHGTK 272 (593)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCH---HHHCCCCHHHHHHHHHHCCCCCEECCC--CCCCCCCCCHHH--HCCCCCHHHH
T ss_conf 999999999999726977986413---542055407999998540776001015--678878468355--0356765788
Q ss_pred -----EECCCEEEEEE--CCCC-CHHHHHHHHHHH----CCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHH
Q ss_conf -----21047078983--6878-078876666632----04562799844788954521453376886155432475217
Q gi|255764505|r 109 -----ITRDDLIIVLS--WSGS-SDELKAILYYAR----RFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPT 176 (341)
Q Consensus 109 -----i~~~Dv~i~iS--~SG~-t~e~~~~~~~~k----~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt 176 (341)
+.+-|++|+|= +|=+ |-.+-..++.|| +-.--||-|==.| ..+.|.-.. ++|+.=+|
T Consensus 273 ~AN~Av~EcDllIAvG~RFdDRvTGnl~~FAp~AkraaaeGrGGiiHiDIDP-aeIgK~v~~--diPiVGDA-------- 341 (593)
T TIGR00118 273 TANLAVHECDLLIAVGARFDDRVTGNLAKFAPNAKRAAAEGRGGIIHIDIDP-AEIGKNVRV--DIPIVGDA-------- 341 (593)
T ss_pred HHHHHHHHCCEEEEEEEEECCCCCCCHHHHCHHHHHHHHCCCCCEEEEEECC-CCCCCCCCC--CCCCCCCH--------
T ss_conf 8732542053214530000566348776723165675414787369998537-655771146--40103675--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 89999999999999999985033-8788875311001111-243333321047543055100238888987410466200
Q gi|255764505|r 177 TSAIMQLAIGDALAIALLESRNF-SENDFYVLHPGGKLGT-LFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCV 254 (341)
Q Consensus 177 ~Stt~~l~~~Dalav~l~~~~~~-t~~df~~~HPgG~lg~-~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v 254 (341)
+. +|.+-|. .+.+.+.. ...|-..|-- +|-+ +-...-..|- .++-+.+.|..=|+++.+.+...+.. +
T Consensus 342 --r~---VL~~ll~-~~~~~~~~~~~~~~~~W~~--~i~~Wk~~~~l~Y~~-~~~~~kiKPQ~vi~~~~~~~~~~~~~-a 411 (593)
T TIGR00118 342 --RN---VLEELLK-KLEKEKALKERSEEQAWLE--QINKWKKEYPLAYMD-YTEEGKIKPQQVIEEISRVTKDIGRE-A 411 (593)
T ss_pred --HH---HHHHHHH-HHHHHHCCCCCCHHHHHHH--HHHHHHHHCCHHHCC-CCCCCCCCCHHHHHHHHHHCCCCCCC-E
T ss_conf --89---9999999-9876303567224889999--999987614731246-67888536079999999962788853-6
Q ss_pred EECCCCCE--E--EEEEECCCHHHHHHC-CC----CCCCHH---HHCCC--CCEEECCCCCHHHH---HHHHHHCCCCEE
Q ss_conf 00004323--2--324123403567617-82----337098---83488--97897799878999---999996799589
Q gi|255764505|r 255 AVVDEGQK--L--KGIITEGDIFRNFHK-DL----NTLSVE---DVMIK--NPKVILEDTLLTVA---MQLLRQHNISVL 317 (341)
Q Consensus 255 ~Vvd~~~~--l--iGIITdgDlrR~l~~-~~----~~~~v~---~iMt~--~p~~I~~d~~i~eA---l~lM~~~kI~~L 317 (341)
.|+.+=|. . .=.++-+.=||++.. ++ +..|+. ++..+ ..+.|.-|-+..-- |.-..++.|...
T Consensus 412 ivTTDVGQhQMWaA~fy~~~~Pr~fI~SGGLGTMGFGlPAAiGAkvA~pe~~Vi~i~GDGsF~Mn~QEL~t~~~y~iPV~ 491 (593)
T TIGR00118 412 IVTTDVGQHQMWAAQFYPFKKPRKFITSGGLGTMGFGLPAAIGAKVAKPEETVICITGDGSFQMNLQELSTIVQYDIPVK 491 (593)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 89727773478898615777886413137763110102688600004788664787538732123467889987189649
Q ss_pred EEEECCCEEEEEEE-HHHH
Q ss_conf 99806984899985-8889
Q gi|255764505|r 318 MVVDDCQKAIGIVH-FLDL 335 (341)
Q Consensus 318 pVVD~~~~lvGiIt-~~DL 335 (341)
.|+=| |+.+|+|+ +++|
T Consensus 492 i~iLN-N~~LGMV~QWQ~l 509 (593)
T TIGR00118 492 IVILN-NRYLGMVRQWQEL 509 (593)
T ss_pred EEEEC-CCCCCHHHHHHHH
T ss_conf 99845-8965604888887
No 285
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=73.55 E-value=5.1 Score=20.47 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHHHHHCCCCEEEEECCCHH
Q ss_conf 99998279959999338137
Q gi|255764505|r 57 VEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 57 v~~i~~~~grv~~~GvG~S~ 76 (341)
.++|.+++-=|+++|.|=|.
T Consensus 2 ~~~l~~sk~ivvlTGAGiS~ 21 (225)
T cd01411 2 QHILKNAKRIVFFTGAGVST 21 (225)
T ss_pred HHHHHHCCCEEEEECCHHHH
T ss_conf 78996499899994821100
No 286
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=73.28 E-value=3 Score=22.13 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 99999998279959999338137
Q gi|255764505|r 54 HCAVEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 54 ~~av~~i~~~~grv~~~GvG~S~ 76 (341)
++..++|.+++.=|++||.|=|-
T Consensus 2 ~~la~~l~~s~~ivvlTGAGiSt 24 (239)
T PRK00481 2 ETLKEILDEAKRIVVLTGAGISA 24 (239)
T ss_pred HHHHHHHHHCCCEEEEECCHHHH
T ss_conf 78999998499799997941100
No 287
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=71.62 E-value=5.4 Score=20.31 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHH--CCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHC--
Q ss_conf 999998750886110123302320--230121047078983687807887666663204562799844788-954521--
Q gi|255764505|r 81 KLASTLASTGTPSFFVHAAEASHG--DLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK-SVVACH-- 155 (341)
Q Consensus 81 k~a~tl~s~G~~a~~~~~~ea~Hg--dlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~-S~la~~-- 155 (341)
.+.+.|..+|.|.+ .|++| |.|..+++++++.--.||-.--+. .+.||-+|+++|+|.+.+. +...+.
T Consensus 123 pl~~~LgvLGmpG~-----TAY~gLl~igqpk~GetvvVSaAaGaVGsvv--gQiAKlkG~rVVGiaGg~eK~~~l~~~l 195 (340)
T COG2130 123 PLSAYLGVLGMPGL-----TAYFGLLDIGQPKAGETVVVSAAAGAVGSVV--GQIAKLKGCRVVGIAGGAEKCDFLTEEL 195 (340)
T ss_pred CCCHHHHHCCCCHH-----HHHHHHHHHCCCCCCCEEEEEECCCCCCHHH--HHHHHHHCCEEEEECCCHHHHHHHHHHC
T ss_conf 83268763478318-----8899998726899998899973466530688--9998860775999658889989998703
Q ss_pred -CCCEEEEE
Q ss_conf -45337688
Q gi|255764505|r 156 -ADIVLTLP 163 (341)
Q Consensus 156 -ad~~l~~~ 163 (341)
.|.+|+..
T Consensus 196 GfD~~idyk 204 (340)
T COG2130 196 GFDAGIDYK 204 (340)
T ss_pred CCCEEEECC
T ss_conf 871355447
No 288
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=71.28 E-value=5.5 Score=20.22 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=44.2
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HCC-CCCEEEEECCCCCHHH-----HCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 078983687807887666663-204-5627998447889545-----214533768861554324752178999999999
Q gi|255764505|r 114 LIIVLSWSGSSDELKAILYYA-RRF-SIPLIAITSENKSVVA-----CHADIVLTLPKEPESCPHGLAPTTSAIMQLAIG 186 (341)
Q Consensus 114 v~i~iS~SG~t~e~~~~~~~~-k~~-~~~iI~iT~~~~S~la-----~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~ 186 (341)
+|-.+|-||.|.=+.+.+.-+ ++. +.. .....+.. +.-|-++.+ +..|.+--|.+.-...+=+.
T Consensus 639 ~VtGvSGSGKStLi~~~l~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~vi~v----dQ~pig~t~RSnpaTY~g~~ 709 (944)
T PRK00349 639 CVTGVSGSGKSTLINETLYKALARKLNGA-----KKVPGPYKEIEGLEHIDKVIDI----DQSPIGRTPRSNPATYTGVF 709 (944)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCEEEE----CCCCCCCCCCCCCEEHHCCH
T ss_conf 99614788637999999999999986477-----7677874200450001411353----35655677788700111457
Q ss_pred H----HHH-HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9----999-999985033878887531100
Q gi|255764505|r 187 D----ALA-IALLESRNFSENDFYVLHPGG 211 (341)
Q Consensus 187 D----ala-v~l~~~~~~t~~df~~~HPgG 211 (341)
| ..| ....+.||++...|.-|.|||
T Consensus 710 d~IR~lFA~~~~ak~rg~~~~~FSfN~~gG 739 (944)
T PRK00349 710 DPIRELFAGTPEAKARGYKPGRFSFNVKGG 739 (944)
T ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999841948797099976067799896
No 289
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=71.07 E-value=8.3 Score=18.92 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 999999850338788875----------3110011112433333210475430551002388889874104662000000
Q gi|255764505|r 189 LAIALLESRNFSENDFYV----------LHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD 258 (341)
Q Consensus 189 lav~l~~~~~~t~~df~~----------~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd 258 (341)
.+-.-|++.|.|.|+|+. .+|-=...+.-+++.|+|.. |.|..=..+.|+-. ..-+-.+++|+.
T Consensus 147 ~a~rym~~yG~t~E~lA~Vav~~r~~A~~NP~A~~r~~~lt~edvl~s----~~Ia~PL~l~dc~~--~sDGAaAvVl~s 220 (391)
T PRK08313 147 HVRAYIRRSGAPTHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMAS----QMLWDPIRFDETCP--SSDGACAVVIGD 220 (391)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC----CEEECCCCHHHCCC--CCCCCEEEEEEC
T ss_conf 999999986989999999999999876119730005899988880368----64756875030189--898647999953
Q ss_pred C
Q ss_conf 4
Q gi|255764505|r 259 E 259 (341)
Q Consensus 259 ~ 259 (341)
+
T Consensus 221 ~ 221 (391)
T PRK08313 221 E 221 (391)
T ss_pred H
T ss_conf 9
No 290
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=70.56 E-value=5.4 Score=20.31 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHHCCC
Q ss_conf 7899999999679958999806984899985888974368
Q gi|255764505|r 301 LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLRFGI 340 (341)
Q Consensus 301 ~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlkagi 340 (341)
.+.++.+...+..=+-|.|+- ++++.|+|-+.|++|.||
T Consensus 413 dlD~av~qVa~~GgTPLvVc~-dn~iyGVIyLKDiVK~Gi 451 (675)
T TIGR01497 413 DLDEAVDQVAKQGGTPLVVCV-DNKIYGVIYLKDIVKSGI 451 (675)
T ss_pred HHHHHHHHHHHCCCCCEEEEE-CCEEEEEEEEECCCCCCH
T ss_conf 767889998732898479997-577898898730137860
No 291
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=70.48 E-value=2.6 Score=22.64 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=40.3
Q ss_pred EEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHH
Q ss_conf 99844788954521453376886155432475217899999999999999999850338788--875311001111
Q gi|255764505|r 142 IAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND--FYVLHPGGKLGT 215 (341)
Q Consensus 142 I~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d--f~~~HPgG~lg~ 215 (341)
|++.=...+.-.=.|.-++... .-.|-+=-++|-|++.-||-++|+ -++|+=.+| |-+|||-|-=|.
T Consensus 182 iA~~l~tGe~h~frAKaVvlAT-----GG~GR~Y~sttnA~t~TGDG~gi~--~RaGlPlqDmEF~QFHPTGiaga 250 (615)
T TIGR01816 182 IAYELETGEIHVFRAKAVVLAT-----GGYGRIYKSTTNAHTLTGDGVGIV--LRAGLPLQDMEFWQFHPTGIAGA 250 (615)
T ss_pred EEEEECCCCEEEEEEEEEEEEE-----CCCCHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCHHHHHCC
T ss_conf 9876058888899541078973-----786405676644565521368888--72688711322312370334108
No 292
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=70.29 E-value=8.7 Score=18.79 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99599993381379999999998750886110123302320230121047078983687807887666663204562799
Q gi|255764505|r 64 KGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 64 ~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~ 143 (341)
.++|+++ |+.|-.++-++.-|++.|....-+...+..+.+ -.+..-|+||.---=..|.++++-++++ ..++-+.-
T Consensus 98 ~~~i~II--GG~G~mG~~F~~~f~~sGy~V~ild~~dw~~~~-~~~~~advViVsVPI~~T~~VI~~l~~l-~~~~lL~D 173 (374)
T PRK11199 98 LRPVVIV--GGKGQLGRLFAKMLTLSGYQVRILEKDDWDRAD-DILADAGMVIVSVPIHLTEEVIEKLPPL-PEDCILVD 173 (374)
T ss_pred CCEEEEE--ECCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH-HHHHCCCEEEEEECHHHHHHHHHHCCCC-CCCCEEEE
T ss_conf 8717998--079827799999999679879961644453489-8871799899981458899999857789-99868986
Q ss_pred EECCCCCHHHHC
Q ss_conf 844788954521
Q gi|255764505|r 144 ITSENKSVVACH 155 (341)
Q Consensus 144 iT~~~~S~la~~ 155 (341)
|||-+..|+...
T Consensus 174 iTSvK~~Pl~aM 185 (374)
T PRK11199 174 LTSVKNGPLQAM 185 (374)
T ss_pred CHHCCHHHHHHH
T ss_conf 100427899999
No 293
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=70.09 E-value=8.8 Score=18.76 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEE
Q ss_conf 8780788766666320456279984478895452145337688
Q gi|255764505|r 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP 163 (341)
Q Consensus 121 SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~ 163 (341)
..+++|+.++++.+++.|.++|-+|-++ .++.+||=++.+.
T Consensus 177 ~~~~~~v~~ll~~l~~~G~tii~vtHd~--~~a~~a~Rii~~~ 217 (648)
T PRK10535 177 SHSGEEVMAILHQLRDRGHTVIIVTHDP--QVAAQAERVIEIR 217 (648)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHCCEEEEEE
T ss_conf 9999999999999997799999976486--9996499799995
No 294
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.79 E-value=8.9 Score=18.71 Aligned_cols=75 Identities=23% Similarity=0.262 Sum_probs=36.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCH-HH---------HCCCEE--ECCCEEEEEECCCC---CHHH
Q ss_conf 799599993381379999999998750886110123302-32---------023012--10470789836878---0788
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEA-SH---------GDLGMI--TRDDLIIVLSWSGS---SDEL 127 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea-~H---------gdlg~i--~~~Dv~i~iS~SG~---t~e~ 127 (341)
-| ||.+.|.|+||.-+-+ -|.+.|..-+..+.... .. +|+... ..-|++ .+| .|= .++-
T Consensus 9 gk-~v~v~GlG~sG~s~a~---~L~~~G~~V~~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i-V~S-PGIp~~~p~~ 82 (457)
T PRK01390 9 GK-TVALFGLGGSGLATAR---ALKAGGAEVIAWDDNPDSVAKAAAAGIATADLRTADWSQFAAL-VLS-PGVPLTHPKP 82 (457)
T ss_pred CC-EEEEEEECHHHHHHHH---HHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEE-EEC-CCCCCCCCCC
T ss_conf 99-8999943699999999---9997899799993992066899875983145541232038789-999-9888656673
Q ss_pred HHHHHHHHCCCCCEEE
Q ss_conf 7666663204562799
Q gi|255764505|r 128 KAILYYARRFSIPLIA 143 (341)
Q Consensus 128 ~~~~~~~k~~~~~iI~ 143 (341)
-..+..|+++|+++++
T Consensus 83 ~~~v~~a~~~gi~v~s 98 (457)
T PRK01390 83 HWTVDLARAAGVEVIG 98 (457)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 1999999985991860
No 295
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=69.51 E-value=3.8 Score=21.41 Aligned_cols=83 Identities=28% Similarity=0.282 Sum_probs=58.0
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89836878078876666632045627998447889545214533768861554324752178999999999999999998
Q gi|255764505|r 116 IVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLE 195 (341)
Q Consensus 116 i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~ 195 (341)
|+|-|=||-. ++++..|++.|+++|++-|..| +.+-+++ ...||=..|=+ .|.-..|-+-..||+|..
T Consensus 5 ~lIANRGEIA--~RIiRAC~ElGi~TVAVyS~aD----~dalHV~---LADEavCIGea--~S~kSYL~IpnI~aAA~~- 72 (451)
T TIGR00514 5 ILIANRGEIA--LRIIRACKELGIATVAVYSTAD----RDALHVL---LADEAVCIGEA--PSAKSYLNIPNIIAAAEI- 72 (451)
T ss_pred EEEECCHHHH--HHHHHHHHHCCCCEEEECCHHH----HHHHHHH---HHCCCCCCCCC--HHHCCCCHHHHHHHHHHH-
T ss_conf 8995260678--8999988864986398600441----3323434---30253006862--211244115889998877-
Q ss_pred HCCCCHHHHHHHHHH-HHHHHH
Q ss_conf 503387888753110-011112
Q gi|255764505|r 196 SRNFSENDFYVLHPG-GKLGTL 216 (341)
Q Consensus 196 ~~~~t~~df~~~HPg-G~lg~~ 216 (341)
+|- ...||| |-|-..
T Consensus 73 -tG~-----~AiHPGYGFLSEN 88 (451)
T TIGR00514 73 -TGA-----DAIHPGYGFLSEN 88 (451)
T ss_pred -CCC-----CEECCCCCHHHHH
T ss_conf -488-----0762887734431
No 296
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=69.19 E-value=4.6 Score=20.77 Aligned_cols=32 Identities=22% Similarity=0.075 Sum_probs=26.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 78983687807887666663204562799844
Q gi|255764505|r 115 IIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 115 ~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
+++.|+||.|.=+..+++.++++|.++-.|-.
T Consensus 7 ivG~s~SGKTTLi~kli~~l~~~G~rV~~IKH 38 (170)
T PRK10751 7 IAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38 (170)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99469999999999999999987984999945
No 297
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=68.82 E-value=9.3 Score=18.57 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=15.9
Q ss_pred CCCCHHHHCCCCCEEECCCC--CHHHHHHHHHHCC
Q ss_conf 33709883488978977998--7899999999679
Q gi|255764505|r 281 NTLSVEDVMIKNPKVILEDT--LLTVAMQLLRQHN 313 (341)
Q Consensus 281 ~~~~v~~iMt~~p~~I~~d~--~i~eAl~lM~~~k 313 (341)
++.++++++.+...+|+.+. .-..|.+++.+++
T Consensus 198 dd~~~~~~~~p~LTTI~~d~~~mG~~Aa~lll~~~ 232 (247)
T cd06276 198 NDTPLKEILRNGITTISTDFENMGKKAAEMVLNEK 232 (247)
T ss_pred CCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 77428974589861896399999999999997589
No 298
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=68.58 E-value=4.8 Score=20.64 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=26.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 78983687807887666663204562799844
Q gi|255764505|r 115 IIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 115 ~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
+++.|+||.|.=+.++++.++++|.++-.|-.
T Consensus 6 ivG~snSGKTTLi~kli~~l~~~G~~V~~iKH 37 (159)
T cd03116 6 FVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99679999999999999999977985989973
No 299
>TIGR01026 fliI_yscN ATPase FliI/YscN family; InterPro: IPR005714 Proteins in this entry show extensive homology to the ATP synthase F1 beta subunit, and are involved in type III protein secretion. They fall into the two separate functional groups outlined below. The first group, exemplified by the Salmonella typhimurium FliI protein (P26465 from SWISSPROT), is needed for flagellar assembly. Most structural components of the bacterial flagellum are translocated through the central channel of the growing flagellar structure by the type III flagellar protein-export apparatus in an ATPase-driven manner, to be assembled at the growing end. FliI is the ATPase that couples ATP hydrolysis to the translocation reaction , . The second group couples ATP hydrolysis to protein translocation in non-flagellar type III secretion systems. Often these systems are involved in virulence and pathogenicity. YscN (P40290 from SWISSPROT) from pathogenic Yersinia species, for example, energises the injection of antihost factors directly into eukaryotic cells, thus overcoming host defences .; GO: 0016887 ATPase activity, 0009058 biosynthetic process, 0015031 protein transport, 0005737 cytoplasm.
Probab=68.12 E-value=6.8 Score=19.57 Aligned_cols=79 Identities=24% Similarity=0.401 Sum_probs=40.6
Q ss_pred HHHHHHHC-CC-CE-EEE--ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEC----CCEEEEEECCCC-CH
Q ss_conf 99999827-99-59-999--33813799999999987508861101233023202301210----470789836878-07
Q gi|255764505|r 56 AVEKIKAI-KG-RV-VIT--GIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITR----DDLIIVLSWSGS-SD 125 (341)
Q Consensus 56 av~~i~~~-~g-rv-~~~--GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~----~Dv~i~iS~SG~-t~ 125 (341)
.++-++-+ || |+ +|. |||||-+ ||||++ -||. .|--=|| =+
T Consensus 163 ~iD~LLTvGkGQR~GIFAGSGVGKStL----------------------------lGMIARn~~~ADv~-ViALIGERGR 213 (455)
T TIGR01026 163 SIDGLLTVGKGQRIGIFAGSGVGKSTL----------------------------LGMIARNNTEADVN-VIALIGERGR 213 (455)
T ss_pred EECCCCCCCCCCCEEEEECCCCCHHHH----------------------------HHHHHHCCCCCCEE-EEEEECCCCC
T ss_conf 310103555665013550376003445----------------------------66763006789827-9986437777
Q ss_pred HHHHHHHHH-HCCC---CCEEEEECCCCCHHHHCCCCEEEEEE
Q ss_conf 887666663-2045---62799844788954521453376886
Q gi|255764505|r 126 ELKAILYYA-RRFS---IPLIAITSENKSVVACHADIVLTLPK 164 (341)
Q Consensus 126 e~~~~~~~~-k~~~---~~iI~iT~~~~S~la~~ad~~l~~~~ 164 (341)
|+-+.++.- .+-| .-+|.=| .-+|||.+.-=...-+.+
T Consensus 214 EV~EFIE~~LG~EGLkrSV~VVaT-SD~SPl~R~~GAy~At~i 255 (455)
T TIGR01026 214 EVKEFIEKDLGEEGLKRSVVVVAT-SDQSPLLRLKGAYVATAI 255 (455)
T ss_pred CHHHHHHHHCCCCCCCEEEEEEEC-CCCCHHHHHHHHHEEHHH
T ss_conf 415788631365666011799836-886388887326400254
No 300
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=67.68 E-value=9.8 Score=18.41 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.6
Q ss_pred CCCEE-EEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 04707-898368780788766666320456279984
Q gi|255764505|r 111 RDDLI-IVLSWSGSSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 111 ~~Dv~-i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
.+||+ |.|...-.++-+..++++||++|+.+|+--
T Consensus 106 ~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~ 141 (217)
T COG4015 106 KGDVVVICIAGGDTIPVTAAIINYAKERGIKTISTN 141 (217)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 388899995489854107999999997096476238
No 301
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=67.60 E-value=6.3 Score=19.82 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=40.5
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 983687807887666663204562799844788954521453376886155432475217899999
Q gi|255764505|r 117 VLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQ 182 (341)
Q Consensus 117 ~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~ 182 (341)
.==+||.|.|+++.+...+..|.++..++..-++.-.. ..+.=.++...||-++. +..+....
T Consensus 11 gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~-~~V~Sr~G~~~~A~~i~--~~~~i~~~ 73 (201)
T COG1435 11 GPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGV-GKVSSRIGLSSEAVVIP--SDTDIFDE 73 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CEEEECCCCCCCCEECC--CHHHHHHH
T ss_conf 15768635999999999997598089985253353564-33653158766535638--75789999
No 302
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=64.43 E-value=11 Score=17.98 Aligned_cols=235 Identities=19% Similarity=0.270 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHHHH----------------HHCCCCCCC----CCCCCHHHHCCCEEECCC--EEEEE-ECCCCCHHHH
Q ss_conf 381379999999998----------------750886110----123302320230121047--07898-3687807887
Q gi|255764505|r 72 IGKSGHIGSKLASTL----------------ASTGTPSFF----VHAAEASHGDLGMITRDD--LIIVL-SWSGSSDELK 128 (341)
Q Consensus 72 vG~S~~ia~k~a~tl----------------~s~G~~a~~----~~~~ea~Hgdlg~i~~~D--v~i~i-S~SG~t~e~~ 128 (341)
||.+|-|+|.+--+| .|.|..--| ++-.++.|- -...+ +=||+ |-.|.+.+
T Consensus 5 VGATG~VGq~~lk~LeeR~FP~~~~~~~AS~RS~G~~~~F~gke~~v~~~~~~----n~F~gekidIAlFSAGgsvSk-- 78 (350)
T TIGR01296 5 VGATGAVGQEMLKILEERNFPIDKLVLLASERSAGRKVTFKGKELEVEEAKKE----NSFEGEKIDIALFSAGGSVSK-- 78 (350)
T ss_pred EECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCEEEEECCCCC----CCCCCCEEEEEEECCCHHHHH--
T ss_conf 96267479999876413678775564410567888578512753660101001----488877033456515313348--
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEE-----CCCCCCCC-C-HHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 6666632045627998447889545214533768861-----55432475-2-178999999999999999998503387
Q gi|255764505|r 129 AILYYARRFSIPLIAITSENKSVVACHADIVLTLPKE-----PESCPHGL-A-PTTSAIMQLAIGDALAIALLESRNFSE 201 (341)
Q Consensus 129 ~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~-----~Ea~~~~~-a-Pt~Stt~~l~~~Dalav~l~~~~~~t~ 201 (341)
+++|.+-+.|+-+| ...|....--|+.|.+|-. +|.-+.|+ | |-.||..+.+++.-|--. .+.+..=.
T Consensus 79 e~aP~a~k~g~~VI----DntS~fR~D~dVPLVVPEVN~~~~~~~~~kgIIANPNCstIqmv~~LkPl~~~-~~ikrVvV 153 (350)
T TIGR01296 79 EFAPKAAKAGVIVI----DNTSAFRMDPDVPLVVPEVNLEDLKEFNKKGIIANPNCSTIQMVVVLKPLHDE-AKIKRVVV 153 (350)
T ss_pred HHHHHHHCCCCEEE----ECCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHH-CCEEEEEE
T ss_conf 88788860875798----17620005789863443778477634788881458860077798840465630-67458999
Q ss_pred HHHHHHHHHHHHH-HHH-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEE-EEECCCH------
Q ss_conf 8887531100111-124-333332104754305510023888898741046620000004323232-4123403------
Q gi|255764505|r 202 NDFYVLHPGGKLG-TLF-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKG-IITEGDI------ 272 (341)
Q Consensus 202 ~df~~~HPgG~lg-~~L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liG-IITdgDl------ 272 (341)
.-|---==+|.=| +-| -+.+-+....+.-|.+.+.. +-.+-.--.+=.+..+|-+|.=.+ -| =-|+=|.
T Consensus 154 STYQAVSGAG~~g~~eL~nQtka~~~~~E~~p~i~~~~-~~~a~kf~~qIAFN~~P~Id~f~~-dGsGYT~EE~Km~~Et 231 (350)
T TIGR01296 154 STYQAVSGAGNKGVEELKNQTKAVLEGKEKEPEIDALE-VLKAKKFPYQIAFNAIPHIDKFKD-DGSGYTKEETKMLFET 231 (350)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-CCCCCCCCCCCHHCCCCCCCCCCC-CCCCCCHHHHHHHHHH
T ss_conf 72200354279999998999999852458885555430-688888267503000010474122-8786680667889863
Q ss_pred HHHHHCCCCCCCHHHHCCCCCEEE----------CC-CCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 567617823370988348897897----------79-9878999999996799589998069
Q gi|255764505|r 273 FRNFHKDLNTLSVEDVMIKNPKVI----------LE-DTLLTVAMQLLRQHNISVLMVVDDC 323 (341)
Q Consensus 273 rR~l~~~~~~~~v~~iMt~~p~~I----------~~-d~~i~eAl~lM~~~kI~~LpVVD~~ 323 (341)
|+.++ ..+.+++-=.-|=|++. .. +-+..|+-+++.+ -.-+.|+|+.
T Consensus 232 ~KImg--~~d~~vSaTCVRvPVf~GHS~S~~iEf~~d~~~~e~~~E~Lk~--ApGV~~~D~P 289 (350)
T TIGR01296 232 RKIMG--IPDLKVSATCVRVPVFTGHSESVNIEFEKDEISPEDVREVLKN--APGVVVIDDP 289 (350)
T ss_pred HHHCC--CCCCCEEEEEEECCCHHCCHHHHHHHHCCCCCCHHHHHHHHCC--CCEEEEEECC
T ss_conf 43238--8774451578874111111232100111688788899997347--9867998768
No 303
>TIGR01966 RNasePH ribonuclease PH; InterPro: IPR002381 Prokaryotic ribonuclease PH (2.7.7.56 from EC) (RNase PH) is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates . There is a similar protein in Caenorhabditis elegans that belongs to this group. More information about these proteins can be found at Protein of the Month: RNA Exosomes .; GO: 0000049 tRNA binding, 0004549 tRNA-specific ribonuclease activity, 0008033 tRNA processing.
Probab=63.28 E-value=12 Score=17.84 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=36.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEEC-CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 368780788766666320456279984478895452145337688615-54324752178999-9999999999999985
Q gi|255764505|r 119 SWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEP-ESCPHGLAPTTSAI-MQLAIGDALAIALLES 196 (341)
Q Consensus 119 S~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~-Ea~~~~~aPt~Stt-~~l~~~Dalav~l~~~ 196 (341)
=.||+|.||-+++=-+=+-=+-.=++-.+ .+.|++.|-+ .+... |+|.| ++-|+-||+. .|+.
T Consensus 81 K~~GRTqEIQRLIGRaLRavvDl~aLGEr---------TI~iDCDVlQADGGTR----TAsITGAfVAL~dAi~--~L~~ 145 (237)
T TIGR01966 81 KQSGRTQEIQRLIGRALRAVVDLEALGER---------TIWIDCDVLQADGGTR----TASITGAFVALADAIK--KLQK 145 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCE---------EEEEECCEEECCCCCH----HHHHHHHHHHHHHHHH--HHHH
T ss_conf 87875056777888898877346234850---------2798533433887612----4678889999999999--9985
Q ss_pred CC
Q ss_conf 03
Q gi|255764505|r 197 RN 198 (341)
Q Consensus 197 ~~ 198 (341)
|+
T Consensus 146 ~~ 147 (237)
T TIGR01966 146 RG 147 (237)
T ss_pred CC
T ss_conf 78
No 304
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=62.77 E-value=12 Score=17.78 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 47078983687807887666663204562799844
Q gi|255764505|r 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 112 ~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
-|+++.---.|.+.++...++.+...|+++|-.++
T Consensus 66 ~Dvvf~a~p~~~s~~~~~~~~~~~~~g~~VIDlSa 100 (122)
T smart00859 66 VDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 99999938827889999988988756987986847
No 305
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.72 E-value=12 Score=17.77 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=19.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79959999338137999999999875088611
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTPSF 94 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~ 94 (341)
-| ||.+.|.|+||.-+-+ -|.+-|...+
T Consensus 6 ~k-~v~V~GlG~sG~s~~~---~L~~~G~~v~ 33 (438)
T PRK03806 6 GK-NVVIIGLGLTGLSCVD---FFLARGVTPR 33 (438)
T ss_pred CC-EEEEEEECHHHHHHHH---HHHHCCCEEE
T ss_conf 99-8999945788899999---9997899699
No 306
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.22 E-value=12 Score=17.71 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=54.1
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHHCCCCCC-----CCCCCC-H-HHHCCC---------EEECCCEEEEE-ECCCCC
Q ss_conf 5999933813----7999999999875088611-----012330-2-320230---------12104707898-368780
Q gi|255764505|r 66 RVVITGIGKS----GHIGSKLASTLASTGTPSF-----FVHAAE-A-SHGDLG---------MITRDDLIIVL-SWSGSS 124 (341)
Q Consensus 66 rv~~~GvG~S----~~ia~k~a~tl~s~G~~a~-----~~~~~e-a-~Hgdlg---------~i~~~Dv~i~i-S~SG~t 124 (341)
.|.|+|-++. +.+.+|++.. +|++-+ ..|.+. + +-..+| =+..-|+++.+ ||-.++
T Consensus 107 sia~~gs~~~~nEe~yl~~kf~r~---lGt~nid~~aRlChsstv~gl~~tfG~ga~tn~~~Di~~ad~ili~G~N~ae~ 183 (649)
T cd02752 107 SIAFLGSAKLSNEECYLIRKFARA---LGTNNLDHQARIUHSPTVAGLANTFGRGAMTNSWNDIKNADVILVMGGNPAEA 183 (649)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEECCCCHHC
T ss_conf 079986688783799999999998---29875467666452789999998607898888976797599999989880011
Q ss_pred HHH-HHHHHHHH-CCCCCEEEEECCCCCHHHHCCCCEEEEEEE
Q ss_conf 788-76666632-045627998447889545214533768861
Q gi|255764505|r 125 DEL-KAILYYAR-RFSIPLIAITSENKSVVACHADIVLTLPKE 165 (341)
Q Consensus 125 ~e~-~~~~~~~k-~~~~~iI~iT~~~~S~la~~ad~~l~~~~~ 165 (341)
.-+ -..+..+| ++|+++|.|- -..+..++.||+.+.+.-.
T Consensus 184 hPv~~~~i~~ak~k~GaKlIVVD-PR~t~TA~~AD~~l~iRPG 225 (649)
T cd02752 184 HPVSFKWILEAKEKNGAKLIVVD-PRFTRTAAKADLYVPIRSG 225 (649)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEC-CCCCCHHHHHCEECCCCCC
T ss_conf 75058999999986798599987-8876336750851176899
No 307
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=62.10 E-value=9.2 Score=18.62 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=26.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 78983687807887666663204562799844
Q gi|255764505|r 115 IIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 115 ~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
+++.|+||.|.=+-++++.++++|.++-.|-.
T Consensus 7 ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 7 IVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99627997342899999999757937999986
No 308
>KOG2684 consensus
Probab=61.83 E-value=12 Score=17.73 Aligned_cols=27 Identities=33% Similarity=0.231 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 366999999998279959999338137
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~ 76 (341)
...+..++.++.++|-=|+++|.|=|-
T Consensus 75 ~~t~~~~~~~l~kaKrIvVlTGAGVSv 101 (412)
T KOG2684 75 FNTLADFVKLLKKAKRIVVLTGAGVSV 101 (412)
T ss_pred CCCHHHHHHHHHHCCEEEEEECCCEEE
T ss_conf 442999999998667499995784453
No 309
>KOG0238 consensus
Probab=60.83 E-value=12 Score=17.83 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=5.3
Q ss_pred ECCCCCHHHHHHHHHH
Q ss_conf 3687807887666663
Q gi|255764505|r 119 SWSGSSDELKAILYYA 134 (341)
Q Consensus 119 S~SG~t~e~~~~~~~~ 134 (341)
-+..+..+-+.-++.+
T Consensus 388 vwg~dR~~Al~kl~~a 403 (670)
T KOG0238 388 VWGKDREEALNKLKDA 403 (670)
T ss_pred EECCCHHHHHHHHHHH
T ss_conf 7648789999999999
No 310
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.01 E-value=13 Score=17.44 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 982799599993381379999999998750886
Q gi|255764505|r 60 IKAIKGRVVITGIGKSGHIGSKLASTLASTGTP 92 (341)
Q Consensus 60 i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~ 92 (341)
+++-| ||.++|.|.||.-+-+ -|...|..
T Consensus 11 ~l~~k-kv~i~GlG~sG~a~a~---~L~~~g~~ 39 (458)
T PRK01710 11 FIKNK-KVAVVGIGVSNIPLIK---FLVKLGAK 39 (458)
T ss_pred HHCCC-EEEEEEECHHHHHHHH---HHHHCCCE
T ss_conf 97899-6999978788999999---99978897
No 311
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=59.72 E-value=6.2 Score=19.85 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=27.5
Q ss_pred EECCCCCHHHHHHHHH-HHCCCCCEEEEECCCCCHHHHCC
Q ss_conf 8368780788766666-32045627998447889545214
Q gi|255764505|r 118 LSWSGSSDELKAILYY-ARRFSIPLIAITSENKSVVACHA 156 (341)
Q Consensus 118 iS~SG~t~e~~~~~~~-~k~~~~~iI~iT~~~~S~la~~a 156 (341)
.|.||||+|+-..++. +.+.|..+==|. ..=+||+..+
T Consensus 8 ~slSGNT~eVA~~I~~~l~~~G~eVDW~~-~r~~~La~~p 46 (145)
T TIGR01754 8 LSLSGNTKEVADIIRDILEKDGHEVDWVE-FRISTLADAP 46 (145)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCEEEEEE-ECCHHHHCCC
T ss_conf 41487778999999999984797767664-0004642467
No 312
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=59.30 E-value=14 Score=17.36 Aligned_cols=56 Identities=32% Similarity=0.500 Sum_probs=37.1
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECC-CEEEEEECCCCCHHHHHHHHH
Q ss_conf 338137999999999875088611012330232023012104-707898368780788766666
Q gi|255764505|r 71 GIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRD-DLIIVLSWSGSSDELKAILYY 133 (341)
Q Consensus 71 GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~-Dv~i~iS~SG~t~e~~~~~~~ 133 (341)
|+|||-..+ -+|..|++.|.+...++ .|+|+-.-+ |.+|.=.-.|-+..+..++..
T Consensus 10 GvGkt~~~~-nLa~~la~~G~~vll~D------~D~g~an~~~D~viiD~~aG~~~~~~~~~~~ 66 (139)
T cd02038 10 GVGKTNISA-NLALALAKLGKRVLLLD------ADLGLANLDYDYIIIDTGAGISDNVLDFFLA 66 (139)
T ss_pred CCCHHHHHH-HHHHHHHHCCCCEEEEE------CCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 983999999-99999997899699998------9899965799999994899987789999995
No 313
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.96 E-value=14 Score=17.32 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=70.5
Q ss_pred EECCCEEEEEECC-CCCHH--HHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 2104707898368-78078--87666663204562799844788954521453376886155432475217899999999
Q gi|255764505|r 109 ITRDDLIIVLSWS-GSSDE--LKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 109 i~~~Dv~i~iS~S-G~t~e--~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~ 185 (341)
+..-|++|++... -++.- ....+..++++|+++|.|-- ..+.+++.||..|.+. |-+-....|++
T Consensus 158 ~~~a~~il~~G~Np~~~~~~~~~~~~~~a~~~GaklividP-r~t~ta~~Ad~~l~i~-----------PGTD~AL~lai 225 (477)
T cd02759 158 WENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDP-RLTWLAARADLWLPIR-----------PGTDAALALGM 225 (477)
T ss_pred HHHCCEEEEECCCHHHHCCHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHCEEEECC-----------CCCCHHHHHHH
T ss_conf 86498999986876773873999999999976995999826-8882688615324217-----------77629988666
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCC-CCCCEEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999999985033878887531100111124-333332104-7543055100238888987410466200
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDVMHS-GDSIPLVKIGCPLIDAITILSEKRFGCV 254 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~-~~~ip~V~~~~si~eal~~m~~~~~g~v 254 (341)
...| -.++.--++|...|--|- ..| -.+++.--. ..++-=| +...|+++.+.+.+.+-.++
T Consensus 226 ~~~i-----i~~~~~D~~fi~~~t~gf--d~l~~~~~~~tpe~aa~itGv-~~~~I~~~A~~~a~~~~~~i 288 (477)
T cd02759 226 LNVI-----INEGLYDKDFVENWCYGF--EELAERVQEYTPEKVAEITGV-PAEKIRKAARLYATAKPACI 288 (477)
T ss_pred HHHH-----HHCCCCCHHHHHHCCCHH--HHHHHHHHCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEE
T ss_conf 6688-----766875804566335629--999985334897776666399-89999999999971797899
No 314
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=58.89 E-value=11 Score=18.02 Aligned_cols=92 Identities=21% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC--CHHHHCCCE-------EECC---CEEEEEECCCCCHHHHHH
Q ss_conf 7995999933813799999999987508861101233--023202301-------2104---707898368780788766
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA--EASHGDLGM-------ITRD---DLIIVLSWSGSSDELKAI 130 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~--ea~Hgdlg~-------i~~~---Dv~i~iS~SG~t~e~~~~ 130 (341)
.+ +|++.|=|+ ||..=+.+|...|-.-..+.|. +.+. +++. ..++ +..+.+.-... +|+.+.
T Consensus 13 ~k-~vLVvGGG~---VA~rK~~~Ll~~ga~VtVvsp~~~~el~-~l~~i~~~~r~~~~~dl~~~~lViaATdd-~~lN~~ 86 (157)
T PRK06719 13 NK-VVVIIGGGK---IAYRKASGLKDTGAFVTVVSPEICEEMK-ELPYITWKQKTFSNDDIKDAHLIYAATNQ-HAVNMM 86 (157)
T ss_pred CC-EEEEECCCH---HHHHHHHHHHHCCCEEEEECCCCCHHHH-HCCCEEEECCCCCHHHHCCCEEEEECCCC-HHHHHH
T ss_conf 98-799988989---9999999998787969999998689998-45570887046784683784399986899-899999
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEEC
Q ss_conf 666320456279984478895452145337688615
Q gi|255764505|r 131 LYYARRFSIPLIAITSENKSVVACHADIVLTLPKEP 166 (341)
Q Consensus 131 ~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~ 166 (341)
+..+.+.+. ++ ++.+.+ ..||+....-+.+
T Consensus 87 i~~~a~~~~-lv---N~~d~~--~~~dF~~Paiv~r 116 (157)
T PRK06719 87 VKQAAHDFQ-WV---NVVSDG--TESSFHTPGVIRN 116 (157)
T ss_pred HHHHHHHCC-CE---EEECCC--CCCCEEEEEEEEE
T ss_conf 999997789-58---982898--8897687038985
No 315
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=58.65 E-value=14 Score=17.28 Aligned_cols=86 Identities=24% Similarity=0.350 Sum_probs=57.1
Q ss_pred HHHCCC-CEEEEECCCHH--HHHHHHHHHHHHCCCCCCCCCCCCHHHH---CCCEEECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 982799-59999338137--9999999998750886110123302320---23012104707898368780788766666
Q gi|255764505|r 60 IKAIKG-RVVITGIGKSG--HIGSKLASTLASTGTPSFFVHAAEASHG---DLGMITRDDLIIVLSWSGSSDELKAILYY 133 (341)
Q Consensus 60 i~~~~g-rv~~~GvG~S~--~ia~k~a~tl~s~G~~a~~~~~~ea~Hg---dlg~i~~~Dv~i~iS~SG~t~e~~~~~~~ 133 (341)
....+| -|-|||.-.|| -||..+...|...|...+.|+.-+.=|| || .+|.-++...+.++.+.
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dL----------gFs~edR~eniRRvaev 87 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDL----------GFSREDRIENIRRVAEV 87 (197)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCC----------CCCHHHHHHHHHHHHHH
T ss_conf 72799859996468888787999999999997597589855746765005788----------97867899999999999
Q ss_pred HHCC-CCCEEEEECCCCCHHHHCC
Q ss_conf 3204-5627998447889545214
Q gi|255764505|r 134 ARRF-SIPLIAITSENKSVVACHA 156 (341)
Q Consensus 134 ~k~~-~~~iI~iT~~~~S~la~~a 156 (341)
||.. .+-+|.|++. =||....-
T Consensus 88 Akll~daG~iviva~-ISP~r~~R 110 (197)
T COG0529 88 AKLLADAGLIVIVAF-ISPYREDR 110 (197)
T ss_pred HHHHHHCCEEEEEEE-ECCCHHHH
T ss_conf 999987890899975-17309999
No 316
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.16 E-value=14 Score=17.23 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=15.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 799599993381379999999998750886
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTP 92 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~ 92 (341)
.| ||.+.|+|+||.-+ |.-|.+-|..
T Consensus 9 ~k-~i~viGlG~sG~s~---a~~L~~~G~~ 34 (450)
T PRK02472 9 NK-KVLVLGLAKSGYAA---AKLLHKLGAN 34 (450)
T ss_pred CC-EEEEEEECHHHHHH---HHHHHHCCCE
T ss_conf 99-89999778999999---9999988698
No 317
>pfam01936 DUF88 Protein of unknown function DUF88. This highly conserved bacterial protein has no known function. The alignment contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase (Bateman A pers. obs).
Probab=57.22 E-value=15 Score=17.12 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCCCE-EEEECCCHH-HHHHHHHHHHHHCCCCCCCCCCC----CHHH----HCC-CEE--ECCCEEEEE
Q ss_conf 6999999998279959-999338137-99999999987508861101233----0232----023-012--104707898
Q gi|255764505|r 52 QFHCAVEKIKAIKGRV-VITGIGKSG-HIGSKLASTLASTGTPSFFVHAA----EASH----GDL-GMI--TRDDLIIVL 118 (341)
Q Consensus 52 ~~~~av~~i~~~~grv-~~~GvG~S~-~ia~k~a~tl~s~G~~a~~~~~~----ea~H----gdl-g~i--~~~Dv~i~i 118 (341)
++.+..+.+.+ .|++ ....-|.-. .--+++-.-|.+.|..-...... .+.. .|+ -.. .+-|.++.+
T Consensus 18 d~~~l~~~i~~-~g~v~~~~aY~~~~~~~~~~~~~~L~~~Gi~v~~~~~~~~~Kn~~D~~l~vD~~~~~~~~~~d~~ilv 96 (140)
T pfam01936 18 DYRKVLEEIKS-GGEVVRARAYGDWSDPKLRKFPDALSSTGIPVQHKPLTKSGKNAVDVGLAVDALELAYDNNPDTFVLV 96 (140)
T ss_pred CHHHHHHHHHC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999982-79789999994788610477999999869718994551587650349999999999733899989999
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEE--CCCCCHHHHCCCCEEE
Q ss_conf 368780788766666320456279984--4788954521453376
Q gi|255764505|r 119 SWSGSSDELKAILYYARRFSIPLIAIT--SENKSVVACHADIVLT 161 (341)
Q Consensus 119 S~SG~t~e~~~~~~~~k~~~~~iI~iT--~~~~S~la~~ad~~l~ 161 (341)
|..| +...+++.+|++|..++.+. .+....|.+.||..+.
T Consensus 97 sgD~---Df~~~~~~lr~~g~~v~~~~~~~~~s~~L~~~~d~f~~ 138 (140)
T pfam01936 97 SGDG---DFAPLLERLRERGKRVEVLGAEPSTSDALINAADRFID 138 (140)
T ss_pred ECCH---HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCEEEE
T ss_conf 2674---07999999998899999996588787999986692494
No 318
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.78 E-value=15 Score=17.07 Aligned_cols=91 Identities=14% Similarity=0.250 Sum_probs=42.5
Q ss_pred EEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHH-HHH-CCCCCCCHHHHCCCCCEEECCCCCHHHHHHHHH
Q ss_conf 510023888898741046620000004323232412340356-761-782337098834889789779987899999999
Q gi|255764505|r 233 VKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFR-NFH-KDLNTLSVEDVMIKNPKVILEDTLLTVAMQLLR 310 (341)
Q Consensus 233 V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR-~l~-~~~~~~~v~~iMt~~p~~I~~d~~i~eAl~lM~ 310 (341)
++....+.+|++.|.+.+.|.++..+++++=+|++.. ++. .+. ++.+...+..-+.. | ...-..--+.+++.
T Consensus 65 cdcg~qL~~Am~~Ia~~g~GviVyl~qegr~~gl~~k--i~a~~lq~~g~dt~~an~~lg~-~---~D~R~yg~gaQIL~ 138 (198)
T PRK00393 65 CDCGFQLEEALKRIAEEGGGILLYLRQEGRGIGLLNK--IRAYALQDQGLDTVEANHQLGF-A---ADERDYTLAADMLK 138 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH--HHHHHHHHCCCCCHHHHHCCCC-C---CHHHHHHHHHHHHH
T ss_conf 9836899999999975697699998278987144455--6665555428860434430488-7---21321679999999
Q ss_pred HCCCCEEEEE-ECCCEEEEE
Q ss_conf 6799589998-069848999
Q gi|255764505|r 311 QHNISVLMVV-DDCQKAIGI 329 (341)
Q Consensus 311 ~~kI~~LpVV-D~~~~lvGi 329 (341)
+-+|+.+-++ |+..++.|+
T Consensus 139 dLGV~kmrLLTnnP~K~~gL 158 (198)
T PRK00393 139 ALGVKEVRLLTNNPKKVEAL 158 (198)
T ss_pred HCCCCEEEECCCCHHHHHHH
T ss_conf 75998599866980532024
No 319
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=56.55 E-value=14 Score=17.22 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=46.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC--C---HHH--HCCCEE----EC---CCEEEEEECCCCCHHHHH
Q ss_conf 995999933813799999999987508861101233--0---232--023012----10---470789836878078876
Q gi|255764505|r 64 KGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA--E---ASH--GDLGMI----TR---DDLIIVLSWSGSSDELKA 129 (341)
Q Consensus 64 ~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~--e---a~H--gdlg~i----~~---~Dv~i~iS~SG~t~e~~~ 129 (341)
+=||++.|=| -||..=+.+|...|-.-..+.|. + .+. |.+-.+ .+ .|..++|..+....-=-+
T Consensus 24 klkvLVVGGG---~VA~RKi~~Ll~agA~VtVVSP~~~~el~~L~~~~~I~~i~r~y~~~dL~~~~LVIaATdd~~lN~~ 100 (222)
T PRK05562 24 KIKVLVIGGG---KAAFIKGKTFLKKGCYVEILSKEFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIIIATDDEELNNK 100 (222)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCCEEEEECCCHHHHHH
T ss_conf 7669999987---9999999999878998999878668899999975986999686797780887399994798899999
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCC
Q ss_conf 666632045627998447889545214533768861554324752
Q gi|255764505|r 130 ILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLA 174 (341)
Q Consensus 130 ~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~a 174 (341)
+.+.|+++|..+...+. | ..|++.+..-+.+ +|+-+|
T Consensus 101 I~~~a~~~~ilvNvvdd-p-----~~~~fi~Paiv~R--g~L~IA 137 (222)
T PRK05562 101 IRKHCDRLYKLYIDCSD-F-----KKGLCVIPYQRSS--KNMVFA 137 (222)
T ss_pred HHHHHHHHCCEEEECCC-C-----CCCCEEECEEEEE--CCEEEE
T ss_conf 99999980998898578-8-----7681797709972--897999
No 320
>pfam00205 TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain. The central domain of TPP enzymes contains a 2-fold Rossman fold.
Probab=56.55 E-value=15 Score=17.04 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=28.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-HHCCCCCCC
Q ss_conf 999999982799599993381379999999998-750886110
Q gi|255764505|r 54 HCAVEKIKAIKGRVVITGIGKSGHIGSKLASTL-ASTGTPSFF 95 (341)
Q Consensus 54 ~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl-~s~G~~a~~ 95 (341)
.+++++|.+++-=++++|-|....-|.+-...| ..+|+|.+.
T Consensus 2 ~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (138)
T pfam00205 2 EKAAELLAAAKRPVILVGGGVRRSGASEELRALAEKLGIPVVT 44 (138)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999968991999897835221899999999984998792
No 321
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=55.99 E-value=15 Score=16.98 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=58.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC--CH----------HHHCCCE-----------EECCCEEEEEEC
Q ss_conf 995999933813799999999987508861101233--02----------3202301-----------210470789836
Q gi|255764505|r 64 KGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA--EA----------SHGDLGM-----------ITRDDLIIVLSW 120 (341)
Q Consensus 64 ~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~--ea----------~Hgdlg~-----------i~~~Dv~i~iS~ 120 (341)
+-||.+.|.| -|+..+++.|+..|....|+.-. |+ .||+.-. +.+-|++|.-.+
T Consensus 5 ~~kI~IiGaG---AiG~~~a~~L~~aG~~V~li~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~viv~vK 81 (313)
T PRK06249 5 TPRIAIIGTG---AIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHHCCCCCEEEEECC
T ss_conf 8889999914---9999999999966995699967559999868859996698289768402369778399658999536
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCC--HHHHC
Q ss_conf 878078876666632045627998447889--54521
Q gi|255764505|r 121 SGSSDELKAILYYARRFSIPLIAITSENKS--VVACH 155 (341)
Q Consensus 121 SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S--~la~~ 155 (341)
|..+.++.+.++.+-..+..++.+-+--.+ .|++.
T Consensus 82 s~~~~~~~~~l~~~~~~~t~il~lQNG~g~~~~l~~~ 118 (313)
T PRK06249 82 TTANALLAPLIPQVAAPGAKVLLLQNGLGVEEQLRPL 118 (313)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 6778999998786448995899944766618888753
No 322
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=55.86 E-value=15 Score=16.96 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=36.2
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCCHHHHCCCCEE
Q ss_conf 047078983687807887666663204562799844--78895452145337
Q gi|255764505|r 111 RDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITS--ENKSVVACHADIVL 160 (341)
Q Consensus 111 ~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~--~~~S~la~~ad~~l 160 (341)
.=|.++.+|.- .+...+++.+|+.|.+++.+.. .....|.+.||..+
T Consensus 99 ~~D~~vLvSgD---~Df~p~v~~lr~~Gk~V~v~~~~~~~s~~L~~~~d~fi 147 (149)
T cd06167 99 RIDTIVLVSGD---SDFVPLVERLRELGKRVIVVGFEAKTSRELRKAADRFI 147 (149)
T ss_pred CCCEEEEEECC---HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCE
T ss_conf 99989999577---72799999999879999999748878699999711117
No 323
>PRK08116 hypothetical protein; Validated
Probab=55.72 E-value=16 Score=16.95 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEE---ECCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999---338137999999999875088611012330
Q gi|255764505|r 67 VVIT---GIGKSGHIGSKLASTLASTGTPSFFVHAAE 100 (341)
Q Consensus 67 v~~~---GvG~S~~ia~k~a~tl~s~G~~a~~~~~~e 100 (341)
++|+ |.|||.+.+ -+|..+..-|.+..|++..+
T Consensus 111 Lll~G~~GtGKThLa~-aIa~~l~~~g~~V~~~~~~~ 146 (262)
T PRK08116 111 LLLWGSPGNGKTYLAA-AIANELIEKGVPVVFVNVPE 146 (262)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHCCCEEEEEEHHH
T ss_conf 8998989998999999-99999998799399988999
No 324
>KOG2004 consensus
Probab=55.32 E-value=16 Score=16.91 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEE----ECCCHHHHHHHHHHHHHH
Q ss_conf 55332457999999999999999999999720011366999999998279959999----338137999999999875
Q gi|255764505|r 15 GHSLMKNSTVQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVIT----GIGKSGHIGSKLASTLAS 88 (341)
Q Consensus 15 ~~~~~~~~~~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~----GvG~S~~ia~k~a~tl~s 88 (341)
+....+|-.+..|++.++..--++.++++++= +|.++..+-.+.+|+|+.+ ||||.. ||+-+|..|.+
T Consensus 393 gk~S~En~dl~~Ak~iLdeDHYgm~dVKeRIL-----EfiAV~kLrgs~qGkIlCf~GPPGVGKTS-I~kSIA~ALnR 464 (906)
T KOG2004 393 GKSSTENLDLARAKEILDEDHYGMEDVKERIL-----EFIAVGKLRGSVQGKILCFVGPPGVGKTS-IAKSIARALNR 464 (906)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHHHHHHCCCCCCCEEEEECCCCCCCCC-HHHHHHHHHCC
T ss_conf 87873530379898763465301688999999-----99998751466788379986899877321-89999998487
No 325
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=55.18 E-value=16 Score=16.89 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=31.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 59999338137999999999875088611012330232023012104707898368780788766666320456279984
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
+|.++|+|..|+.|-++|.-+ +--|++++.|.+..| .|++.|+..+.-+
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~-------------------------ga~Via~~~~~~K~e------~a~~lGAd~~i~~ 217 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAM-------------------------GAEVIAITRSEEKLE------LAKKLGADHVINS 217 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHC-------------------------CCEEEEEECCHHHHH------HHHHHCCCEEEEC
T ss_conf 999987748999999999986-------------------------996999957877999------9998488289976
Q ss_pred C
Q ss_conf 4
Q gi|255764505|r 146 S 146 (341)
Q Consensus 146 ~ 146 (341)
+
T Consensus 218 ~ 218 (339)
T COG1064 218 S 218 (339)
T ss_pred C
T ss_conf 7
No 326
>PRK10696 C32 tRNA thiolase; Provisional
Probab=54.80 E-value=16 Score=16.96 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCCEEECCC-EEEEEECCCCCHHHHHHHHHHHCC---CCCEEEEECC------CCCHHHHCC
Q ss_conf 230121047-078983687807887666663204---5627998447------889545214
Q gi|255764505|r 105 DLGMITRDD-LIIVLSWSGSSDELKAILYYARRF---SIPLIAITSE------NKSVVACHA 156 (341)
Q Consensus 105 dlg~i~~~D-v~i~iS~SG~t~e~~~~~~~~k~~---~~~iI~iT~~------~~S~la~~a 156 (341)
|.+||.+|| |++++|..--|--++.++..++++ +-.+++++=+ +..+|.+++
T Consensus 32 dy~MIedGDRVlVglSGGKDS~~LL~iL~~Lq~~api~FeLvAv~lD~~~pGf~~~~L~~yl 93 (311)
T PRK10696 32 DFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPEYL 93 (311)
T ss_pred HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 85877899999998267888999999999999858998559999837899998806889999
No 327
>pfam00265 TK Thymidine kinase.
Probab=54.56 E-value=12 Score=17.82 Aligned_cols=48 Identities=21% Similarity=0.130 Sum_probs=36.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEE
Q ss_conf 707898368780788766666320456279984478895452145337688
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP 163 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~ 163 (341)
+++++=-+||.|.|+++.+..++..|-+++.++...+.. +++-.+...
T Consensus 4 ~~i~GpMfsGKTteLi~~~~~~~~~gkkvl~i~p~~D~R---~~~~~i~Sh 51 (175)
T pfam00265 4 ELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNR---YGTGKVVTH 51 (175)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCC---CCCCEEECC
T ss_conf 999925177899999999999998799399994611277---899969889
No 328
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=54.45 E-value=16 Score=16.81 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=56.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC-----C--EEECCCEEEEEECCCCCHHH--HHHHHHHH
Q ss_conf 959999338137999999999875088611012330232023-----0--12104707898368780788--76666632
Q gi|255764505|r 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDL-----G--MITRDDLIIVLSWSGSSDEL--KAILYYAR 135 (341)
Q Consensus 65 grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdl-----g--~i~~~Dv~i~iS~SG~t~e~--~~~~~~~k 135 (341)
.-|+++|+|.|+.+..++ -.+.....||-. | +-.|+-.||+++--|-+--+ -.++..+|
T Consensus 44 ~~vvvsGIGCS~r~~~Y~------------~~~~~ht~HGRala~AtGiK~AnPdl~Viv~~GDGD~~aIGgnH~iHAaR 111 (281)
T PRK09628 44 DVCVVSGIGCSGRFSSYV------------NCNTVHTTHGRAVAYATGIKLANPSKHVIVVSGDGDGLAIGGNHTIHGCR 111 (281)
T ss_pred CEEEEECCCCCCCCCCEE------------ECCCEEHHHCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCHHHHHHHHHH
T ss_conf 489994787353033717------------63726311125088899999868997699981574042030889999998
Q ss_pred CC--------CCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 04--------562799844788954521453376886155432475
Q gi|255764505|r 136 RF--------SIPLIAITSENKSVVACHADIVLTLPKEPESCPHGL 173 (341)
Q Consensus 136 ~~--------~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~ 173 (341)
++ +..+-++|+..-||-.......-..|...-..|++.
T Consensus 112 RN~dit~Iv~NN~iYGmTgGQ~SPTTp~G~~T~TtP~G~~e~p~d~ 157 (281)
T PRK09628 112 RNIDLNHILINNFIYGLTNSQTSPTTPKGMWTVTAQWGNIDPNFDA 157 (281)
T ss_pred HCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 0899289998777230378856989999875666899987899699
No 329
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=54.41 E-value=16 Score=16.80 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCCCEEEECCCC-C--EEEEEEECCCHHHHHHCCCCC--CCH---HHHCCCCCEEE-------CCCCCHHHHHHHHHHCC
Q ss_conf 466200000043-2--323241234035676178233--709---88348897897-------79987899999999679
Q gi|255764505|r 249 KRFGCVAVVDEG-Q--KLKGIITEGDIFRNFHKDLNT--LSV---EDVMIKNPKVI-------LEDTLLTVAMQLLRQHN 313 (341)
Q Consensus 249 ~~~g~v~Vvd~~-~--~liGIITdgDlrR~l~~~~~~--~~v---~~iMt~~p~~I-------~~d~~i~eAl~lM~~~k 313 (341)
...|..+++|+. + -=.|+|. .-+||.-+-.+.. ..- ...-...|.++ +-.+++..+++......
T Consensus 392 ~~tGsFILID~~tn~TVaAGmI~-~alrrs~ni~w~~~~V~~~~R~~~~g~~~~~iw~tGlsgsGKstiA~~le~~L~~~ 470 (613)
T PRK05506 392 RTTGSFILIDRLTNATVGAGMID-FALRRATNVHWQALDVTREARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHAL 470 (613)
T ss_pred CCCCCEEEEECCCCCEEEEEEEC-HHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 66665899988999578898370-55427678642303379999999748997699997789897479999999999977
Q ss_pred CCEEEEEECCC
Q ss_conf 95899980698
Q gi|255764505|r 314 ISVLMVVDDCQ 324 (341)
Q Consensus 314 I~~LpVVD~~~ 324 (341)
=.+..++|.++
T Consensus 471 g~~~~~LDGd~ 481 (613)
T PRK05506 471 GRHTYVLDGDN 481 (613)
T ss_pred CCCEEEECCHH
T ss_conf 99879988089
No 330
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=54.35 E-value=0.31 Score=29.29 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=7.6
Q ss_pred CEEEEEECCCEEEEEE
Q ss_conf 5899980698489998
Q gi|255764505|r 315 SVLMVVDDCQKAIGIV 330 (341)
Q Consensus 315 ~~LpVVD~~~~lvGiI 330 (341)
...|+.- +++.+|-|
T Consensus 297 nr~pI~~-~~~~~GaI 311 (537)
T COG3290 297 NRVPIRS-GGQIVGAI 311 (537)
T ss_pred EECCEEE-CCEEEEEE
T ss_conf 8523788-89776899
No 331
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=54.13 E-value=15 Score=16.96 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=47.7
Q ss_pred CEEEEECCCHHHHH----HHHHHHHHHC-CCCCCCCCCCC--HHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 59999338137999----9999998750-88611012330--23202301210470789836878078876666632045
Q gi|255764505|r 66 RVVITGIGKSGHIG----SKLASTLAST-GTPSFFVHAAE--ASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFS 138 (341)
Q Consensus 66 rv~~~GvG~S~~ia----~k~a~tl~s~-G~~a~~~~~~e--a~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~ 138 (341)
.++=.-+|-.+... +++..++... ..| ..++.++ ++...|- ..++- -|.=|-|||...+-.+++.+|+.|
T Consensus 40 ~~LDVN~g~~~~de~~~m~~~v~~iq~~~~~P-l~iDS~~~~aiEaaLk-~~~Gr-~iINSis~e~er~~~i~pLakkyg 116 (268)
T PRK07535 40 NYLDVNAGTAVEEEPETMEWLVETVQEVVDVP-LCIDSPNPEAIEAGLK-VAKGR-PLINSVSAEEERLEAVLPLVKKYN 116 (268)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-EEECCCCHHHHHHHHH-HCCCC-CEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 98996089877468999999999997338999-6761898999999999-77999-726600388056999999999849
Q ss_pred CCEEEEECCCC
Q ss_conf 62799844788
Q gi|255764505|r 139 IPLIAITSENK 149 (341)
Q Consensus 139 ~~iI~iT~~~~ 149 (341)
+.+|+++-..+
T Consensus 117 a~vI~L~~de~ 127 (268)
T PRK07535 117 APVVALTMDDT 127 (268)
T ss_pred CEEEEEECCCC
T ss_conf 97999942899
No 332
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=54.08 E-value=16 Score=16.77 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=56.1
Q ss_pred HHHHCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCC
Q ss_conf 72001136699999999827-99599993381379999999998750886110123302320230121047078983687
Q gi|255764505|r 44 SLQGELSFQFHCAVEKIKAI-KGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSG 122 (341)
Q Consensus 44 ~l~~~~~~~~~~av~~i~~~-~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG 122 (341)
++.+.....+.+++..-.+. ...-++.|.|.+..|.. ++.+|..-|-......|+-..+.....+...+++-.--..+
T Consensus 59 rYPd~~~~~Lr~~lA~~~gv~~~~~Ii~GnGSdElI~~-i~~~~~~pgd~vl~~~Ptf~~Y~~~a~~~g~~~~~vpl~~d 137 (356)
T PRK04870 59 RYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQL-IALACAKPGAKVLAPVPGFVMYRMSAKFAGLEFVGVPLTAD 137 (356)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH-HHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 79899899999999998687987769981679999999-99998189898997677766899999982987999846876
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCC
Q ss_conf 8078876666632045627998447889545214
Q gi|255764505|r 123 SSDELKAILYYARRFSIPLIAITSENKSVVACHA 156 (341)
Q Consensus 123 ~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~a 156 (341)
-+-++-.++...++...++|-| +|||+|-+..-
T Consensus 138 ~~~d~~~~~~~i~~~~~klv~i-~nPNNPTG~~~ 170 (356)
T PRK04870 138 FTLDLPAMLAAIAEHRPALVYL-AYPNNPTGNLF 170 (356)
T ss_pred CCCCHHHHHHHHCCCCCCEEEE-CCCCCCCCCCC
T ss_conf 5621288998741468738997-68999766336
No 333
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.05 E-value=16 Score=16.95 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC--CHH-----HHCC---------CEEECCCEEEEEECCCCCHH
Q ss_conf 7995999933813799999999987508861101233--023-----2023---------01210470789836878078
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA--EAS-----HGDL---------GMITRDDLIIVLSWSGSSDE 126 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~--ea~-----Hgdl---------g~i~~~Dv~i~iS~SG~t~e 126 (341)
.+ +|++.|-| .+|..=+.+|...|-.-..+.|. +.+ .|.+ +-+..-+++|+-+ +. ++
T Consensus 10 gk-~vLVVGGG---~vA~rK~~~Ll~~gA~VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaAT--~d-~~ 82 (202)
T PRK06718 10 NK-RVVIVGGG---KVAGRRAITLLKYGAHITVISPEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAAT--ND-PR 82 (202)
T ss_pred CC-EEEEECCC---HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECC--CC-HH
T ss_conf 98-69998898---99999999998689969998699998999999769944761678866751670445527--98-99
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCC-----CCCCCCHHHHHHH
Q ss_conf 876666632045627998447889545214533768861554-----3247521789999
Q gi|255764505|r 127 LKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPES-----CPHGLAPTTSAIM 181 (341)
Q Consensus 127 ~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea-----~~~~~aPt~Stt~ 181 (341)
+.+.+..+.+.+..+ +..+.| .+||+.+..-+.+.. ...|-+|..+...
T Consensus 83 ~N~~i~~~~~~~~lv----NvvD~p--~~~dFi~Paiv~rg~l~IaIST~G~SP~lAr~i 136 (202)
T PRK06718 83 VNEAVAEALPENALF----NVIGDA--ESGNVVFPSALHRGKLTISVSTDGASPKLAKKI 136 (202)
T ss_pred HHHHHHHHHHHCCCE----EECCCC--CCCEEEEEEEEEECCEEEEEECCCCCHHHHHHH
T ss_conf 999999986544875----755786--548278742785299899998899783999999
No 334
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=53.87 E-value=17 Score=16.74 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCH----------------HHHCCCE---------
Q ss_conf 999999982799599993381379999999998750886110123302----------------3202301---------
Q gi|255764505|r 54 HCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEA----------------SHGDLGM--------- 108 (341)
Q Consensus 54 ~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea----------------~Hgdlg~--------- 108 (341)
.+.-+.+...+ ||++.| +|.|+-.+|+.|.+.|..-..+++.+. .|-+-|+
T Consensus 135 ~~l~~~l~~~k-~vvVIG---gG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~~~~~~~v~ 210 (400)
T PRK09754 135 ARLREVLQPER-SVVIVG---AGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIE 210 (400)
T ss_pred HHHHHHHCCCC-EEEEEC---CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 99998761587-399988---55899999999997599489995346341002698999999999997898999587589
Q ss_pred -EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEE
Q ss_conf -2104707898368780788766666320456279984478895452145337
Q gi|255764505|r 109 -ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVL 160 (341)
Q Consensus 109 -i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l 160 (341)
+..++.+-..-.+|++- .-..-++++--.|+..|++.+.+..
T Consensus 211 ~~~~g~~~~v~l~~G~~l----------~aD~VivaiGv~Pnt~la~~agL~~ 253 (400)
T PRK09754 211 HVVDGEKVELTLQSGETL----------QADVVIYGIGISANDQLAREANLDT 253 (400)
T ss_pred EEECCCEEEEEECCCCEE----------ECCEEEECCCCCCCHHHHHHCCCCC
T ss_conf 997897799998689999----------8589998976753758998779975
No 335
>pfam11017 DUF2855 Protein of unknown function (DUF2855). This family of proteins has no known function.
Probab=53.80 E-value=17 Score=16.74 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=32.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHCC---CCEEEEEEE
Q ss_conf 70789836878078876666632--045627998447889545214---533768861
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYAR--RFSIPLIAITSENKSVVACHA---DIVLTLPKE 165 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k--~~~~~iI~iT~~~~S~la~~a---d~~l~~~~~ 165 (341)
+.+|..|-|.+|.- .++..++ +.+.++|++||.+|-...+.- |-++.+...
T Consensus 137 ~qvii~SASSKTAi--glA~~L~~~~~~~~vVGLTS~~N~~Fve~lG~YD~VltYd~i 192 (314)
T pfam11017 137 AQVVLTSASSKTAI--GLAFLLKQRSGGLKVVGLTSARNVAFVEGLGCYDEVLTYDDI 192 (314)
T ss_pred CEEEEEECCCCHHH--HHHHHHHHCCCCCCEEEECCCCCHHHHHCCCCCEEEEECCCH
T ss_conf 22899403430388--899999851899857996288544266546874167632235
No 336
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=53.77 E-value=16 Score=16.93 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 4707898368780788766666320456279984478
Q gi|255764505|r 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSEN 148 (341)
Q Consensus 112 ~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~ 148 (341)
-+.+|..|+||+|..++.=. +.++|||++|.++
T Consensus 407 ~kaivv~T~~G~ta~~~S~~----rp~~piia~T~~~ 439 (513)
T TIGR01064 407 AKAIVVPTESGRTARLLSKY----RPSAPIIAVTPNE 439 (513)
T ss_pred CCEEEEECCCCCHHHHHHHH----CCCCCEEEEECCH
T ss_conf 52689814898478889752----7798389970877
No 337
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=53.12 E-value=13 Score=17.44 Aligned_cols=19 Identities=37% Similarity=0.384 Sum_probs=8.6
Q ss_pred EECCCEEEEE--ECCCCCHHH
Q ss_conf 2104707898--368780788
Q gi|255764505|r 109 ITRDDLIIVL--SWSGSSDEL 127 (341)
Q Consensus 109 i~~~Dv~i~i--S~SG~t~e~ 127 (341)
+.++.++..+ |-||+|.=+
T Consensus 18 i~~Ge~~~iiG~nGsGKSTLl 38 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLV 38 (176)
T ss_pred ECCCCEEEEECCCCCCHHHHH
T ss_conf 889989999999999899999
No 338
>PRK08611 pyruvate oxidase; Provisional
Probab=52.33 E-value=18 Score=16.58 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC--------CHHHHCCCE---------EEC
Q ss_conf 136699999999827995999933813799999999987508861101233--------023202301---------210
Q gi|255764505|r 49 LSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA--------EASHGDLGM---------ITR 111 (341)
Q Consensus 49 ~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~--------ea~Hgdlg~---------i~~ 111 (341)
....+++++++|.+++--+++.|.|-++ -...+..-...+|.|.+.-..+ ..+.|-+|. +.+
T Consensus 189 ~~~~i~~a~~~L~~AkrPvIi~G~G~~~-a~~~l~~Lae~l~~PV~tt~~gkg~~pedhpl~~G~~G~~g~~~a~~~l~~ 267 (576)
T PRK08611 189 KKKDIKKAAKLINKAKKPVILAGVGAKH-AKDELLEFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQE 267 (576)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCHHHHH-HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 9999999999998566987763756889-999999999997989895145578668767300365434575899998623
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 4707898368780788766666320456279984478
Q gi|255764505|r 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSEN 148 (341)
Q Consensus 112 ~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~ 148 (341)
-|++|++=.+-... .+. ..+.++|-|..++
T Consensus 268 aDlvl~lGt~~~~~------~~~-p~~~~~I~vd~dp 297 (576)
T PRK08611 268 ADLLIMVGTNYPYV------DYL-PKKAKAIQIDTNP 297 (576)
T ss_pred CCEEEEECCCCCCC------CCC-CCCCCEEEEECCH
T ss_conf 78799979987752------347-8898279982898
No 339
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=52.01 E-value=15 Score=17.00 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=22.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCE
Q ss_conf 5999933813799999999987508861101233023202301
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGM 108 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~ 108 (341)
=+--||.|||..++.=+..-....+.+...++| ||+.+.
T Consensus 28 Ilg~TGsGKS~tv~vLl~~l~~~~~~~vlVfDp----HgEY~~ 66 (218)
T pfam01935 28 ILGSTGSGKSNTVAVLLEELLEKKGATVLIFDP----HGEYGW 66 (218)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEECC----CCCCHH
T ss_conf 872699976999999999998547997899828----863632
No 340
>KOG4576 consensus
Probab=51.91 E-value=4.9 Score=20.60 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 387888753110011112433333210475430551002388889874104662000000
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVD 258 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd 258 (341)
|...||.-+|||| -|.|+-+..-.-|-.. +.....-.++++.+...++|-+-+.|
T Consensus 106 yDVTdFv~~HPGG--dKillAAG~a~dPFWa---lY~qHnt~eVlElLegyrIG~L~~~d 160 (167)
T KOG4576 106 YDVTDFVDLHPGG--DKILLAAGGALDPFWA---LYAQHNTSEVLELLEGYRIGELNPED 160 (167)
T ss_pred EEHHHHHHHCCCC--CEEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 2478898708995--6143206887671899---99886279999999634436677100
No 341
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=51.81 E-value=18 Score=16.52 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC-----C--EEECCCEEEEEECCCCCHHH--HHHHHHH
Q ss_conf 9959999338137999999999875088611012330232023-----0--12104707898368780788--7666663
Q gi|255764505|r 64 KGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDL-----G--MITRDDLIIVLSWSGSSDEL--KAILYYA 134 (341)
Q Consensus 64 ~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdl-----g--~i~~~Dv~i~iS~SG~t~e~--~~~~~~~ 134 (341)
+.-++++|+|.|+.+..++ . .+.-..+||-. | +..|+=.||+.|--|-+--+ -.++..+
T Consensus 39 ~~~vivSGIGCs~r~p~y~----~--------~~~~h~lHGRalp~AtGiK~anPdL~Viv~~GDGD~~~IGgnH~iHA~ 106 (284)
T PRK11869 39 RQVAIVSGIGQAGKMPHYI----N--------VNGFHTLHGRAIPAATAVKATNPNLTVIAEGGDGDMYAEGGNHLIHAI 106 (284)
T ss_pred CCEEEEECCCCCCCCCCCE----E--------ECCEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 3189981756762042408----7--------064311667707889999876899769998126615430288899999
Q ss_pred HCC--------CCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 204--------562799844788954521453376886155432475
Q gi|255764505|r 135 RRF--------SIPLIAITSENKSVVACHADIVLTLPKEPESCPHGL 173 (341)
Q Consensus 135 k~~--------~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~ 173 (341)
|++ +..+-++|+..-||-....-..-..|...-..|+|.
T Consensus 107 RRN~dit~Iv~nN~iYGlTkGQ~SPTt~~G~~T~t~P~G~~e~p~np 153 (284)
T PRK11869 107 RRNPDITVLIHNNQIYGLTKGQASPTTLKGTKTPTQPWGVFEEPFNP 153 (284)
T ss_pred HCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 74898089998881001157988989999880557889988899799
No 342
>TIGR01063 gyrA DNA gyrase, A subunit; InterPro: IPR005743 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the A subunit (gyrA) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrA has two functional domains: an N-terminal that forms the covalent DNA-protein bridge that is responsible for the breaking- and rejoining function, and a C-terminal that can bind DNA non-specifically . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=50.65 E-value=5.8 Score=20.04 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=26.4
Q ss_pred CEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 0121047078983687807887666663204562
Q gi|255764505|r 107 GMITRDDLIIVLSWSGSSDELKAILYYARRFSIP 140 (341)
Q Consensus 107 g~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~ 140 (341)
-.|+.+++||.+|+.|.-+-+=--.--.+++|-+
T Consensus 518 DLI~~E~vVvt~s~~GYvKR~p~~~Y~~Q~RGGk 551 (864)
T TIGR01063 518 DLIARENVVVTLSHKGYVKRVPVSAYRSQKRGGK 551 (864)
T ss_pred HHHCCCCEEEEEECCCEEEECCHHHHHCCCCCCC
T ss_conf 4414787899971686478603013325766664
No 343
>pfam01041 DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase family. The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC, and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin.
Probab=50.30 E-value=19 Score=16.36 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=65.0
Q ss_pred HCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH-----------------H---HHHCCCCCCCCCCC-CHHHHC
Q ss_conf 01136699999999827995999933813799999999-----------------9---87508861101233-023202
Q gi|255764505|r 47 GELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLAS-----------------T---LASTGTPSFFVHAA-EASHGD 105 (341)
Q Consensus 47 ~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~-----------------t---l~s~G~~a~~~~~~-ea~Hgd 105 (341)
......|++......+++ .++.+.-|+|++-.--.+. | ....|..-.|++-- +-..=|
T Consensus 24 G~~v~~fE~~~~~~~g~k-~~v~~~sgT~Al~lal~a~~~~~gdeVi~p~~t~~at~~ai~~~G~~pvf~Dvd~~t~~id 102 (363)
T pfam01041 24 GPEVREFEKEFAAYLGVK-HAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAVLYLGAKPVFVDIDPDTYNID 102 (363)
T ss_pred CHHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 989999999999997849-5999758899999999985988929999799775988999998699799850645656858
Q ss_pred CC----EEECC-CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC------CCCCHHHHCCCCEE
Q ss_conf 30----12104-7078983687807887666663204562799844------78895452145337
Q gi|255764505|r 106 LG----MITRD-DLIIVLSWSGSSDELKAILYYARRFSIPLIAITS------ENKSVVACHADIVL 160 (341)
Q Consensus 106 lg----~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~------~~~S~la~~ad~~l 160 (341)
+- .++++ ..+|.+..-|...++-++.+.++++|+++|-=.+ ..+-++...+|+..
T Consensus 103 ~~~l~~~i~~~tkaIi~vh~~G~~~d~~~i~~~~~~~~i~lIEDaA~a~Ga~~~gk~~G~~gd~~~ 168 (363)
T pfam01041 103 PAAIEAAITPRTKAIMPVHLYGQPADMDAIRAIAAEHGLPVIEDAAHAHGATYKGKRVGTFGDAAT 168 (363)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCEECCCCCCCCE
T ss_conf 999998607587099987898986899999999998499999731320267658654356445210
No 344
>pfam10432 bact-PGI_C Bacterial phospho-glucose isomerase C-terminal region. This is the C-terminal half of a bacterial phospho-glucose isomerase EC:5.3.1.9 protein which is similar to eukaryote homologues to the extent that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This domain contributes a good proportion of the active catalytic site residues. This PGI uses the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate. It is associated with family SIS, pfam01380.
Probab=49.90 E-value=19 Score=16.31 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCE-EEEECCCHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHCCCEE-ECC----CEEEEEECCCCCHHHHHHHHHH---
Q ss_conf 959-9993381379999999998750-88611012330232023012-104----7078983687807887666663---
Q gi|255764505|r 65 GRV-VITGIGKSGHIGSKLASTLAST-GTPSFFVHAAEASHGDLGMI-TRD----DLIIVLSWSGSSDELKAILYYA--- 134 (341)
Q Consensus 65 grv-~~~GvG~S~~ia~k~a~tl~s~-G~~a~~~~~~ea~Hgdlg~i-~~~----Dv~i~iS~SG~t~e~~~~~~~~--- 134 (341)
|++ +++|-+.-+.+|..+...|+-- ..||++-.--|+.|.++-.. .+. -.++++....+-.++..-....
T Consensus 17 ~~iPviy~~~~~~~~A~R~k~qlnENaK~~a~~~~lPE~nHNeivg~~~~~~~~~~~~v~l~d~~d~~~~~~R~~~~~~i 96 (154)
T pfam10432 17 GYIPVIYGSPLYRAAAYRFKNQLNENAKYPAFSGELPEANHNEIVGLEGPFSLLRLRVVLLRDREDDPRTKRRADITEEI 96 (154)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 88888996885379999999999997388756578985221001020575556772799981698568899999999999
Q ss_pred -HCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf -204562799844788954521453376886155432475217899999999999999999850338788
Q gi|255764505|r 135 -RRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND 203 (341)
Q Consensus 135 -k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d 203 (341)
+.++++++-+.+..+|+|+++ .....+||-+++-|...+|..+.+
T Consensus 97 ~~~~~~~v~~i~~~g~s~l~rl------------------------~~li~lgD~~S~yLA~~~gvDP~~ 142 (154)
T pfam10432 97 AEDRGVNVIEIEAEGGSPLERL------------------------ASLIYLGDFASVYLALIRGVDPEP 142 (154)
T ss_pred HHHCCCCEEEEECCCCCHHHHH------------------------HHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9866986699946999899999------------------------999999999999999981979641
No 345
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=49.52 E-value=19 Score=16.27 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=51.0
Q ss_pred HCCCCEEEEECCCHHHH-HH----------------HHHHHHHHCCCCCCCCCCCCH--HHHCCCEEECCCEEEEEECCC
Q ss_conf 27995999933813799-99----------------999998750886110123302--320230121047078983687
Q gi|255764505|r 62 AIKGRVVITGIGKSGHI-GS----------------KLASTLASTGTPSFFVHAAEA--SHGDLGMITRDDLIIVLSWSG 122 (341)
Q Consensus 62 ~~~grv~~~GvG~S~~i-a~----------------k~a~tl~s~G~~a~~~~~~ea--~Hgdlg~i~~~Dv~i~iS~SG 122 (341)
+.+++|+++|.|..|.+ ++ +....+.+.|.|.+|=++++. ++ ..|.=+.+=+++++..--
T Consensus 398 ~~~~~VII~G~GR~Gq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~-~AGi~~A~~vViai~d~~ 476 (602)
T PRK03659 398 DDKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLR-AAGAEKAEAIVITCNEPE 476 (602)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHH-HCCCCCCCEEEEEECCHH
T ss_conf 6789989978875689999999978999899978679999999789908975899999998-679040588999829899
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCC
Q ss_conf 807887666663204562799844788954521453
Q gi|255764505|r 123 SSDELKAILYYARRFSIPLIAITSENKSVVACHADI 158 (341)
Q Consensus 123 ~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~ 158 (341)
.+.++++.++.. ..+.++++=+.+. .-..++-+.
T Consensus 477 ~~~~iv~~~r~~-~P~l~I~aRar~~-~~~~~L~~~ 510 (602)
T PRK03659 477 DTMKLVELCQQH-FPHLHILARARGR-VEAHELLQA 510 (602)
T ss_pred HHHHHHHHHHHH-CCCCEEEEEECCH-HHHHHHHHC
T ss_conf 999999999987-8699699986978-999999978
No 346
>LOAD_sir2 consensus
Probab=49.38 E-value=19 Score=16.26 Aligned_cols=11 Identities=55% Similarity=0.652 Sum_probs=7.4
Q ss_pred CEEEEECCCHH
Q ss_conf 59999338137
Q gi|255764505|r 66 RVVITGIGKSG 76 (341)
Q Consensus 66 rv~~~GvG~S~ 76 (341)
=|+|+|.|=|.
T Consensus 4 ivvlTGAGiS~ 14 (217)
T LOAD_sir2 4 VVVLTGAGIST 14 (217)
T ss_pred EEEEECCCHHH
T ss_conf 99994960003
No 347
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.04 E-value=20 Score=16.22 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=32.4
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 21047078983687807887666663204562799844788
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK 149 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~ 149 (341)
+.+-|++|.-.+|..+.+.++.++..-..+..++.+-+--.
T Consensus 66 ~~~~D~iiv~vKs~~~~~a~~~l~~~l~~~t~iv~lqNG~g 106 (307)
T PRK06522 66 LGPQDLVILAVKAYQLPAALPDLAPLLGPETVVLFLQNGVG 106 (307)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 48988899980666899999999864599948999616867
No 348
>TIGR00878 purM phosphoribosylformylglycinamidine cyclo-ligase; InterPro: IPR004733 The purine biosynthetic pathway in procaryotes enlists eleven enzymes, six of which use ATP. Enzymes 5 and 6 of this pathway, formylglycinamide ribonucleotide (FGAR) amidotransferase (PurL) and aminoimidazole ribonucleotide (AIR) synthetase (PurM) utilise ATP to activate the oxygen of an amide within their substrate toward nucleophilic attack by a nitrogen. AIR synthetase uses the product of PurL, formylglycinamidine ribonucleotide (FGAM) and ATP to make AIR, ADP and P(i).; GO: 0004641 phosphoribosylformylglycinamidine cyclo-ligase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=48.58 E-value=9.6 Score=18.49 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=18.4
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 2104707898368780788766666
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYY 133 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~ 133 (341)
++++||+|+++-||=-..=..+++-
T Consensus 174 v~~GDv~igl~SSG~HSNG~SLvRK 198 (338)
T TIGR00878 174 VKPGDVLIGLGSSGIHSNGLSLVRK 198 (338)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 0678789983178731122677656
No 349
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.56 E-value=20 Score=16.17 Aligned_cols=26 Identities=19% Similarity=-0.083 Sum_probs=13.1
Q ss_pred EEEEEHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 05510023888898741046620000
Q gi|255764505|r 231 PLVKIGCPLIDAITILSEKRFGCVAV 256 (341)
Q Consensus 231 p~V~~~~si~eal~~m~~~~~g~v~V 256 (341)
-.|.-.--=+.+.+.+.+.+...+.+
T Consensus 421 ii~G~Gr~G~~va~~L~~~~~~~vvi 446 (558)
T PRK10669 421 LLVGYGRVGSLLGEKLLASGIPLVVI 446 (558)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99898866999999999879988999
No 350
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=48.55 E-value=11 Score=17.99 Aligned_cols=201 Identities=18% Similarity=0.152 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCC----CCH
Q ss_conf 3669999999982799599993381379999999998750886110123302320230121047078983687----807
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSG----SSD 125 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG----~t~ 125 (341)
++++..|...|.+- .=+-.|||.-|+=- .|..+ .-+..+ ..+=..+-+|- .-.
T Consensus 204 PFS~~da~~~I~Ky--~~F~a~mGAEAI~~-----LL~~i--------DL~~e~--------~~l~~~l~~~~kd~~~~~ 260 (1552)
T TIGR02386 204 PFSVDDATSYIEKY--DGFRAGMGAEAIKE-----LLEKI--------DLDKEI--------EELKEELRESKKDSKSQQ 260 (1552)
T ss_pred CEEHHHHHHHHHHC--CEEEEEECHHHHHH-----HHHCC--------CHHHHH--------HHHHHHHHHCCCCCCCHH
T ss_conf 83189999886533--85578732489998-----75137--------868999--------999999862143456766
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEE-EEEEE-CCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88766666320456279984478895452145337-68861-5543247521789----999999999999999985033
Q gi|255764505|r 126 ELKAILYYARRFSIPLIAITSENKSVVACHADIVL-TLPKE-PESCPHGLAPTTS----AIMQLAIGDALAIALLESRNF 199 (341)
Q Consensus 126 e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l-~~~~~-~Ea~~~~~aPt~S----tt~~l~~~Dalav~l~~~~~~ 199 (341)
+..++++.++=.....- ++|... ..+| .+||- +|-.|. .+ +.++-=+-| | -+|=+
T Consensus 261 ~~kkllKRLe~~e~F~~--Sgn~Pe------WMvl~~~PVIPPelRPm-----VQLDGGRFATSDLND-L-----YRRVI 321 (1552)
T TIGR02386 261 KRKKLLKRLEILEAFKN--SGNRPE------WMVLDVIPVIPPELRPM-----VQLDGGRFATSDLND-L-----YRRVI 321 (1552)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCCC------CEECCCCCCCCCCCCCC-----CCCCCCCHHHHHHHC-C-----CCEEE
T ss_conf 88888898788999971--378875------30353157588422677-----647775101223201-0-----23023
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEC------CCHH
Q ss_conf 8788875311001111243333321047543055100238888987410466200000043232324123------4035
Q gi|255764505|r 200 SENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITE------GDIF 273 (341)
Q Consensus 200 t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITd------gDlr 273 (341)
++++ ||.+..++=.| +|-+=++.==|+||+..+-+++..-=||...++|.+==+|| |=.|
T Consensus 322 NRNN------------RLKrlL~l~AP--eIIV~NEKRMLQEAVDALfDNgRR~kPV~G~~nRpLKSLSdmLKGKQGRFR 387 (1552)
T TIGR02386 322 NRNN------------RLKRLLELKAP--EIIVRNEKRMLQEAVDALFDNGRRGKPVVGKNNRPLKSLSDMLKGKQGRFR 387 (1552)
T ss_pred ECCH------------HHHHHHHCCCC--EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHH
T ss_conf 0103------------78898745888--688715533567888887447888863107889775432444126677300
Q ss_pred HHHHCCCCCCCHHHHCCCCCEEECCCC-------CHHHHHHHHHH
Q ss_conf 676178233709883488978977998-------78999999996
Q gi|255764505|r 274 RNFHKDLNTLSVEDVMIKNPKVILEDT-------LLTVAMQLLRQ 311 (341)
Q Consensus 274 R~l~~~~~~~~v~~iMt~~p~~I~~d~-------~i~eAl~lM~~ 311 (341)
.. +....| |+--|+.+.|-|+- |...||+||.=
T Consensus 388 QN----LLGKRV-DYSGRSVIVVGPeLKm~QcGLPk~MALeLFKP 427 (1552)
T TIGR02386 388 QN----LLGKRV-DYSGRSVIVVGPELKMYQCGLPKKMALELFKP 427 (1552)
T ss_pred HH----HCCCEE-EECCCEEEEECCCCCCCCCCCCHHHHHHHCCC
T ss_conf 32----068605-41552789988977411368827988751673
No 351
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=48.47 E-value=20 Score=16.16 Aligned_cols=124 Identities=13% Similarity=0.010 Sum_probs=63.9
Q ss_pred EECCCEEEEEE-CCCCC--HHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 21047078983-68780--7887666663204562799844788954521453376886155432475217899999999
Q gi|255764505|r 109 ITRDDLIIVLS-WSGSS--DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 109 i~~~Dv~i~iS-~SG~t--~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~ 185 (341)
+..-|+++.+. +.-++ .-....+..++++|+++|.|-- ..|.++..||..|.+.-. +-....+++
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~GaklividP-r~t~ta~~Ad~~l~irPG-----------tD~al~~a~ 221 (454)
T cd02755 154 FENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDP-RFSELASKADEWIPIKPG-----------TDLAFVLAL 221 (454)
T ss_pred HHHCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHCCCCCC-----------CHHHHHHHH
T ss_conf 98598999994465323563899999999975997999717-776488965434077999-----------659999888
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE--EEHHHHHHHHHHHHCCCCC
Q ss_conf 999999999850338788875311001111243333321047543055--1002388889874104662
Q gi|255764505|r 186 GDALAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLV--KIGCPLIDAITILSEKRFG 252 (341)
Q Consensus 186 ~Dalav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V--~~~~si~eal~~m~~~~~g 252 (341)
... + -..++-.++|...|-.|-=.-+ -.+++. +.+...-+ -+...++++.+.+.+.+-.
T Consensus 222 ~~~----i-i~e~l~D~~fv~~~t~g~~~~~-~~~~~~--tpe~aa~itGv~~~~I~~lA~~~a~~~~~ 282 (454)
T cd02755 222 IHV----L-ISENLYDAAFVEKYTNGFELLK-AHVKPY--TPEWAAQITDIPADTIRRIAREFAAAAPH 282 (454)
T ss_pred HHH----H-HHCCCCCHHHHHHHCCCHHHHH-HHHHHC--CHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 788----9-8768867688998556299999-997634--98999876299799999999999705996
No 352
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=48.34 E-value=20 Score=16.15 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=48.0
Q ss_pred CCCCEEEECCCCCEEEEEEECCCHHH------HHHCCC--CCCC-HHHHCCC-CCEEECCCCCHHHHHHHHHHCC--CCE
Q ss_conf 46620000004323232412340356------761782--3370-9883488-9789779987899999999679--958
Q gi|255764505|r 249 KRFGCVAVVDEGQKLKGIITEGDIFR------NFHKDL--NTLS-VEDVMIK-NPKVILEDTLLTVAMQLLRQHN--ISV 316 (341)
Q Consensus 249 ~~~g~v~Vvd~~~~liGIITdgDlrR------~l~~~~--~~~~-v~~iMt~-~p~~I~~d~~i~eAl~lM~~~k--I~~ 316 (341)
.++|. ++.|+++++.+++-..|... ...-++ .+.+ +.+...+ .|-....+--+.|++++|.+.+ +..
T Consensus 133 ~~YG~-v~~d~~g~v~~ivEkk~~~~~~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~~~i~~g~kv~~ 211 (229)
T cd02540 133 TGYGR-IIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAA 211 (229)
T ss_pred CCCCE-EEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCEEE
T ss_conf 67867-99889997899998878765434543222279998599999999847987668878899999999988991899
Q ss_pred EEEEECCCEEEEEEEHHHH
Q ss_conf 9998069848999858889
Q gi|255764505|r 317 LMVVDDCQKAIGIVHFLDL 335 (341)
Q Consensus 317 LpVVD~~~~lvGiIt~~DL 335 (341)
+++ +++.+.+|+=|..||
T Consensus 212 ~~~-~~~~~~~Gin~~~dl 229 (229)
T cd02540 212 VLA-DDEEEVLGVNDRVQL 229 (229)
T ss_pred EEE-CCHHHEECCCCHHHC
T ss_conf 992-887661378897879
No 353
>PRK07855 lipid-transfer protein; Provisional
Probab=47.75 E-value=20 Score=16.09 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCHHHHHH----------HHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999850338788875----------31100111124333332104
Q gi|255764505|r 189 LAIALLESRNFSENDFYV----------LHPGGKLGTLFVCASDVMHS 226 (341)
Q Consensus 189 lav~l~~~~~~t~~df~~----------~HPgG~lg~~Ll~V~DiM~~ 226 (341)
.+-.-|++.|.|.|||++ .+|-=.+.++-+++.|+|..
T Consensus 153 ~a~rym~~yG~t~E~lA~Vavknr~nA~~NP~A~~~~~~iT~edvl~S 200 (386)
T PRK07855 153 IARRYMHEYGATSEDFGRVAVADRKHAATNPKAFFYGKPITLEDHQNS 200 (386)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHCC
T ss_conf 999999997959999999999999987419598873789889998516
No 354
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent; InterPro: IPR004434 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and belog to this group. The NADP-dependent IDH of Thermus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus. ; GO: 0004449 isocitrate dehydrogenase (NAD+) activity, 0006099 tricarboxylic acid cycle, 0005739 mitochondrion.
Probab=47.50 E-value=13 Score=17.63 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHHHHHHH-HHHHHHCCCCCCEE------E-----EEH--HHHHHHHHHH-HCCCCCE
Q ss_conf 1001111243-33332104754305------5-----100--2388889874-1046620
Q gi|255764505|r 209 PGGKLGTLFV-CASDVMHSGDSIPL------V-----KIG--CPLIDAITIL-SEKRFGC 253 (341)
Q Consensus 209 PgG~lg~~Ll-~V~DiM~~~~~ip~------V-----~~~--~si~eal~~m-~~~~~g~ 253 (341)
||+.||+-++ .|++||... .+|+ | +.+ +.+.+|++-| .+++++.
T Consensus 10 PGDGIGPE~~~~V~~If~~~-~~PI~fE~~dv~~~~~~~~~~~~~~~A~~SiG~rN~VaL 68 (348)
T TIGR00175 10 PGDGIGPEISGAVKEIFKAA-NVPIDFEEIDVSAIETDGKKSEIPDEAVESIGRRNKVAL 68 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 48884444688899999965-897358878435553587666774799997200287203
No 355
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=47.41 E-value=21 Score=16.05 Aligned_cols=70 Identities=9% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHH
Q ss_conf 85033878887531100111124-33333210475430551002388889874104662000000432323241234035
Q gi|255764505|r 195 ESRNFSENDFYVLHPGGKLGTLF-VCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIF 273 (341)
Q Consensus 195 ~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlr 273 (341)
+.+.|..+.+...-++.++...+ +.+.+.+.- ......+.+.++.+.+-+++...+ ++..+-+|-|.-+
T Consensus 107 ~~~~~~~~~l~~~~~~~~i~e~l~~~~~~~~~~------~~~~~~~~~~l~~L~~~gl~~~~l----~~~~~~LSGGqkQ 176 (261)
T cd03271 107 KGKRYNRETLEVRYKGKSIADVLDMTVEEALEF------FENIPKIARKLQTLCDVGLGYIKL----GQPATTLSGGEAQ 176 (261)
T ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCHHCC----CCCCCCCCHHHHH
T ss_conf 121004677876654887999987579999999------985677888765677627650003----6645566889999
Q ss_pred H
Q ss_conf 6
Q gi|255764505|r 274 R 274 (341)
Q Consensus 274 R 274 (341)
|
T Consensus 177 R 177 (261)
T cd03271 177 R 177 (261)
T ss_pred H
T ss_conf 9
No 356
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=47.34 E-value=21 Score=16.04 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCC--------CC-----------------CCCCCCC-H
Q ss_conf 11366999999998279959999338137999999999875088--------61-----------------1012330-2
Q gi|255764505|r 48 ELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGT--------PS-----------------FFVHAAE-A 101 (341)
Q Consensus 48 ~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~--------~a-----------------~~~~~~e-a 101 (341)
.....|++......+++ ..+.+.-|++++..- |..+|+ |+ +|++--. -
T Consensus 33 ~~v~~FE~~~a~~~g~k-~av~v~sgT~AL~la-----l~al~i~~gdeVi~p~~tf~at~~ai~~~Ga~pvf~Did~~t 106 (379)
T PRK11658 33 PKNQELEQAFCQLTGNQ-HAIAVSSATAGMHIT-----LMALGIGPGDEVITPSQTWVSTLNMIVLLGATPVMVDVDRDT 106 (379)
T ss_pred HHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHH-----HHHCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 77999999999997869-499976889999999-----998698883999989955699999999819989974574565
Q ss_pred HHHCC----CEEECC-CEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 32023----012104-7078983687807887666663204562799
Q gi|255764505|r 102 SHGDL----GMITRD-DLIIVLSWSGSSDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 102 ~Hgdl----g~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~ 143 (341)
..=|. -.|+++ ..+|.+-.-|...++-++.+.++++|+++|-
T Consensus 107 ~~id~~~~e~~it~~tkaIi~Vh~~G~~~d~~~i~~i~~~~~i~vIE 153 (379)
T PRK11658 107 LMVTPEAIEAAITPRTKAIIPVHYAGAPADLDAIRAIGERYGIPVIE 153 (379)
T ss_pred CCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 35488999865482654999856889866377999999975981897
No 357
>PRK07261 topology modulation protein; Provisional
Probab=47.04 E-value=20 Score=16.16 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=50.8
Q ss_pred CEEEEECCCHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 599993381379--999999998750886110123302320230121047078983687807887666663204562799
Q gi|255764505|r 66 RVVITGIGKSGH--IGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 66 rv~~~GvG~S~~--ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~ 143 (341)
||.++|.++||- .|++++.. +|+|.+.++. +| -.||-. .=.-.|..+.++.+-....= -
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~---~~ip~~~LD~---l~-----w~p~w~------~~~~~e~~~~~~~~~~~~~W--I 62 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQH---YNCPVLHLDQ---LH-----FSSNWQ------ERDDDDMIADISNFLLKQDW--I 62 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---HCCCEEEECC---EE-----ECCCCE------ECCHHHHHHHHHHHHHCCCE--E
T ss_conf 8999889998689999999998---7979797022---78-----889998------88899999999999848987--9
Q ss_pred EECCCCCHH----HHCCCCEEEEEEECCCCCCC
Q ss_conf 844788954----52145337688615543247
Q gi|255764505|r 144 ITSENKSVV----ACHADIVLTLPKEPESCPHG 172 (341)
Q Consensus 144 iT~~~~S~l----a~~ad~~l~~~~~~Ea~~~~ 172 (341)
|-+|-.+++ -..||.++.+..+...|-.+
T Consensus 63 iDGny~~~~~~~rl~~aD~iI~Ld~p~~~~l~r 95 (171)
T PRK07261 63 IEGNYSNCLYEERMAEADQIIFLNFSRFNCLYR 95 (171)
T ss_pred EECCCCCHHHHHHHHHCCEEEEECCCHHHHHHH
T ss_conf 947851247776797799999985849999999
No 358
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=46.91 E-value=21 Score=16.06 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=3.5
Q ss_pred CEEEEEECCC
Q ss_conf 7078983687
Q gi|255764505|r 113 DLIIVLSWSG 122 (341)
Q Consensus 113 Dv~i~iS~SG 122 (341)
-++|.++++|
T Consensus 66 k~VViV~~~g 75 (105)
T cd01525 66 KIIVIVSHSH 75 (105)
T ss_pred CEEEEECCCC
T ss_conf 8299988998
No 359
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=46.64 E-value=21 Score=15.97 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHC-------CCEEECCCEEEEEECCCCCHHH--HHHHHHHH
Q ss_conf 95999933813799999999987508861101233023202-------3012104707898368780788--76666632
Q gi|255764505|r 65 GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGD-------LGMITRDDLIIVLSWSGSSDEL--KAILYYAR 135 (341)
Q Consensus 65 grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgd-------lg~i~~~Dv~i~iS~SG~t~e~--~~~~~~~k 135 (341)
.-|++.|+|.|+.+.-++ .. +-+ ...||- +-+-.|+=.|++++--|-.--+ -.++..+|
T Consensus 44 ~~v~vsGIGCs~r~~~y~----~~-----~~~---ht~HGRa~~~AtGiK~anPdl~Viv~~GDGD~~~IGgnH~iHA~r 111 (280)
T PRK11867 44 NVAVVSGIGCSSRLPYYI----NT-----YGF---HTIHGRALAFATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALR 111 (280)
T ss_pred CEEEEECCCCCCCCHHHE----EE-----CCC---CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHCHHHHHHHHHH
T ss_conf 189996315773224143----53-----671---324576078999998768997699992266032023888999998
Q ss_pred CC--------CCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 04--------562799844788954521453376886155432475
Q gi|255764505|r 136 RF--------SIPLIAITSENKSVVACHADIVLTLPKEPESCPHGL 173 (341)
Q Consensus 136 ~~--------~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~ 173 (341)
++ +..+-++|+..-||-...-...-..|...--.|+|.
T Consensus 112 RN~dit~iv~nN~iYGlT~GQ~SpTt~~G~~t~ttP~G~~~~p~n~ 157 (280)
T PRK11867 112 RNIDITIILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIDPPFNP 157 (280)
T ss_pred HCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 0898189998882010257855889999887677889988799799
No 360
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=46.54 E-value=14 Score=17.21 Aligned_cols=18 Identities=50% Similarity=0.685 Sum_probs=8.5
Q ss_pred EEECCCHHHHHHHHHHHHH
Q ss_conf 9933813799999999987
Q gi|255764505|r 69 ITGIGKSGHIGSKLASTLA 87 (341)
Q Consensus 69 ~~GvG~S~~ia~k~a~tl~ 87 (341)
++|+||| .||.+++..|.
T Consensus 6 vaG~GKs-~~a~~l~~~lg 23 (175)
T TIGR01313 6 VAGSGKS-TIASALAHRLG 23 (175)
T ss_pred CCCCCHH-HHHHHHHHHHH
T ss_conf 2786288-99999999854
No 361
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=46.15 E-value=22 Score=15.92 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHH-HHH----------------HHHHHH---HCCCCCCCCCCC-CHHHHCC
Q ss_conf 1136699999999827995999933813799-999----------------999987---508861101233-0232023
Q gi|255764505|r 48 ELSFQFHCAVEKIKAIKGRVVITGIGKSGHI-GSK----------------LASTLA---STGTPSFFVHAA-EASHGDL 106 (341)
Q Consensus 48 ~~~~~~~~av~~i~~~~grv~~~GvG~S~~i-a~k----------------~a~tl~---s~G~~a~~~~~~-ea~Hgdl 106 (341)
...+.|++.......++ ..+.+.-|.+++. |-+ +.||.. ..|-.-.|++.- +-..=|.
T Consensus 31 ~~v~~fE~~~a~~~g~~-~av~v~sgT~AL~lal~~l~i~~gdeVivp~~tf~at~~ai~~~Ga~pvfvDid~~t~~id~ 109 (375)
T PRK11706 31 GFTRRCQQWLEQRFGCA-KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDE 109 (375)
T ss_pred HHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCH
T ss_conf 79999999999997849-39996788999999999869889399998996649999999983996999971687577678
Q ss_pred ----CEEECC-CEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf ----012104-7078983687807887666663204562799
Q gi|255764505|r 107 ----GMITRD-DLIIVLSWSGSSDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 107 ----g~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~ 143 (341)
-.|+++ -.+|.+-.-|...++-++.+.|+++|+++|-
T Consensus 110 ~~ie~~it~ktkaIi~Vh~~G~~~d~~~I~~iak~~~i~vIE 151 (375)
T PRK11706 110 TLIEAAITPKTRAIVPVHYAGVACEMDTIMALAKKHNLFVVE 151 (375)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 999987086754999967889866789999988537908983
No 362
>PRK04965 nitric oxide reductase; Provisional
Probab=46.04 E-value=22 Score=15.91 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 699999999827995999933813799999999987508861101233
Q gi|255764505|r 52 QFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAA 99 (341)
Q Consensus 52 ~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ 99 (341)
++.+.-+.+.+++ ||++.| .|.|+-.+|..|.+.|.....+++.
T Consensus 130 d~~~~~~~l~~~k-rvvVIG---gG~IG~E~A~~L~~~G~~Vtvve~~ 173 (378)
T PRK04965 130 EYRACETQLRDAQ-RVLVVG---GGLIGTELAMDLCRAGKAVTLVDNA 173 (378)
T ss_pred HHHHHHHHHHCCC-EEEEEC---CCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9999997751497-899989---8388999999999679889997666
No 363
>pfam03948 Ribosomal_L9_C Ribosomal protein L9, C-terminal domain.
Probab=45.79 E-value=22 Score=15.88 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHH
Q ss_conf 8889874104662000000432323241234035676178233709883
Q gi|255764505|r 240 IDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDV 288 (341)
Q Consensus 240 ~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~i 288 (341)
++....+....+-...=++++|+|.|-+|..|+...+.+.-.+..-+++
T Consensus 5 ~~l~~~l~~~~l~i~~~~~e~g~LfGSVt~~dI~~~l~~~g~~i~k~~I 53 (86)
T pfam03948 5 EALAEKLEGLTVTIKAKAGEDGKLFGSVTTKDIAEALKAQGIEIDKKKI 53 (86)
T ss_pred HHHHHHHCCCEEEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCHHHE
T ss_conf 9999986598899999968998456135889999999977994158887
No 364
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=45.63 E-value=22 Score=15.86 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=86.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHHC---CCCEEEEECC-CHHHHHHH-HHHHHHHCCCCC-CCCCCCCHHHHCCC--------
Q ss_conf 9972001136699999999827---9959999338-13799999-999987508861-10123302320230--------
Q gi|255764505|r 42 ESSLQGELSFQFHCAVEKIKAI---KGRVVITGIG-KSGHIGSK-LASTLASTGTPS-FFVHAAEASHGDLG-------- 107 (341)
Q Consensus 42 ~~~l~~~~~~~~~~av~~i~~~---~grv~~~GvG-~S~~ia~k-~a~tl~s~G~~a-~~~~~~ea~Hgdlg-------- 107 (341)
....+.....+.++||+.|.+| +-||.++|== --|.-+-- +...|...|... .|.-|.-..+| .|
T Consensus 43 ~~l~~p~~l~dm~~Av~ri~~Ai~~~ekI~I~GDYDvDGiTstaiL~~~l~~~g~~~v~y~IP~R~~eG-YGl~~~~i~~ 121 (574)
T PRK11070 43 KGLLPWQQLSGIEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLALRSLGCSNIDYLVPNRFEDG-YGLSPEVVDQ 121 (574)
T ss_pred HHCCCHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC-CCCCHHHHHH
T ss_conf 747992351399999999999998799499993478606799999999999869971699798987678-7979999999
Q ss_pred EEECC-CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHH--CCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 12104-707898368780788766666320456279984478895452--145337688615543247521789999999
Q gi|255764505|r 108 MITRD-DLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVAC--HADIVLTLPKEPESCPHGLAPTTSAIMQLA 184 (341)
Q Consensus 108 ~i~~~-Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~--~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~ 184 (341)
+..++ +++|.+-+ |-|. .+.+++|++.|+.+| ||-.-. +-.. .|+. +.=| ..+.|++..---+..-+..-
T Consensus 122 ~~~~g~~LiITvDc-Gi~a--~e~i~~a~~~GidvI-VtDHH~-~~~~lP~a~a-ivNP-~~~~~~yp~k~L~G~GVafk 194 (574)
T PRK11070 122 AHARGAQLIVTVDN-GISS--HAGVAHAKSLGIPVI-VTDHHL-PGDTLPAADA-IINP-NLRDCNFPSKSLAGVGVAFY 194 (574)
T ss_pred HHHCCCCEEEEECC-CHHH--HHHHHHHHHCCCCEE-EECCCC-CCCCCCCCCE-EECC-CCCCCCCCCCCCCHHHHHHH
T ss_conf 99659999999578-5302--999999997799999-978999-9765887516-6578-97898999866550249999
Q ss_pred HHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEHHH-HHHHHHHHHC
Q ss_conf 999999999985-----033878887531100111-124333332104754305510023-8888987410
Q gi|255764505|r 185 IGDALAIALLES-----RNFSENDFYVLHPGGKLG-TLFVCASDVMHSGDSIPLVKIGCP-LIDAITILSE 248 (341)
Q Consensus 185 ~~Dalav~l~~~-----~~~t~~df~~~HPgG~lg-~~Ll~V~DiM~~~~~ip~V~~~~s-i~eal~~m~~ 248 (341)
+..||.-.+-+. +++...+...+ +. ..|=+|.|+|. ...+|-. ++..++.|.+
T Consensus 195 l~~al~~~l~~~~~~~~~~~~~~~l~~~-----ldlvalgTvaD~vp------L~~eNR~lV~~GL~~l~~ 254 (574)
T PRK11070 195 LMLALRTFLRDQGWFDERGIAIPNLAEL-----LDLVALGTVADVVP------LDANNRILVWQGLSRIRA 254 (574)
T ss_pred HHHHHHHHHHHCCCHHHCCCCCHHHHHH-----HHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHH
T ss_conf 9999999987634244417880779999-----98986766540123------420589999999999975
No 365
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=45.30 E-value=7.2 Score=19.40 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC----CCCHH-----------HHCCCE-----
Q ss_conf 366999999998279-959999338137999999999875088611012----33023-----------202301-----
Q gi|255764505|r 50 SFQFHCAVEKIKAIK-GRVVITGIGKSGHIGSKLASTLASTGTPSFFVH----AAEAS-----------HGDLGM----- 108 (341)
Q Consensus 50 ~~~~~~av~~i~~~~-grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~----~~ea~-----------Hgdlg~----- 108 (341)
+..+-...+.|..++ |-+++.|-... ...+++-| |.++ |+-.+ -.|+..
T Consensus 15 GT~LR~GLe~Ilra~tGaLIVlG~~~~-------v~~i~~GG---F~ld~~fsp~~LyELaKMDGAIVls~d~~kIl~AN 84 (352)
T PRK13482 15 GTPLREGLENILRAKTGALIVLGDDEE-------VESIVDGG---FHIDVDFSPTRLYELAKMDGAIVLSSDGSKILRAN 84 (352)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCHH-------HHHHHCCC---EEECCCCCHHHHHHHHCCCCCEEECCCHHHHHHHH
T ss_conf 953899999998605883899827188-------99996499---53368668799999861776189677540687732
Q ss_pred --EECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCC
Q ss_conf --210470789836878078876666632045627998447889545214
Q gi|255764505|r 109 --ITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHA 156 (341)
Q Consensus 109 --i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~a 156 (341)
+.| |--|--|.||.-.-+ +-..||+.|.++|+|+... +.+.-+.
T Consensus 85 vqL~P-D~sIpT~ETGtRHRT--AeRvAkQTg~~VIaVSqrr-~vItlY~ 130 (352)
T PRK13482 85 VQLVP-DPSIPTSETGTRHRT--AERVAKQTGYPVIAVSQRR-NIITLYV 130 (352)
T ss_pred HEECC-CCCCCCCCCCCCHHH--HHHHHHHHCCEEEEEECCC-CEEEEEE
T ss_conf 10069-999988877620567--9999998699289996234-7289998
No 366
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=44.55 E-value=7.3 Score=19.32 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHCCCCCCCCC---CCCHHHHCCCE--E-ECCCEEEEEECCCC-CHHHHHHHHHHHCCCCCEEEEECCCCC---------
Q ss_conf 75088611012---33023202301--2-10470789836878-078876666632045627998447889---------
Q gi|255764505|r 87 ASTGTPSFFVH---AAEASHGDLGM--I-TRDDLIIVLSWSGS-SDELKAILYYARRFSIPLIAITSENKS--------- 150 (341)
Q Consensus 87 ~s~G~~a~~~~---~~ea~Hgdlg~--i-~~~Dv~i~iS~SG~-t~e~~~~~~~~k~~~~~iI~iT~~~~S--------- 150 (341)
-..|.+..|+- ...++-+++|. | .-+..+++.-||-. -+.-+..++..|.-|-+|-+|.-|.|-
T Consensus 86 y~~g~~hLFiyTKp~~~~lFk~~GF~~i~~~~~~ivlmENs~trl~~y~~~L~k~r~~gkkIgaIVMNANPFTLGH~YLV 165 (352)
T COG3053 86 YERGRTHLFIYTKPEYAALFKQCGFSEIASAENVIVLMENSATRLKDYLSSLKKLRHPGKKIGAIVMNANPFTLGHRYLV 165 (352)
T ss_pred HHCCCCEEEEEECHHHHHHHHHCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 97498269999466679988738966864257648996168455899999877730577706899970798652159999
Q ss_pred -HHHHCCCCEEEEEEECCCC
Q ss_conf -5452145337688615543
Q gi|255764505|r 151 -VVACHADIVLTLPKEPESC 169 (341)
Q Consensus 151 -~la~~ad~~l~~~~~~Ea~ 169 (341)
.-+..||+.-.--|.+++.
T Consensus 166 EqAaaqcDwlHLFvV~eD~S 185 (352)
T COG3053 166 EQAAAQCDWLHLFVVKEDSS 185 (352)
T ss_pred HHHHHHCCEEEEEEEECCCC
T ss_conf 99996589899999824545
No 367
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=44.15 E-value=13 Score=17.53 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 999999998279959999338137
Q gi|255764505|r 53 FHCAVEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 53 ~~~av~~i~~~~grv~~~GvG~S~ 76 (341)
.+++.++|.+++-=|+++|.|=|.
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa 25 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISA 25 (250)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 779999998559589996786212
No 368
>pfam05198 IF3_N Translation initiation factor IF-3, N-terminal domain.
Probab=43.83 E-value=23 Score=15.67 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=12.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHCCC
Q ss_conf 8766666320456279984478895452145
Q gi|255764505|r 127 LKAILYYARRFSIPLIAITSENKSVVACHAD 157 (341)
Q Consensus 127 ~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad 157 (341)
+-++++.|++.|.-++-|+.+.+-|+.+.-|
T Consensus 30 ~~eAl~~A~~~~LDLV~vs~~a~PPVcki~D 60 (76)
T pfam05198 30 RAEALRLAEEKGLDLVEISPNADPPVCKIMD 60 (76)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCEEEEEE
T ss_conf 9999999998499689989999998889962
No 369
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=43.38 E-value=22 Score=15.92 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCH----HHHCCC---CEE----EEEEECCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 780788766666320456279984478895----452145---337----6886155432475-2178999999999999
Q gi|255764505|r 122 GSSDELKAILYYARRFSIPLIAITSENKSV----VACHAD---IVL----TLPKEPESCPHGL-APTTSAIMQLAIGDAL 189 (341)
Q Consensus 122 G~t~e~~~~~~~~k~~~~~iI~iT~~~~S~----la~~ad---~~l----~~~~~~Ea~~~~~-aPt~Stt~~l~~~Dal 189 (341)
---+++.++++.+|.+|-+++.||+|---- +|+.+. ++. .-...=|+|-.++ =|=+- .-||++
T Consensus 105 kl~p~m~~~i~~~~~~Gfkt~~lTNN~~l~~GPGmaq~~~~~~~p~~~~~~FD~VvESc~~G~~KPD~r-iY~L~~---- 179 (228)
T TIGR02247 105 KLLPEMVKAIKSLRAKGFKTALLTNNFYLDKGPGMAQEAEEALLPSDVMALFDEVVESCLEGLRKPDPR-IYQLVL---- 179 (228)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCCCCCHHHHHHHCCHHHHHHHCCCCCCCHH-HHHHHH----
T ss_conf 568789999999975777588861673056776401220466113667644106556636078899767-999999----
Q ss_pred HHHHHHHCCCCHHH
Q ss_conf 99999850338788
Q gi|255764505|r 190 AIALLESRNFSEND 203 (341)
Q Consensus 190 av~l~~~~~~t~~d 203 (341)
++-+..+++
T Consensus 180 -----~rl~l~P~~ 188 (228)
T TIGR02247 180 -----ERLGLKPEE 188 (228)
T ss_pred -----HHCCCCCCC
T ss_conf -----970799101
No 370
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=43.36 E-value=24 Score=15.62 Aligned_cols=95 Identities=23% Similarity=0.277 Sum_probs=53.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC-----C--EEECCCEEEEEECCCCCHHH--HHHHHHHHC
Q ss_conf 59999338137999999999875088611012330232023-----0--12104707898368780788--766666320
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDL-----G--MITRDDLIIVLSWSGSSDEL--KAILYYARR 136 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdl-----g--~i~~~Dv~i~iS~SG~t~e~--~~~~~~~k~ 136 (341)
-|++.|+|.|+.+..+ |.+ +.-...||-. | +-.++=.||+++--|-+-.+ -.++..++
T Consensus 47 ~v~vsGIGCs~~~~~y----~~~--------~~~h~~HGRa~~~AtGiK~anpdl~Vi~~~GDGd~~~IG~~hl~ha~r- 113 (306)
T PRK05778 47 VVVVSGIGCSSKTPGY----FLS--------HGLHTLHGRAIAFATGAKLANPDLKVIVVGGDGDLASIGGGHFIHAGR- 113 (306)
T ss_pred EEEEECCCCCCCCCCE----EEC--------CCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHCCCHHHHHHHHH-
T ss_conf 8999576676152784----885--------753011144188998998768898699993576121131787899998-
Q ss_pred CCCCE---------EEEECCCCCHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf 45627---------99844788954521453376886155432475
Q gi|255764505|r 137 FSIPL---------IAITSENKSVVACHADIVLTLPKEPESCPHGL 173 (341)
Q Consensus 137 ~~~~i---------I~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~ 173 (341)
++..+ -++|+...||-....-..-..|......|+|+
T Consensus 114 RN~dit~Iv~nN~vYglTgGQ~SpTtp~G~~t~ttp~G~~~~p~n~ 159 (306)
T PRK05778 114 RNVDITVIVENNGVYGLTKGQASPTTPRGSKTKTLPYGNIEPPIDP 159 (306)
T ss_pred HCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 3899469998763323368866989999874664789986788699
No 371
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=43.28 E-value=20 Score=16.08 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=17.6
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCC
Q ss_conf 338137999999999875088611012330232023
Q gi|255764505|r 71 GIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDL 106 (341)
Q Consensus 71 GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdl 106 (341)
||||| .+|+-+|..+..-+.|-..++ +|..|+.+
T Consensus 13 GVGKS-~va~~LaQY~~~~~~~~~~iD-TDpvN~tf 46 (241)
T PRK13886 13 GVGKS-MIAATIAQYKAGKGQKPLCID-TDPVNATF 46 (241)
T ss_pred CCHHH-HHHHHHHHHHHHCCCCCCEEE-CCCCCCCH
T ss_conf 63099-999999999983599985560-89997053
No 372
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=43.23 E-value=24 Score=15.61 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=61.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC--CCHHHHC--------CC--E-----EECCCEEEEEECCCCCHHHH
Q ss_conf 599993381379999999998750886110123--3023202--------30--1-----21047078983687807887
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHA--AEASHGD--------LG--M-----ITRDDLIIVLSWSGSSDELK 128 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~--~ea~Hgd--------lg--~-----i~~~Dv~i~iS~SG~t~e~~ 128 (341)
++-+.=+|.+|.+++.+-.-|..-+.|.+-++. ++-+-|. +- - ..+-|++++-.-++- -.
T Consensus 4 ~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~saGk~i~~~~~~l~v~~~~~~~~~~vDlvffa~~~~v---s~ 80 (336)
T PRK05671 4 PLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASMESAGHSVPFAGKNLRVREVDSFDFSQVKLAFFAAGAAV---SR 80 (336)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCHHH---HH
T ss_conf 887999998649999999998636998026999987656898754689678999788244245988998688166---79
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEEC-CC---CC-CCC--CHHHHHHHHHHHHHHH
Q ss_conf 66666320456279984478895452145337688615-54---32-475--2178999999999999
Q gi|255764505|r 129 AILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEP-ES---CP-HGL--APTTSAIMQLAIGDAL 189 (341)
Q Consensus 129 ~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~-Ea---~~-~~~--aPt~Stt~~l~~~Dal 189 (341)
+..+.+.+.|+.+|-.++.- +..|+.|.+|-.. |. -. -++ .|-.||+..+.-...|
T Consensus 81 ~~a~~~~~aG~~VID~Ss~f-----r~~~vPlvvPEvN~~~l~~~~~~~iVanPnC~t~~l~laL~Pl 143 (336)
T PRK05671 81 SFAEKALAAGCSVIDLSGAL-----PSAQAPNVVPEANAERLASLAAPFLVSSPSASAVALAVALAPL 143 (336)
T ss_pred HHHHHHHHCCCEEEECCCCC-----CCCCCCEEECCCCHHHHHHCCCCCEEECCCCHHHHHHHCCHHH
T ss_conf 98999997699799562013-----3037977740429999960756877867860666666301668
No 373
>PRK07116 flavodoxin; Provisional
Probab=43.14 E-value=24 Score=15.60 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=24.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 7078983687807887666663204562799844
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
-+++-.|.||+|+.+-+.++ +..|+.+.-|.-
T Consensus 3 ~LVvYyS~tGnTk~vA~~I~--~~~gaDi~eI~~ 34 (158)
T PRK07116 3 ILVAYFSATGTTKKVAEKLA--EVTGGDLYEITP 34 (158)
T ss_pred EEEEEECCCCCHHHHHHHHH--HHHCCCEEEEEE
T ss_conf 89999899880999999999--987999799986
No 374
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=42.58 E-value=24 Score=15.54 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=61.8
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHCCCCE-EEEEEECCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--H
Q ss_conf 66632045627998447889545214533-768861554---32475217899999999999999999850338788--8
Q gi|255764505|r 131 LYYARRFSIPLIAITSENKSVVACHADIV-LTLPKEPES---CPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND--F 204 (341)
Q Consensus 131 ~~~~k~~~~~iI~iT~~~~S~la~~ad~~-l~~~~~~Ea---~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d--f 204 (341)
+...|+.|-++..+|++ +.+.|+.+|-. +++=..-.. -.+|.--|.+-|...++-.+=||.=-..+-|-.-| |
T Consensus 4 l~~~K~~g~ki~~lTaY-D~~~A~i~d~agvD~iLVGDSlgmv~~G~~~T~~vtld~mi~H~~aV~rg~~~~~vv~DmPf 82 (254)
T cd06557 4 LQKMKKAGEKIVMLTAY-DYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF 82 (254)
T ss_pred HHHHHHCCCCEEEEECC-CHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 89998679958999758-99999999875998999777588730777664416899999999999711877339985566
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEHHHHHHHHHHHHCCCC
Q ss_conf 753110011112433333210-47543055100238888987410466
Q gi|255764505|r 205 YVLHPGGKLGTLFVCASDVMH-SGDSIPLVKIGCPLIDAITILSEKRF 251 (341)
Q Consensus 205 ~~~HPgG~lg~~Ll~V~DiM~-~~~~ip~V~~~~si~eal~~m~~~~~ 251 (341)
..++.+ .-..+..+..+|. .+.+...+.-.....+.++.+.+.++
T Consensus 83 ~sy~~s--~~~A~~nA~rl~ke~GadaVKlEgg~~~~~~i~~L~~~GI 128 (254)
T cd06557 83 GSYQTS--PEQALRNAARLMKEAGADAVKLEGGAEVAETIRALVDAGI 128 (254)
T ss_pred CCCCCC--HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf 545799--9999999999998559998997988338999999998799
No 375
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=42.58 E-value=21 Score=16.01 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=29.6
Q ss_pred CCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 230121047078983687807887666663204562799844788
Q gi|255764505|r 105 DLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK 149 (341)
Q Consensus 105 dlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~ 149 (341)
+.+-++++|.++...-+|-.- .-+++.||..|+++|++++++.
T Consensus 98 ~~~~i~~g~~VlI~gg~G~vG--~~aiqlak~~Ga~Vi~t~~s~~ 140 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVG--QAAIQLAQHLGAEVFATAGSPE 140 (288)
T ss_pred HHCCCCCCCEEEEECCCCHHH--HHHHHHHHHCCCCEEEEECCHH
T ss_conf 750889999999978986777--9999999973983003408889
No 376
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=42.53 E-value=24 Score=15.54 Aligned_cols=67 Identities=13% Similarity=0.275 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEEE----------CCCCCHHHH
Q ss_conf 0238888987410466200000043232324123403567617823370988348897897----------799878999
Q gi|255764505|r 236 GCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKVI----------LEDTLLTVA 305 (341)
Q Consensus 236 ~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~I----------~~d~~i~eA 305 (341)
+...++|+..+.+.+ +++.|+.=-|.||=-+-++...|...+...-| .|.++ +--.++.++
T Consensus 235 t~e~~~A~~~L~~aG---v~l~NQsVLLrGVND~~evl~~L~~~L~~~gV------~PYYl~~~D~~~G~~hfr~~i~~~ 305 (369)
T COG1509 235 TPEAREACAKLRDAG---VPLLNQSVLLRGVNDDPEVLKELSRALFDAGV------KPYYLHQLDLVQGAAHFRVPIAEG 305 (369)
T ss_pred CHHHHHHHHHHHHCC---CEEECCHHEECCCCCCHHHHHHHHHHHHHCCC------CCEEEECCCCCCCCCCEECCHHHH
T ss_conf 899999999999759---56532410114667999999999999997488------621785167667723351409999
Q ss_pred HHHHHH
Q ss_conf 999996
Q gi|255764505|r 306 MQLLRQ 311 (341)
Q Consensus 306 l~lM~~ 311 (341)
+++|+.
T Consensus 306 ~~i~~~ 311 (369)
T COG1509 306 LQIVEE 311 (369)
T ss_pred HHHHHH
T ss_conf 999999
No 377
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=42.40 E-value=24 Score=15.52 Aligned_cols=115 Identities=22% Similarity=0.214 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHH----HHHHHHHHHHC-CCCCCCCC-CCCHHHH-------CCCEE-ECCCEEE
Q ss_conf 6699999999827995999933813799----99999998750-88611012-3302320-------23012-1047078
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVITGIGKSGHI----GSKLASTLAST-GTPSFFVH-AAEASHG-------DLGMI-TRDDLII 116 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~GvG~S~~i----a~k~a~tl~s~-G~~a~~~~-~~ea~Hg-------dlg~i-~~~Dv~i 116 (341)
++++.+.+.|.+.+ +..++|.|....- +.+++..+... ...+-+.+ ++-.... .++-+ ..-|++|
T Consensus 64 eAl~~ia~~L~~~~-~~~~~g~~~~~~e~~~~~~~la~~~~~~~d~~~~~c~~~~~~a~~~~g~~~~t~~~~~~~ad~il 142 (421)
T TIGR03129 64 EAIEKAAEILKNAK-RPLIYGWSSTSCEAQRAGLELAEKLGAVIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVII 142 (421)
T ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEE
T ss_conf 99999999998617-87699966641789999999999958841477540368999999856987667455650477899
Q ss_pred EEE-CCCCCHH------HH---HHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECC
Q ss_conf 983-6878078------87---666663204562799844788954521453376886155
Q gi|255764505|r 117 VLS-WSGSSDE------LK---AILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPE 167 (341)
Q Consensus 117 ~iS-~SG~t~e------~~---~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~E 167 (341)
.+- |--++.- .+ ......++++.++|.|- -..+.+++.||..|.+.-..+
T Consensus 143 ~~G~Np~~s~P~~~~r~~~~~~~~~~~~~~~~~kliviD-pr~t~ta~~Ad~~l~i~PGtD 202 (421)
T TIGR03129 143 YWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVD-PRKTDTAKLADYHLQIKPGSD 202 (421)
T ss_pred EECCCHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCCHHHHCCEEEECCCCCH
T ss_conf 978885896857887778878899996453598799984-757805563086660189987
No 378
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=42.34 E-value=24 Score=15.52 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCCCCEE------ECCCCCHHHHHHHHH
Q ss_conf 23888898741046620000004323232412340356761782337098834889789------779987899999999
Q gi|255764505|r 237 CPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIKNPKV------ILEDTLLTVAMQLLR 310 (341)
Q Consensus 237 ~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~~p~~------I~~d~~i~eAl~lM~ 310 (341)
++.+.|+..+.++++..-++ |= +.=-.|.-.|+.++. +.++.+++++.-.. -..+.+..+++++|.
T Consensus 11 ~t~rka~~~Le~~gi~~~~~-d~---~~~p~t~eeL~~~l~----~l~~~~l~n~~~~~~k~~~~~~~~ls~~~~i~lm~ 82 (113)
T cd03033 11 ANNARQKALLEAAGHEVEVR-DL---LTEPWTAETLRPFFG----DLPVAEWFNPAAPRVKSGEVVPEALDEEEALALMI 82 (113)
T ss_pred HHHHHHHHHHHHCCCCCEEE-EE---ECCCCCHHHHHHHHH----HCCHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 75799999999879994798-61---068969999999998----58999997514365645688813399999999998
Q ss_pred HCC--CCEEEEEECCCEEEEE
Q ss_conf 679--9589998069848999
Q gi|255764505|r 311 QHN--ISVLMVVDDCQKAIGI 329 (341)
Q Consensus 311 ~~k--I~~LpVVD~~~~lvGi 329 (341)
++. |.+=.|++++..++|-
T Consensus 83 ~~P~LIkRPil~~~~~~~vGf 103 (113)
T cd03033 83 ADPLLIRRPLMQVGDRRMVGF 103 (113)
T ss_pred HCCCEEECCEEEECCEEEECC
T ss_conf 695615687088899988579
No 379
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=42.23 E-value=25 Score=15.50 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=46.9
Q ss_pred CEEE-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCC---CEEEEEEEC
Q ss_conf 0121-04707898368780788766666320456279984478895452145---337688615
Q gi|255764505|r 107 GMIT-RDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHAD---IVLTLPKEP 166 (341)
Q Consensus 107 g~i~-~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad---~~l~~~~~~ 166 (341)
|.+. =+..+|..-+.--|+|+.+.+..+|..|+++.-+++|..+..+..+. +....+..|
T Consensus 30 gvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~K 93 (175)
T COG2179 30 GVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKK 93 (175)
T ss_pred EEEEECCCCEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 8998166751104699899999999999986597799981897888876665259723402259
No 380
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=42.22 E-value=25 Score=15.50 Aligned_cols=100 Identities=23% Similarity=0.246 Sum_probs=55.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCC--HHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89836878078876666632045627998447889--5452145337688615543247521789999999999999999
Q gi|255764505|r 116 IVLSWSGSSDELKAILYYARRFSIPLIAITSENKS--VVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIAL 193 (341)
Q Consensus 116 i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S--~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l 193 (341)
++|-+.|+. -+++++.+|+.|+.++++-+++++ +-.+.+|....++-.+ .....|-.-..+.++
T Consensus 4 vLIanrGei--A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~-----------~~~~Yl~~~~Ii~ia- 69 (109)
T pfam00289 4 VLVANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGP-----------ASESYLNIERILDIA- 69 (109)
T ss_pred EEEECCCHH--HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCC-----------CCCCCCCHHHHHHHH-
T ss_conf 999888799--999999999869979999633441522566505765347998-----------321113799999999-
Q ss_pred HHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf 98503387888753110-011112433333210475430551002
Q gi|255764505|r 194 LESRNFSENDFYVLHPG-GKLGTLFVCASDVMHSGDSIPLVKIGC 237 (341)
Q Consensus 194 ~~~~~~t~~df~~~HPg-G~lg~~Ll~V~DiM~~~~~ip~V~~~~ 237 (341)
+..+ .-..||| |-|-...--++.+.. ..+.++.|..
T Consensus 70 -~~~~-----~~aihpGyGflsEn~~fa~~~~~--~Gi~fiGPs~ 106 (109)
T pfam00289 70 -EKEG-----ADAIHPGYGFLSENAEFAEACEK--AGITFIGPSP 106 (109)
T ss_pred -HHHC-----CCEEECCCCCCCCCHHHHHHHHH--CCCEEECCCH
T ss_conf -9818-----89687797623359999999998--8898999583
No 381
>KOG0585 consensus
Probab=41.83 E-value=25 Score=15.46 Aligned_cols=50 Identities=20% Similarity=0.098 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 99999999999999999999720011366999999998279959999338137
Q gi|255764505|r 24 VQCALRSIIAEKRGLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 24 ~~~a~~~l~~e~~al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~ 76 (341)
.+.|++.++.-...|+-|.-+- ..-.+ .+-.++|....|+|=+.-.|-|-
T Consensus 209 ~~~Ar~ylrDvv~GLEYLH~Qg--iiHRD-IKPsNLLl~~~g~VKIsDFGVs~ 258 (576)
T KOG0585 209 EQQARKYLRDVVLGLEYLHYQG--IIHRD-IKPSNLLLSSDGTVKISDFGVSN 258 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC--EECCC-CCHHHEEECCCCCEEEECCCEEE
T ss_conf 8999999999987788887647--20156-66433577588858860351144
No 382
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=41.38 E-value=25 Score=15.41 Aligned_cols=16 Identities=44% Similarity=0.683 Sum_probs=7.1
Q ss_pred EECCCEEEEE--ECCCCC
Q ss_conf 2104707898--368780
Q gi|255764505|r 109 ITRDDLIIVL--SWSGSS 124 (341)
Q Consensus 109 i~~~Dv~i~i--S~SG~t 124 (341)
+.++.++..+ |-||+|
T Consensus 18 i~~Ge~~aIvG~nGsGKS 35 (226)
T cd03270 18 IPRNKLVVITGVSGSGKS 35 (226)
T ss_pred ECCCCEEEEECCCCCHHH
T ss_conf 859989999878996098
No 383
>PRK08939 primosomal protein DnaI; Reviewed
Probab=41.23 E-value=18 Score=16.43 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=10.2
Q ss_pred HHHHHHHHHHCCCCEEEE
Q ss_conf 899999999679958999
Q gi|255764505|r 302 LTVAMQLLRQHNISVLMV 319 (341)
Q Consensus 302 i~eAl~lM~~~kI~~LpV 319 (341)
-..|.++|++=+--.-||
T Consensus 279 ~~ka~RimeRI~~l~~~v 296 (306)
T PRK08939 279 TVKAARIMERIRYLAKEV 296 (306)
T ss_pred HHHHHHHHHHHHHHCEEE
T ss_conf 799999999999857358
No 384
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=41.15 E-value=25 Score=15.39 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=44.8
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHCCCCE-EEEE-EECC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-
Q ss_conf 6666632045627998447889545214533-7688-6155--432475217899999999999999999850338788-
Q gi|255764505|r 129 AILYYARRFSIPLIAITSENKSVVACHADIV-LTLP-KEPE--SCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND- 203 (341)
Q Consensus 129 ~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~-l~~~-~~~E--a~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d- 203 (341)
.-+...|+.|-++..+|++ +.+.|+.+|-. +++= |..- --.+|.--|.+-|.-..+-.+=||.=-..+-|-.-|
T Consensus 7 ~~l~~~K~~g~ki~~lTay-d~~~A~~~d~~giD~iLVGDSlgmv~~G~~~T~~vtld~mi~H~~aV~rg~~~~~vv~Dm 85 (266)
T PRK00311 7 SDLQKMKQEGEKIVMLTAY-DASFARLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVRRGAPRALVVADM 85 (266)
T ss_pred HHHHHHHHCCCCEEEEECC-CHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 9999998579938999808-999999999759988997753876406775666167899999999998408885399579
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEHHHHHHHHHHHHCCCC
Q ss_conf -8753110011112433333210-47543055100238888987410466
Q gi|255764505|r 204 -FYVLHPGGKLGTLFVCASDVMH-SGDSIPLVKIGCPLIDAITILSEKRF 251 (341)
Q Consensus 204 -f~~~HPgG~lg~~Ll~V~DiM~-~~~~ip~V~~~~si~eal~~m~~~~~ 251 (341)
|..++. +.-..+..+..+|. .+.+...+.-...+.+.++.+.+.++
T Consensus 86 Pf~sy~~--s~~~a~~nA~rl~ke~gadaVKlEgg~~~~~~i~~l~~~GI 133 (266)
T PRK00311 86 PFGSYQA--SPEQALRNAGRLMKEAGAHAVKLEGGEELAETIRRLVERGI 133 (266)
T ss_pred CCCCCCC--CHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8764689--99999999999998569998997888336799999998799
No 385
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=40.83 E-value=3.6 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHCCCCCEEECCCCCHHHHHHHH
Q ss_conf 83488978977998789999999
Q gi|255764505|r 287 DVMIKNPKVILEDTLLTVAMQLL 309 (341)
Q Consensus 287 ~iMt~~p~~I~~d~~i~eAl~lM 309 (341)
+.|..+.-.-..+..+.+++..+
T Consensus 500 ~~M~~~~gvFR~~~~l~~a~~~i 522 (636)
T TIGR01812 500 ETMEANVGVFRTEELLKKAVDEI 522 (636)
T ss_pred HHHHCCCEEEECCHHHHHHHHHH
T ss_conf 88665857987732278899999
No 386
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=40.72 E-value=26 Score=15.34 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=16.7
Q ss_pred EECCCEEEEE--ECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 2104707898--3687807887666663204562799844
Q gi|255764505|r 109 ITRDDLIIVL--SWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 109 i~~~Dv~i~i--S~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
+.++..+..+ |-||+| -+++++--+-+...-.|-+-+
T Consensus 21 i~~Ge~~~i~GpSGsGKS-TLL~~i~gl~~p~sG~i~~~g 59 (206)
T TIGR03608 21 IEKGKMVAIVGESGSGKS-TLLNIIGLLEKPDSGQVYLNG 59 (206)
T ss_pred ECCCCEEEEECCCCCCHH-HHHHHHHCCCCCCCEEEEECC
T ss_conf 869989999879997099-999999759998975999999
No 387
>pfam02887 PK_C Pyruvate kinase, alpha/beta domain. As well as being found in pyruvate kinase this family is found as an isolated domain in some bacterial proteins.
Probab=40.66 E-value=26 Score=15.34 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCC
Q ss_conf 470789836878078876666632045627998447889545214
Q gi|255764505|r 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHA 156 (341)
Q Consensus 112 ~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~a 156 (341)
-..++++|.||+|.-.+.-. +..+||+++|.++ ....+++
T Consensus 17 akaIv~~T~sG~tA~~iS~~----RP~~pI~a~T~~~-~~~r~l~ 56 (117)
T pfam02887 17 AKAIVVLTESGRTARLVSKY----RPGAPIIAVTPNE-GTARRLA 56 (117)
T ss_pred CCEEEEECCCCHHHHHHHHH----CCCCCEEEECCCH-HHHHHHH
T ss_conf 99999988987799999954----9998689965998-9999888
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=39.86 E-value=12 Score=17.79 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCC-CCH-HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8780788766666320456279984478895452145337688615543247-521-78999999999999999998503
Q gi|255764505|r 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG-LAP-TTSAIMQLAIGDALAIALLESRN 198 (341)
Q Consensus 121 SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~-~aP-t~Stt~~l~~~Dalav~l~~~~~ 198 (341)
--|.+++.+.++.+++.|..+|-||- +-.-..+.||-+-.+.-.+=.+... .++ |....+.|++|..+....-
T Consensus 173 P~E~~~lf~~l~~l~~~G~tIi~ITH-KL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~~---- 247 (501)
T COG3845 173 PQEADELFEILRRLAAEGKTIIFITH-KLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRVV---- 247 (501)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHHCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC----
T ss_conf 89999999999999977997999935-0899997637369985774886635777889999999854785453345----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CEEE-----------------EEHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 3878887531100111124333332104754----3055-----------------100238888987410466200000
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLFVCASDVMHSGDS----IPLV-----------------KIGCPLIDAITILSEKRFGCVAVV 257 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~----ip~V-----------------~~~~si~eal~~m~~~~~g~v~Vv 257 (341)
+ |..+-|+-.+.|+++-.+..+ +.-| +-..-+.||+.=+.+-..|.+.+-
T Consensus 248 -----~----~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~ 318 (501)
T COG3845 248 -----K----PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLN 318 (501)
T ss_pred -----C----CCCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEC
T ss_conf -----6----8889997189994468506889740114636870586899970378889999999838874678639998
Q ss_pred CCCCEEEEEEECCCHHHH----HHCC------CCCCCHHHH-----CCCCCE----EECCCCCHHHHHHHHHHCCCC
Q ss_conf 043232324123403567----6178------233709883-----488978----977998789999999967995
Q gi|255764505|r 258 DEGQKLKGIITEGDIFRN----FHKD------LNTLSVEDV-----MIKNPK----VILEDTLLTVAMQLLRQHNIS 315 (341)
Q Consensus 258 d~~~~liGIITdgDlrR~----l~~~------~~~~~v~~i-----Mt~~p~----~I~~d~~i~eAl~lM~~~kI~ 315 (341)
.++ ..|=.+-...|+. +-++ ..+.++.+- -.+.|+ +++.+.-...+.++++++.++
T Consensus 319 G~~--v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr 393 (501)
T COG3845 319 GKD--VLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR 393 (501)
T ss_pred CEE--CCCCCCHHHHHHCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 873--245689899986688417822123766567638887666642555101356457999999999999971943
No 389
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=39.55 E-value=27 Score=15.22 Aligned_cols=115 Identities=13% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEE
Q ss_conf 99999997200113669999999982799599993381379999999998750886110123302320230121047078
Q gi|255764505|r 37 GLSSLESSLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLII 116 (341)
Q Consensus 37 al~~l~~~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i 116 (341)
++.++ .++.+.....+.+++....+..-.=++.|.|.+..+.. +..+|..-|-......|+-....-. .-.-+--++
T Consensus 58 ~~~~~-~rYPd~~~~~Lr~~lA~~~gv~~e~I~~gnGSdeli~~-~~~a~~~~g~~vv~~~p~y~~y~~~-~~~~g~~~~ 134 (370)
T PRK08153 58 AAAEV-WKYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGL-IVRLYVEPGDAVVTSLGAYPTFNYH-VAGFGGRLV 134 (370)
T ss_pred HHHHC-CCCCCCCHHHHHHHHHHHHCCCHHHEEEECCHHHHHHH-HHHHHHCCCCCCCCCCCCCCHHHHH-HHHHCCEEE
T ss_conf 68645-67999778999999999868786679980888999999-9999855999234378875169999-998196699
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC
Q ss_conf 983687807887666663204562799844788954521
Q gi|255764505|r 117 VLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACH 155 (341)
Q Consensus 117 ~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ 155 (341)
.+.......++-.++..+.+.+.++|-| +|||+|-...
T Consensus 135 ~vp~~~~~~d~~~~l~~~~~~~~klv~l-~nPNNPTG~~ 172 (370)
T PRK08153 135 TVPYRDDHEDLDALLDAARRENAPLVYL-ANPDNPMGSW 172 (370)
T ss_pred EEECCCCCCCHHHHHHHCCCCCCCEEEE-CCCCCCCCCC
T ss_conf 9944565448699998603789738997-6895985776
No 390
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=39.49 E-value=27 Score=15.21 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=98.1
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH------------HHHHCCCCC-------C------CC-C
Q ss_conf 72001136699999999827995999933813799999999------------987508861-------1------01-2
Q gi|255764505|r 44 SLQGELSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLAS------------TLASTGTPS-------F------FV-H 97 (341)
Q Consensus 44 ~l~~~~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~------------tl~s~G~~a-------~------~~-~ 97 (341)
.+......++..+++.|.+||-=|++.|+..|.--.-+... ||+--|+=+ | |= .
T Consensus 182 ~~Gaa~~~~i~~~~~~I~~Ak~PVlLlG~~aS~~~~~~Av~rll~k~~LPvVeTfQgAG~vsrele~~TFfGRvGLFrNQ 261 (553)
T TIGR02418 182 KLGAAADADIDEVAEAIKNAKLPVLLLGLRASSQETTEAVRRLLKKTQLPVVETFQGAGVVSRELEDETFFGRVGLFRNQ 261 (553)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCEEECHHCCCCCCEECCCCCCCC
T ss_conf 78887388999999999831996698504788889999999986460688214020051311002456521001144587
Q ss_pred CCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHH--HCCCCCEEEE-----------------ECCCCCHHHHCCCC
Q ss_conf 3302320230121047078983687807887666663--2045627998-----------------44788954521453
Q gi|255764505|r 98 AAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYA--RRFSIPLIAI-----------------TSENKSVVACHADI 158 (341)
Q Consensus 98 ~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~--k~~~~~iI~i-----------------T~~~~S~la~~ad~ 158 (341)
| ||. ++++-|+||.|=|+- ++-=+.. ++..++||.| -++--++|..++.-
T Consensus 262 ~-----GD~-LLk~aDLvItIGYdP-----IEYep~~WN~~~~~~Iv~iD~~~A~i~~~yqP~~eLvGdia~tl~~l~~~ 330 (553)
T TIGR02418 262 P-----GDK-LLKQADLVITIGYDP-----IEYEPRNWNSELDATIVHIDVEPAEIDNNYQPDLELVGDIASTLDLLAER 330 (553)
T ss_pred C-----CHH-HHHHCCEEEEECCCC-----EECCHHHCCCCCCCEEEEEEEEEEEHHHCCCCCHHHHCCHHHHHHHHHHH
T ss_conf 0-----025-775669789833885-----03075544778872068973144212003686144325727779999586
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHCC--CCCC-EEEE
Q ss_conf 37688615543247521789999999999999999985033878887-531100111124333332104--7543-0551
Q gi|255764505|r 159 VLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFY-VLHPGGKLGTLFVCASDVMHS--GDSI-PLVK 234 (341)
Q Consensus 159 ~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~-~~HPgG~lg~~Ll~V~DiM~~--~~~i-p~V~ 234 (341)
.-. -..+.|++--.+.-.=.+ +...+..+++.+++. .+|| +.+=+.|+. .+++ -+|+
T Consensus 331 ~~~--------~~~L~~~~~~~L~~l~~~---~~~~~~~~~~~~~~~Gl~HP--------L~ii~~~Q~~v~dD~Tvt~D 391 (553)
T TIGR02418 331 VEG--------FYELPEDAQDILEDLKQQ---IEELDEVKADLKQAHGLLHP--------LEIIKAMQAIVTDDVTVTVD 391 (553)
T ss_pred HCC--------CCCCCHHHHHHHHHHHHH---HHHHHCCCCCHHHCCCCCCC--------HHHHHHHHHHCCCCCEEEEE
T ss_conf 246--------610588899999999999---98653178752106863053--------88999999744898169870
Q ss_pred EHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEE
Q ss_conf 002388889874104662000000432323241
Q gi|255764505|r 235 IGCPLIDAITILSEKRFGCVAVVDEGQKLKGII 267 (341)
Q Consensus 235 ~~~si~eal~~m~~~~~g~v~Vvd~~~~liGII 267 (341)
-.+---=..+-+..++-..+.|-|-.. =.|+=
T Consensus 392 ~GShyIWmARyf~Sy~AR~lLiSNGmQ-TlGVA 423 (553)
T TIGR02418 392 IGSHYIWMARYFKSYRARHLLISNGMQ-TLGVA 423 (553)
T ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCC-HHHHH
T ss_conf 430588888762256754024335750-31112
No 391
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=39.20 E-value=27 Score=15.18 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=30.0
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHCCCC
Q ss_conf 21047078983687807887666663204562-799844788954521453
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIP-LIAITSENKSVVACHADI 158 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~-iI~iT~~~~S~la~~ad~ 158 (341)
..+-||+|=+|.--.+.+. ++++.++|++ +||-|+..+..+.+.-+.
T Consensus 63 ~~~~DVvIDFS~p~~~~~~---~~~~~~~~~~~ViGTTG~s~~~~~~i~~~ 110 (122)
T pfam01113 63 LADADVLIDFTTPEATLEN---LELALKHGKPLVIGTTGFTEEQLAELKEA 110 (122)
T ss_pred CCCCCEEEEECCHHHHHHH---HHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 1578889990687899999---99999679988998999999999999998
No 392
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=38.94 E-value=27 Score=15.15 Aligned_cols=188 Identities=22% Similarity=0.277 Sum_probs=91.5
Q ss_pred HCCCCEEEEECCCH-HHHHHHHHHHH---------HHCCC--CCCCCCCCCHHHH--C-------------CCEEECCCE
Q ss_conf 27995999933813-79999999998---------75088--6110123302320--2-------------301210470
Q gi|255764505|r 62 AIKGRVVITGIGKS-GHIGSKLASTL---------ASTGT--PSFFVHAAEASHG--D-------------LGMITRDDL 114 (341)
Q Consensus 62 ~~~grv~~~GvG~S-~~ia~k~a~tl---------~s~G~--~a~~~~~~ea~Hg--d-------------lg~i~~~Dv 114 (341)
.-+||+++.|.||- .-.|+-+-.-+ .+.|. ++--+.--||.|- | ++-++++|+
T Consensus 35 ~p~gr~~Vig~GKAs~~MA~a~~~~~~~~~~GvVVt~~g~~~~~~~ieViea~HPvPDe~s~~asrrlL~~v~~l~e~D~ 114 (422)
T COG2379 35 PPKGRTIVIGAGKASAEMARAFEEHWKGPLAGVVVTPYGYGGPCPRIEVIEAGHPVPDEASLKASRRLLELVSGLTEDDL 114 (422)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 88885699961564799999999985264584585567667888862487578999970157999999998507997867
Q ss_pred E-EEEECCCCC-----------HHHHHHHHHHHCCCCCEEE-------EECCCCCHHHHCCC----CEEEEEEECCCCCC
Q ss_conf 7-898368780-----------7887666663204562799-------84478895452145----33768861554324
Q gi|255764505|r 115 I-IVLSWSGSS-----------DELKAILYYARRFSIPLIA-------ITSENKSVVACHAD----IVLTLPKEPESCPH 171 (341)
Q Consensus 115 ~-i~iS~SG~t-----------~e~~~~~~~~k~~~~~iI~-------iT~~~~S~la~~ad----~~l~~~~~~Ea~~~ 171 (341)
| +.||-.|.. .++..+-+.+-+.|++|-. ++.-+...|++.+. +.|.++..+--+|-
T Consensus 115 Vi~LISGGGSaL~e~P~eGitL~d~~avn~~LL~sGA~I~emNtVRkhLS~VKGGrLA~a~~pA~VvsliiSDVpGDd~~ 194 (422)
T COG2379 115 VIVLISGGGSALLELPAEGITLEDLIAVNRALLKSGAPISEMNTVRKHLSRVKGGRLAAAAKPAKVVSLIISDVPGDDPS 194 (422)
T ss_pred EEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCHH
T ss_conf 99998178314003896678789999999999975998699999999885612267887617870799997258899875
Q ss_pred CCC--HH---HHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEEHHHHHHHHH
Q ss_conf 752--17---899999999999999999850338-7888753110011112433333210475430-5510023888898
Q gi|255764505|r 172 GLA--PT---TSAIMQLAIGDALAIALLESRNFS-ENDFYVLHPGGKLGTLFVCASDVMHSGDSIP-LVKIGCPLIDAIT 244 (341)
Q Consensus 172 ~~a--Pt---~Stt~~l~~~Dalav~l~~~~~~t-~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip-~V~~~~si~eal~ 244 (341)
-+| || .|| ..|++++- ++.++- +++...+-- +.-+ -.-+-.|---...+.- +.+...++..+..
T Consensus 195 ~IASGPTv~D~tt-----~~DAlavl--~ry~i~~p~~v~~~l~-~~~~-~t~~~~d~~~~~v~~~iIasn~~sleaaa~ 265 (422)
T COG2379 195 VIASGPTVPDPTT-----REDALAVL--ERYGIALPESVRAHLE-SERA-ETPKPGDERFANVENRIIASNRLSLEAAAS 265 (422)
T ss_pred HCCCCCCCCCCCC-----HHHHHHHH--HHHCCCCCHHHHHHHH-HHCC-CCCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 6014898899986-----67899999--9963206699999984-2102-479998500145415998153899999999
Q ss_pred HHHCCCCCEEEECC
Q ss_conf 74104662000000
Q gi|255764505|r 245 ILSEKRFGCVAVVD 258 (341)
Q Consensus 245 ~m~~~~~g~v~Vvd 258 (341)
...+.++..++..|
T Consensus 266 ~~~~~G~~a~Il~d 279 (422)
T COG2379 266 EARALGFKAVILGD 279 (422)
T ss_pred HHHHCCCEEEEEEC
T ss_conf 99746970699605
No 393
>PTZ00293 thymidine kinase; Provisional
Probab=38.89 E-value=27 Score=15.15 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=35.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEE
Q ss_conf 07898368780788766666320456279984478895452145337688
Q gi|255764505|r 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP 163 (341)
Q Consensus 114 v~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~ 163 (341)
|+++==+||.|.||++-++.++-.+-+++.|....+..- ++-.+..+
T Consensus 8 VI~GPMFSGKTTELIRRlrR~~ia~kkvlVIK~a~DtRY---~~~~V~TH 54 (284)
T PTZ00293 8 LIIGPMFAGKTTELMRRVKREIHARRSCFVIKYSKDTRY---DEHNVASH 54 (284)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCCCEECC
T ss_conf 998072378059999999999977973999818988878---99855678
No 394
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.83 E-value=28 Score=15.14 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=8.3
Q ss_pred HHHHHHCCCCHHHHH
Q ss_conf 999985033878887
Q gi|255764505|r 191 IALLESRNFSENDFY 205 (341)
Q Consensus 191 v~l~~~~~~t~~df~ 205 (341)
+++...-|+..++..
T Consensus 290 ia~a~~lGi~~e~I~ 304 (459)
T PRK02705 290 VAAARLAGLSAEAIA 304 (459)
T ss_pred HHHHHHHCCCHHHHH
T ss_conf 999998588636678
No 395
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=38.81 E-value=15 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=14.5
Q ss_pred EEECCCEEEEEECCCCCHHH
Q ss_conf 12104707898368780788
Q gi|255764505|r 108 MITRDDLIIVLSWSGSSDEL 127 (341)
Q Consensus 108 ~i~~~Dv~i~iS~SG~t~e~ 127 (341)
++.+.++++.+|+.|--+-+
T Consensus 504 lI~~E~v~V~lS~~GyIKr~ 523 (745)
T PRK05561 504 LVPDEPVTVVLSKKGWVRRA 523 (745)
T ss_pred HCCCCCCEEEECCCEEEEEE
T ss_conf 17676618998178049984
No 396
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=38.56 E-value=28 Score=15.11 Aligned_cols=124 Identities=16% Similarity=0.109 Sum_probs=66.7
Q ss_pred EECCCEEEEEE-CCCCC-------HHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHH
Q ss_conf 21047078983-68780-------78876666632045627998447889545214533768861554324752178999
Q gi|255764505|r 109 ITRDDLIIVLS-WSGSS-------DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI 180 (341)
Q Consensus 109 i~~~Dv~i~iS-~SG~t-------~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt 180 (341)
+..-|+++++- |-.++ ......++.+|++|+++|.|- -..+..++.||..|.+.- -+-..
T Consensus 154 ~~~a~~il~~G~Np~~s~~~~~~~p~~~~~~~~a~~~GaklIviD-Pr~t~ta~~Ad~~l~irP-----------GtD~a 221 (539)
T cd02762 154 IDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVID-PRRTETAKLADEHLFVRP-----------GTDAW 221 (539)
T ss_pred HHHCCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEC-CCCCCHHHHHHHHHCCCC-----------CCHHH
T ss_conf 962989999888679957874334799999999997799899985-868848998756740588-----------84699
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCEEEE--EHHHHHHHHHHHHCCCCCE
Q ss_conf 9999999999999985033878887531100111124-33333210475430551--0023888898741046620
Q gi|255764505|r 181 MQLAIGDALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDVMHSGDSIPLVK--IGCPLIDAITILSEKRFGC 253 (341)
Q Consensus 181 ~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~~~~ip~V~--~~~si~eal~~m~~~~~g~ 253 (341)
..+++...| -..|+--++|...|-.|- ..+ -.+.++ +.+.+.-+. +...+.++.+.+.+.+-.+
T Consensus 222 l~la~~~~i-----i~~gl~D~~fl~~~t~G~--e~l~~~~~~~--tpe~~a~itGV~~~~I~~~A~~~a~~~~~~ 288 (539)
T cd02762 222 LLAAMLAVL-----LAEGLTDRRFLAEHCDGL--DEVRAALAEF--TPEAYAPRCGVPAETIRRLAREFAAAPSAA 288 (539)
T ss_pred HHHHHHHHH-----HHHCCHHHHHHHHHCCCH--HHHHHHHHHC--CHHHHHHHCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 999998776-----651000577777641549--9999998608--988887652998899999999985389789
No 397
>PRK05826 pyruvate kinase; Provisional
Probab=37.97 E-value=28 Score=15.05 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=13.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 789836878078876666632045
Q gi|255764505|r 115 IIVLSWSGSSDELKAILYYARRFS 138 (341)
Q Consensus 115 ~i~iS~SG~t~e~~~~~~~~k~~~ 138 (341)
.|++|+-....++.++=++++++|
T Consensus 189 ~ialSFVrsa~DV~~lr~~l~~~~ 212 (461)
T PRK05826 189 YIAVSFVRNAEDVEEARRLLREAG 212 (461)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 997468898678999999999729
No 398
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=37.97 E-value=28 Score=15.05 Aligned_cols=122 Identities=15% Similarity=0.264 Sum_probs=64.4
Q ss_pred ECCCEEEEEE-CCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1047078983-687807-88766666320456279984478895452145337688615543247521789999999999
Q gi|255764505|r 110 TRDDLIIVLS-WSGSSD-ELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGD 187 (341)
Q Consensus 110 ~~~Dv~i~iS-~SG~t~-e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~D 187 (341)
..-|++|.+- +-.++. .....+..++++|+++|.|-- ..|..++.||..|.+.-..+ ....+++..
T Consensus 156 ~~a~~il~~G~N~~~~~~~~~~~~~~a~~~GaklivvdP-r~t~ta~~Ad~~l~irPGTD-----------~al~la~~~ 223 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDP-YRTATAARADLHIQIRPGTD-----------GALALGVAK 223 (501)
T ss_pred HHCCEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECC-CCCCHHHHHCEECCCCCCCC-----------HHHHHHHHH
T ss_conf 629699998988112155389999999987997999668-87717886287004679977-----------999852213
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCE-EEE-EHHHHHHHHHHHHCCCCC
Q ss_conf 999999985033878887531100111124-33333210475430-551-002388889874104662
Q gi|255764505|r 188 ALAIALLESRNFSENDFYVLHPGGKLGTLF-VCASDVMHSGDSIP-LVK-IGCPLIDAITILSEKRFG 252 (341)
Q Consensus 188 alav~l~~~~~~t~~df~~~HPgG~lg~~L-l~V~DiM~~~~~ip-~V~-~~~si~eal~~m~~~~~g 252 (341)
.+.+ .+.--++|...|--|- ..+ -.|++. +.+.+. .+. +-..|+++.+.+.+.+-.
T Consensus 224 ----~ii~-e~~~D~~fv~~~t~Gf--e~l~~~v~~~--tpe~~a~itgv~~~~I~~lA~~~a~~~~~ 282 (501)
T cd02766 224 ----VLFR-EGLYDRDFLARHTEGF--EELKAHLETY--TPEWAAEITGVSAEEIEELARLYGEAKPP 282 (501)
T ss_pred ----HHHH-CCCCCCCHHHHHCCHH--HHHHHHHHCC--CHHHHHHHHCCCHHHHHHHHHHHCCCCCE
T ss_conf ----9987-7995332577751609--9999876549--99998777099999999999974146864
No 399
>pfam12396 DUF3659 Protein of unknown function (DUF3659). This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=37.90 E-value=21 Score=16.01 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.5
Q ss_pred EECCCCCEEEEEEECCCHHHHHHCC
Q ss_conf 0000432323241234035676178
Q gi|255764505|r 255 AVVDEGQKLKGIITEGDIFRNFHKD 279 (341)
Q Consensus 255 ~Vvd~~~~liGIITdgDlrR~l~~~ 279 (341)
-|+|++++++|=+.+||+.+...+.
T Consensus 14 ~V~d~~G~~vGrvveGd~~~L~G~~ 38 (64)
T pfam12396 14 NVVDKDGNVVGRVVEGDPKKLAGRK 38 (64)
T ss_pred EEECCCCCEEEEEECCCHHHCCCCC
T ss_conf 0989999898898148989905975
No 400
>TIGR01048 lysA diaminopimelate decarboxylase; InterPro: IPR002986 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. These conserved motifs suggest a common structural arrangement for positioning of substrate and the cofactor pyridoxal 5'-phosphate among bacterial DAP decarboxylases, eukaryotic ornithine decarboxylases and arginine decarboxylases . The structure of bacterial diaminopimelate decarboxylase has been determined . ; GO: 0008836 diaminopimelate decarboxylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=37.82 E-value=20 Score=16.12 Aligned_cols=197 Identities=17% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHH----CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC--------------------------CC
Q ss_conf 3669999999982----79959999338137999999999875088611012--------------------------33
Q gi|255764505|r 50 SFQFHCAVEKIKA----IKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVH--------------------------AA 99 (341)
Q Consensus 50 ~~~~~~av~~i~~----~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~--------------------------~~ 99 (341)
.-++..|...=.. +. ||+|.|+|||--==+. ....++++|-++ |.
T Consensus 84 ~GEL~~A~~AG~~~~~~~~-~i~F~Gn~Ks~~El~~----Al~~~i~~~nVdS~~El~~l~~~A~e~G~~~~i~~RvNP~ 158 (431)
T TIGR01048 84 GGELYRALAAGFPLQEIPE-KIVFSGNGKSRAELER----ALELGIRCINVDSFSELELLNEIAPELGKKARISLRVNPD 158 (431)
T ss_pred HHHHHHHHHHCCCCCCCCC-CEEEECCCCCHHHHHH----HHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 1699999980888556664-3689658778899999----9963798999768899999997352138558999972688
Q ss_pred -CHHHHCCCEEECCCEEEEEEC-CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEE--------EECC--
Q ss_conf -023202301210470789836-8780788766666320456279984478895452145337688--------6155--
Q gi|255764505|r 100 -EASHGDLGMITRDDLIIVLSW-SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLP--------KEPE-- 167 (341)
Q Consensus 100 -ea~Hgdlg~i~~~Dv~i~iS~-SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~--------~~~E-- 167 (341)
||-|-.-=.=.-.|==+.|+. ||+..+....+. +..+..++||.+.-.|-|-..+.+..... ...|
T Consensus 159 VdakTHpyI~TG~~~sKFG~~~~sG~a~~~~~~a~--~~~~l~~vG~H~HIGSQi~d~~Pf~~A~~~v~~~~~~l~~~yG 236 (431)
T TIGR01048 159 VDAKTHPYISTGLKDSKFGIDVESGEALEAYLYAL--QLENLEIVGIHCHIGSQILDLSPFVEAAEKVVKLVEELKAEYG 236 (431)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHH--HCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 75987831221000365477745753178999998--3789938998643373010234079999999999998888716
Q ss_pred ---------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Q ss_conf ---------------43247521789999999999999999985033-87888753110----01111243333321047
Q gi|255764505|r 168 ---------------SCPHGLAPTTSAIMQLAIGDALAIALLESRNF-SENDFYVLHPG----GKLGTLFVCASDVMHSG 227 (341)
Q Consensus 168 ---------------a~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~-t~~df~~~HPg----G~lg~~Ll~V~DiM~~~ 227 (341)
-.+.+-+|+.+-.++..+ +.|.=.. ..|+ .++ -..=|| |+=|-+|++|.-+=...
T Consensus 237 ~~l~~ld~GGGLGi~Y~~e~~~p~~~~yA~~~~-~~l~~~~--~~g~~~~~--li~EPGRslVa~aG~Llt~V~~~K~~~ 311 (431)
T TIGR01048 237 IDLEFLDLGGGLGIPYTPEEEPPDLSEYAQAIL-AALEGYA--RLGLPDPK--LILEPGRSLVANAGVLLTRVGFVKEVG 311 (431)
T ss_pred CEEEEEECCCCEEEECCCCCCCCCHHHHHHHHH-HHHHHHH--HHCCCCCE--EEEECCCCEECCCCEEEEEEEEEEECC
T ss_conf 007999838722240068888669899999999-9988677--52799637--999226000204517899876687468
Q ss_pred CCCEEEEEHHHHHHHHHHH-HCCCCCEEEECCC
Q ss_conf 5430551002388889874-1046620000004
Q gi|255764505|r 228 DSIPLVKIGCPLIDAITIL-SEKRFGCVAVVDE 259 (341)
Q Consensus 228 ~~ip~V~~~~si~eal~~m-~~~~~g~v~Vvd~ 259 (341)
.---+|--|.-+.|-++=+ -+.... +.++++
T Consensus 312 ~~r~Fv~VDaGMNDliRPalY~AyH~-i~~~~~ 343 (431)
T TIGR01048 312 SVRNFVIVDAGMNDLIRPALYGAYHH-IIVANR 343 (431)
T ss_pred CEEEEEEEECCCCCCHHHHHHCCCEE-EEECCC
T ss_conf 57899998077550012564336325-775266
No 401
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=37.51 E-value=29 Score=15.00 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=25.9
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1210470789836878078876666632045627998
Q gi|255764505|r 108 MITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAI 144 (341)
Q Consensus 108 ~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~i 144 (341)
.+.+-|.++. |...-|+|+++.++.+|--+..-+|+
T Consensus 42 ~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gv 77 (324)
T COG0111 42 ALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGV 77 (324)
T ss_pred HCCCCCEEEE-ECCCCCHHHHHCCCCCEEEEEECCCC
T ss_conf 4033788999-36888999982188861999905165
No 402
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.46 E-value=29 Score=15.00 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=59.0
Q ss_pred HHHHHH-HHHHHHHHCCCCCC--EEEEEHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHH-HH-CCCCCCCH
Q ss_conf 011112-43333321047543--055100238888987410466200000043232324123403567-61-78233709
Q gi|255764505|r 211 GKLGTL-FVCASDVMHSGDSI--PLVKIGCPLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRN-FH-KDLNTLSV 285 (341)
Q Consensus 211 G~lg~~-Ll~V~DiM~~~~~i--p~V~~~~si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~-l~-~~~~~~~v 285 (341)
|.++.- |.+|...-.+++-+ ..+.....+..+++.+.+.+ |.++.++.+++-+|+... ++.+ +. ++......
T Consensus 227 G~~~~~~LVRVHs~~~~gDvlgs~~~d~g~qL~~Al~~I~~eg-GvlVyLr~egrgigl~~k--i~ay~lqd~g~dt~ea 303 (387)
T PRK09318 227 EPLESVPLVRIHSECVTGDTLSSLRCDCGSQLENALRMISKEG-GILIYLRQEGRGIGLSNK--IKAYELQDKGLDTVEA 303 (387)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHH--HHHHHHHHCCCCCHHC
T ss_conf 7767884056542033341213568885579999999998559-889999258865106777--7766644427873000
Q ss_pred HHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEE-ECCCEEEEE
Q ss_conf 88348897897799878999999996799589998-069848999
Q gi|255764505|r 286 EDVMIKNPKVILEDTLLTVAMQLLRQHNISVLMVV-DDCQKAIGI 329 (341)
Q Consensus 286 ~~iMt~~p~~I~~d~~i~eAl~lM~~~kI~~LpVV-D~~~~lvGi 329 (341)
..-....+ ..-..--+.+++.+-+++.+-++ |+..+++|+
T Consensus 304 n~~lg~~~----D~R~YGiGAQIL~dLGV~kmrLLTnnP~K~~gL 344 (387)
T PRK09318 304 NLALGFKE----DERDYAAAFQILKALGIEKVRLLTNNPRKTKAL 344 (387)
T ss_pred HHCCCCCC----CCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 00047766----665133999999986999379968995045557
No 403
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.29 E-value=29 Score=14.98 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=16.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 799599993381379999999998750886
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSKLASTLASTGTP 92 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k~a~tl~s~G~~ 92 (341)
-| ||.+.|.|+||.-+-++ |.+-|..
T Consensus 3 ~K-kvlV~GlG~SG~s~a~~---L~~~g~~ 28 (418)
T PRK00683 3 LQ-RVVVLGLGVTGKSVARF---LAQKGVY 28 (418)
T ss_pred CC-EEEEEEECHHHHHHHHH---HHHCCCE
T ss_conf 86-69998088879999999---9978298
No 404
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=37.24 E-value=29 Score=14.97 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=49.0
Q ss_pred CEEEEECCCHHH-HHHHHHHHHHHCCCC------CCCC-CCCC---------------HH-------HHCC-CEEE--CC
Q ss_conf 599993381379-999999998750886------1101-2330---------------23-------2023-0121--04
Q gi|255764505|r 66 RVVITGIGKSGH-IGSKLASTLASTGTP------SFFV-HAAE---------------AS-------HGDL-GMIT--RD 112 (341)
Q Consensus 66 rv~~~GvG~S~~-ia~k~a~tl~s~G~~------a~~~-~~~e---------------a~-------Hgdl-g~i~--~~ 112 (341)
||+|+|.|..|. ||+-+...+.+-|.+ .+++ +.-- .. .++| ..+. +-
T Consensus 27 riv~~GAGsAg~gia~~l~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~dl~~~k~~~a~~~~~~~~~~L~e~v~~~kp 106 (279)
T cd05312 27 RILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKP 106 (279)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCC
T ss_conf 79997975899999999999999859997886170999658875317999864999999874745689999999972489
Q ss_pred CEEEEEECCC--CCHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 7078983687--8078876666632045627998447889
Q gi|255764505|r 113 DLIIVLSWSG--SSDELKAILYYARRFSIPLIAITSENKS 150 (341)
Q Consensus 113 Dv~i~iS~SG--~t~e~~~~~~~~k~~~~~iI~iT~~~~S 150 (341)
|++|..|.-| =|+|+++.+. +...-|+|=--+||.+
T Consensus 107 ~vlIG~S~~~g~ft~e~v~~Ma--~~~e~PIIFaLSNPt~ 144 (279)
T cd05312 107 TVLIGLSGVGGAFTEEVVRAMA--KSNERPIIFALSNPTS 144 (279)
T ss_pred CEEEEECCCCCCCCHHHHHHHH--HCCCCCEEEECCCCCC
T ss_conf 7799806898977999999998--4599977996379976
No 405
>KOG4232 consensus
Probab=36.93 E-value=15 Score=17.04 Aligned_cols=22 Identities=32% Similarity=0.212 Sum_probs=17.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5033878887531100111124
Q gi|255764505|r 196 SRNFSENDFYVLHPGGKLGTLF 217 (341)
Q Consensus 196 ~~~~t~~df~~~HPgG~lg~~L 217 (341)
...|+..-|...||++.++..+
T Consensus 281 ~~~~~~~~~i~~~~~~~~~~~~ 302 (430)
T KOG4232 281 PDRFYLRAFIYLHWGWGLLLLS 302 (430)
T ss_pred HHHHHHHHHHHHCCHHHHHHHH
T ss_conf 1467776677740002567887
No 406
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=36.91 E-value=29 Score=14.94 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8078876666632
Q gi|255764505|r 123 SSDELKAILYYAR 135 (341)
Q Consensus 123 ~t~e~~~~~~~~k 135 (341)
+..|+.+....++
T Consensus 173 ~~~el~~a~~~~~ 185 (449)
T COG0439 173 NEEELEAAFEAAR 185 (449)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999999
No 407
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=36.87 E-value=29 Score=14.93 Aligned_cols=97 Identities=21% Similarity=0.225 Sum_probs=55.6
Q ss_pred HHHCCCCEEEEECCCHHHH-HHH----------------HHHHHHHCCCCCCCCCCCCH--HHHCCCEEECCCEEEEEEC
Q ss_conf 9827995999933813799-999----------------99998750886110123302--3202301210470789836
Q gi|255764505|r 60 IKAIKGRVVITGIGKSGHI-GSK----------------LASTLASTGTPSFFVHAAEA--SHGDLGMITRDDLIIVLSW 120 (341)
Q Consensus 60 i~~~~grv~~~GvG~S~~i-a~k----------------~a~tl~s~G~~a~~~~~~ea--~Hgdlg~i~~~Dv~i~iS~ 120 (341)
+.+.+++|+++|.|..|.+ |+- ....+.+.|.|.+|=++++. +| ..|.=+..=+++++..
T Consensus 395 ~~~~~~~VII~G~GRvGq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v~yGDat~~~vL~-~AGi~~Ar~vViaidd 473 (615)
T PRK03562 395 IDEEQPRVIIAGFGRFGQIVGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLE-SAGAAKAEVLINAIDD 473 (615)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHH-HCCCCCCCEEEEEECC
T ss_conf 567899989990280469999999978998799979999999999679908976899999998-6791406889999498
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCE
Q ss_conf 878078876666632045627998447889545214533
Q gi|255764505|r 121 SGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIV 159 (341)
Q Consensus 121 SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~ 159 (341)
.-.+.++++.++.. ....+|++=+.+. .-..++-+.-
T Consensus 474 ~~~~~~iv~~~r~~-~P~l~IiaRard~-~~~~~L~~~G 510 (615)
T PRK03562 474 PQTNLQLTELVKEH-FPHLQIIARARDV-DHYIRLRQAG 510 (615)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEEECCH-HHHHHHHHCC
T ss_conf 99999999999975-8998699983977-8899999789
No 408
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=36.69 E-value=24 Score=15.58 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHCCCCCE---EEEECCCCCHHHHCCC-C---------EEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78078876666632045627---9984478895452145-3---------376886155432475217899999999999
Q gi|255764505|r 122 GSSDELKAILYYARRFSIPL---IAITSENKSVVACHAD-I---------VLTLPKEPESCPHGLAPTTSAIMQLAIGDA 188 (341)
Q Consensus 122 G~t~e~~~~~~~~k~~~~~i---I~iT~~~~S~la~~ad-~---------~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Da 188 (341)
-|-+.+.+++++|+..|+.+ ||..+...+-....-| + .+++ .++|+ -..+.-.=.|+
T Consensus 120 eNi~~Tkevve~Ah~~gv~VEaElG~vGg~e~g~~g~edg~~~e~~~~~~~~yT-dPeeA---------~~Fv~~TgvD~ 189 (347)
T PRK09196 120 YNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLT-DPEEA---------ADFVKKTQVDA 189 (347)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-CHHHH---------HHHHHHHCCCC
T ss_conf 999999999999987398499960210475667777666755555554443168-99999---------99999748770
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH--HHHHHHHHHCCCCCEEEECCCCCEEEEE
Q ss_conf 99999985033878887531100111124333332104754305510023--8888987410466200000043232324
Q gi|255764505|r 189 LAIALLESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCP--LIDAITILSEKRFGCVAVVDEGQKLKGI 266 (341)
Q Consensus 189 lav~l~~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~s--i~eal~~m~~~~~g~v~Vvd~~~~liGI 266 (341)
||+++=..-|.-+ ....|.|.. -.+-+++++-..-.++|.|-...| -.+.++.+++++ |.++ + -.|
T Consensus 190 LAvaiGt~HG~YK---~~~~P~~~~-L~~~rL~eI~~~vp~~pLVLHGgS~vp~~~~~~~~~~g-g~~~--~----~~G- 257 (347)
T PRK09196 190 LAIAIGTSHGAYK---FTRKPTGDV-LAIDRIKEIHARIPNTHLVMHGSSSVPQELLDIINEYG-GDMP--E----TYG- 257 (347)
T ss_pred CHHHHCCCCCCCC---CCCCCCCCC-CCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHC-CCCC--C----CCC-
T ss_conf 3001101346665---778997220-36999999998456786787789688678999998736-7665--4----469-
Q ss_pred EECCCHHHHHHCCCC------------CCCHHHHCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 123403567617823------------370988348897897799878999999996
Q gi|255764505|r 267 ITEGDIFRNFHKDLN------------TLSVEDVMIKNPKVILEDTLLTVAMQLLRQ 311 (341)
Q Consensus 267 ITdgDlrR~l~~~~~------------~~~v~~iMt~~p~~I~~d~~i~eAl~lM~~ 311 (341)
+++-++|+++..++. ...+.+++..+|-..+|...+..+.+.|.+
T Consensus 258 ~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~avr~~l~~np~~~Dpr~~~~~~~~a~~~ 314 (347)
T PRK09196 258 VPVEEIQEGIKHGVRKVNIDTDLRLASTGAIRRFLAENPSEFDPRKYLKPAMEAMKK 314 (347)
T ss_pred CCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 899999999980964663374899999999999998687868959999999999999
No 409
>cd02169 Citrate_lyase_ligase Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=36.57 E-value=9.4 Score=18.53 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred HHHHHHHCCCCCCCCC--CCC-HHHHCCCE--EECCCEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCC-----
Q ss_conf 9999875088611012--330-23202301--2104707898368-78078876666632045627998447889-----
Q gi|255764505|r 82 LASTLASTGTPSFFVH--AAE-ASHGDLGM--ITRDDLIIVLSWS-GSSDELKAILYYARRFSIPLIAITSENKS----- 150 (341)
Q Consensus 82 ~a~tl~s~G~~a~~~~--~~e-a~Hgdlg~--i~~~Dv~i~iS~S-G~t~e~~~~~~~~k~~~~~iI~iT~~~~S----- 150 (341)
+......-|...+|+- |.. .+-.+||. |...|-+++.-++ ..-+.-++-++..+..|-++-+|.-|.|-
T Consensus 50 L~~~~~~~G~~h~FvfTKp~~~~~F~~lGF~~ia~~~~~~llEng~~~~~~y~~~l~~~~~~~~~igaIVMNaNPFTlGH 129 (296)
T cd02169 50 LINRAFERGIFHLFVFTKPENVKFFSSLGFKELAASDQVALLENGRPGIADYLKSLPKPRQPGKKIAAIVMNANPFTLGH 129 (296)
T ss_pred HHHHHHHCCCCEEEEEECCCHHHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH
T ss_conf 99999976996489993710577787589779887692799856861599999985650278982569999379875147
Q ss_pred -----HHHHCCCCEEEEEEECCCCCC
Q ss_conf -----545214533768861554324
Q gi|255764505|r 151 -----VVACHADIVLTLPKEPESCPH 171 (341)
Q Consensus 151 -----~la~~ad~~l~~~~~~Ea~~~ 171 (341)
.-|+.||++..--|.+|+.-+
T Consensus 130 rYLvE~Aa~~~D~l~vFVV~ED~S~F 155 (296)
T cd02169 130 RYLVEKAASENDWVYVFVVSEDSSLF 155 (296)
T ss_pred HHHHHHHHHHCCEEEEEEEECCCCCC
T ss_conf 99999999649989999994545648
No 410
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=36.48 E-value=30 Score=14.89 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=32.7
Q ss_pred EECCCEEEEEE-CCCCCHHHH-HHHHHHHC--CCCCEEEEECCCCCHHHHCCCCEEEEE
Q ss_conf 21047078983-687807887-66666320--456279984478895452145337688
Q gi|255764505|r 109 ITRDDLIIVLS-WSGSSDELK-AILYYARR--FSIPLIAITSENKSVVACHADIVLTLP 163 (341)
Q Consensus 109 i~~~Dv~i~iS-~SG~t~e~~-~~~~~~k~--~~~~iI~iT~~~~S~la~~ad~~l~~~ 163 (341)
+..-|+++++. +-.++.-+. .-+..+++ +|+++|.|- -..|..++.||..|.+.
T Consensus 155 ~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~Gaklvvid-Pr~t~ta~~Ad~~l~ir 212 (565)
T cd02754 155 IEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVD-PRRTRTADIADLHLPIR 212 (565)
T ss_pred HHHCCEEEEECCCHHHHCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHHCC
T ss_conf 96499999988883686779999999999856998899956-88781899866450048
No 411
>TIGR02707 butyr_kinase butyrate kinase; InterPro: IPR011245 This group represents bacterial butyrate kinase, an enzyme that facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate . The final steps in butyrate synthesis by anaerobic bacteria can occur via butyrate kinase and phosphotransbutyrylase or via butyryl-CoA:acetate CoA-transferase, the latter providing the dominant route for butyrate formation in human colonic bacteria .; GO: 0005524 ATP binding, 0047761 butyrate kinase activity, 0016310 phosphorylation, 0005737 cytoplasm.
Probab=36.46 E-value=22 Score=15.79 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHH-H-HHHHHHCCCCCCEEEEEHHHHHHHHHHH---HCCCC
Q ss_conf 999999999999999998503387888753110-0111124-3-3333210475430551002388889874---10466
Q gi|255764505|r 178 SAIMQLAIGDALAIALLESRNFSENDFYVLHPG-GKLGTLF-V-CASDVMHSGDSIPLVKIGCPLIDAITIL---SEKRF 251 (341)
Q Consensus 178 Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPg-G~lg~~L-l-~V~DiM~~~~~ip~V~~~~si~eal~~m---~~~~~ 251 (341)
=++-.|=++|-+-+|.+- +||.++-.+-==| |-|=.=| + =++++... .-.-|..-+.++..| -.|.+
T Consensus 212 ERsG~LP~~dlv~lCySG--kyT~~E~kKkI~G~GGl~ayLGTnD~reV~~~-----I~~GD~kA~~ildAMaYQiAKeI 284 (353)
T TIGR02707 212 ERSGTLPLGDLVDLCYSG--KYTKEEMKKKIVGKGGLVAYLGTNDAREVEKK-----IEAGDEKAKLILDAMAYQIAKEI 284 (353)
T ss_pred CCCCCCCHHHHHHHHHCC--CHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 545656588899987276--10388999985267453325455888899999-----97310889999986545875677
Q ss_pred CEEEECCCCCEEEEEEECCCHHHHHHCCCCCCCHHHHCCC-CCEEECCCCCHHHHHHH
Q ss_conf 2000000432323241234035676178233709883488-97897799878999999
Q gi|255764505|r 252 GCVAVVDEGQKLKGIITEGDIFRNFHKDLNTLSVEDVMIK-NPKVILEDTLLTVAMQL 308 (341)
Q Consensus 252 g~v~Vvd~~~~liGIITdgDlrR~l~~~~~~~~v~~iMt~-~p~~I~~d~~i~eAl~l 308 (341)
|..-||=+ |++-=|+=-|=|. -.+.+.-..+.+-.+- -|+.|.|...=.+||..
T Consensus 285 G~mavVL~-G~VDAI~LTGGlA--ys~~f~v~~I~~~v~fIAPv~vYPGEdEm~AL~~ 339 (353)
T TIGR02707 285 GKMAVVLK-GKVDAIILTGGLA--YSKYFFVSEIRKRVSFIAPVLVYPGEDEMEALAE 339 (353)
T ss_pred HCCEEEEC-CCEEEEEECCCHH--CCCCHHHHHHHHCCCEECCEEEECCCCHHHHHHC
T ss_conf 42504003-7266898546013--0620455877613321036688259818999852
No 412
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=36.46 E-value=30 Score=14.89 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCEEEEEE
Q ss_conf 02388889874104662000000432323241
Q gi|255764505|r 236 GCPLIDAITILSEKRFGCVAVVDEGQKLKGII 267 (341)
Q Consensus 236 ~~si~eal~~m~~~~~g~v~Vvd~~~~liGII 267 (341)
...+.+|++.|.+.+.|.++.++++++=+|++
T Consensus 67 g~qL~~Am~~I~~~g~GviV~L~qegrg~gl~ 98 (193)
T cd00641 67 GPQLEEALEEIAEEGGGVLLYLRQEGRGIGLA 98 (193)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCHH
T ss_conf 68999999999873884899984488753467
No 413
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=36.40 E-value=26 Score=15.37 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=10.6
Q ss_pred CCCCEEEEECCCHHHHHHH
Q ss_conf 7995999933813799999
Q gi|255764505|r 63 IKGRVVITGIGKSGHIGSK 81 (341)
Q Consensus 63 ~~grv~~~GvG~S~~ia~k 81 (341)
+| ||-++|.|-||+.|-|
T Consensus 1 ~K-rVAIIGAG~SGL~a~K 18 (532)
T pfam00743 1 AK-KVAVIGAGVSGLSSIK 18 (532)
T ss_pred CC-EEEEECCCHHHHHHHH
T ss_conf 98-7999897299999999
No 414
>PRK10864 putative methyltransferase; Provisional
Probab=36.32 E-value=30 Score=14.87 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=17.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 04707898368780788766666320456279984
Q gi|255764505|r 111 RDDLIIVLSWSGSSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 111 ~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
+.|+|+++-.=.....+=.++..|-..|+.-|-++
T Consensus 198 ~~~~lL~LDgV~DP~NlGAIiRSAaafGv~gVIl~ 232 (348)
T PRK10864 198 AQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQ 232 (348)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 99859997897797158899999998589889979
No 415
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein..
Probab=36.32 E-value=27 Score=15.22 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-
Q ss_conf 7887666663204562799844788954521453376886155432475217899999999999999999850338788-
Q gi|255764505|r 125 DELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEND- 203 (341)
Q Consensus 125 ~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~d- 203 (341)
+=++++++.+|+.|=.++.||+... |.=+. + |..-+.-+..-+--+|...++|..+=
T Consensus 29 ~Gv~~~l~~~K~~Gy~L~lvTNQSG----------I~RG~------f------t~~~F~~LT~~~~~SLf~e~d~~LDGI 86 (178)
T TIGR00213 29 DGVIDALRELKKLGYKLVLVTNQSG----------IARGY------F------TEKQFEQLTEWLDWSLFAERDVDLDGI 86 (178)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC----------CCCCC------C------CHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 6699999998745827889874565----------54354------2------778899999999888765248873632
Q ss_pred -HHHHHHHHHHHH
Q ss_conf -875311001111
Q gi|255764505|r 204 -FYVLHPGGKLGT 215 (341)
Q Consensus 204 -f~~~HPgG~lg~ 215 (341)
|-..||-|+.+.
T Consensus 87 YyC~H~p~~~~~e 99 (178)
T TIGR00213 87 YYCPHHPEGSKEE 99 (178)
T ss_pred EECCCCCCCCHHH
T ss_conf 4457897320135
No 416
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=36.09 E-value=30 Score=14.85 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=46.9
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCC--------CEEEEEEEC---
Q ss_conf 8887-5311001111243333321047543055100238888987410466200000043--------232324123---
Q gi|255764505|r 202 NDFY-VLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEG--------QKLKGIITE--- 269 (341)
Q Consensus 202 ~df~-~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~--------~~liGIITd--- 269 (341)
.+|. .|.+.=+|-.+..++..=|.-.+. |......++-+..+++.+++.+||+-.+ -++.|-=++
T Consensus 453 ~~f~~LY~~~~~i~eKIe~IA~eIYGA~~---V~~s~~A~~qL~~~e~~G~~~lPVCmAKTqySfSdDp~l~GaP~gf~l 529 (577)
T PRK13506 453 SQFKLLYPDEMSLEAKLMTLAEVGYGAAG---VSLSDKAKQQLAELTALGYDHLPVCMAKTPLSISHDPSLKGVPTDFEV 529 (577)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCC---EEECHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHCCCCCCEE
T ss_conf 88631279999999999999986239985---788999999999999759998887687478775779254289999868
Q ss_pred --CCHHHHHHCCCCCCCHHHHCCCC
Q ss_conf --40356761782337098834889
Q gi|255764505|r 270 --GDIFRNFHKDLNTLSVEDVMIKN 292 (341)
Q Consensus 270 --gDlrR~l~~~~~~~~v~~iMt~~ 292 (341)
+|+|-....++--.-..++|+=+
T Consensus 530 ~VrevrlsaGAGFIV~l~G~ImTMP 554 (577)
T PRK13506 530 PIRELRLCAGAGFVTALVGNVMTMP 554 (577)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 7408998688866999967522279
No 417
>PRK09814 hypothetical protein; Provisional
Probab=35.84 E-value=30 Score=14.82 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=35.2
Q ss_pred CCEEECCCEEEEEECCCCCHHHHH-HHHHHHCCCCCEEEEECCCC
Q ss_conf 301210470789836878078876-66663204562799844788
Q gi|255764505|r 106 LGMITRDDLIIVLSWSGSSDELKA-ILYYARRFSIPLIAITSENK 149 (341)
Q Consensus 106 lg~i~~~Dv~i~iS~SG~t~e~~~-~~~~~k~~~~~iI~iT~~~~ 149 (341)
+-.+.++|+||.-.-+....+... +++.+|.+|+++|.+--.-.
T Consensus 59 ~~~l~~gDivi~QyP~~~~~~~~~~l~~~lk~~~~K~i~~IHDie 103 (337)
T PRK09814 59 LASLNRGDIVVFQYPTYNGFEFDLLFIDKLKKKQIKIIILIHDIE 103 (337)
T ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 957799999999789870788999999999975987999977658
No 418
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=35.83 E-value=30 Score=14.82 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=66.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH-----------HHCCC-----EEECCCEEEEEECC--CCCHHH
Q ss_conf 5999933813799999999987508861101233023-----------20230-----12104707898368--780788
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEAS-----------HGDLG-----MITRDDLIIVLSWS--GSSDEL 127 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~-----------Hgdlg-----~i~~~Dv~i~iS~S--G~t~e~ 127 (341)
-++++|-+........++.. .|++-++-|..-+. -++.. -+..-++++.+-.+ -....+
T Consensus 97 ~a~~~G~~~~~~l~~~f~~~---fGt~N~~~h~~~C~~~~~~g~~~t~G~~~~~~~~pD~~na~~il~~G~~~~~~~~p~ 173 (679)
T cd02763 97 FAFFTGRDQMQALTGWFAGQ---FGTPNYAAHGGFCSVNMAAGGLYSIGGSFWEFGGPDLEHTKYFMMIGVAEDHHSNPF 173 (679)
T ss_pred EEEEECCHHHHHHHHHHHHH---HCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCEEEEECCCCCCCCCHH
T ss_conf 99993715788999999997---199832367540067888776630577776678555855989999888866567789
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 76666632045627998447889545214533768861554324752178999999999999999998503387888753
Q gi|255764505|r 128 KAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSENDFYVL 207 (341)
Q Consensus 128 ~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~df~~~ 207 (341)
...+..+|++|+++|.|-- ..|..+..||..|.+. |-|=....|++...| -..+.--++|...
T Consensus 174 ~~~l~~ak~~GaKlVvVDP-r~t~tAa~AD~WlpIr-----------PGTD~ALalam~hvI-----I~eglyD~~Fv~~ 236 (679)
T cd02763 174 KIGIQKLKRRGGKFVAVNP-VRTGYAAIADEWVPIK-----------PGTDGAFILALAHEL-----LKAGLIDWEFLKR 236 (679)
T ss_pred HHHHHHHHHCCCEEEEECC-CCCCHHHHHCCCCCCC-----------CCCHHHHHHHHHHHH-----HHCCCCCHHHHHH
T ss_conf 9999999877997999858-8872378751114778-----------996999999999999-----9788823899998
Q ss_pred HHHHH
Q ss_conf 11001
Q gi|255764505|r 208 HPGGK 212 (341)
Q Consensus 208 HPgG~ 212 (341)
|-.|.
T Consensus 237 ~Tna~ 241 (679)
T cd02763 237 YTNAA 241 (679)
T ss_pred HCCCH
T ss_conf 56836
No 419
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=35.78 E-value=23 Score=15.66 Aligned_cols=24 Identities=4% Similarity=0.030 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 788766666320456279984478
Q gi|255764505|r 125 DELKAILYYARRFSIPLIAITSEN 148 (341)
Q Consensus 125 ~e~~~~~~~~k~~~~~iI~iT~~~ 148 (341)
+...++++.+++.|..++.+|+.+
T Consensus 32 ~g~~~al~~l~~~g~~~~ivTNQs 55 (181)
T PRK08942 32 PGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCH
T ss_conf 788999999998799699995871
No 420
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=35.51 E-value=31 Score=14.78 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHH
Q ss_conf 87666663204562799844788954521453376886155432475217899999999999999999850--3387888
Q gi|255764505|r 127 LKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESR--NFSENDF 204 (341)
Q Consensus 127 ~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~--~~t~~df 204 (341)
.......+|++|+++|.|-- .-|..+..||.-|.+. |-|=....|++ +=+|++.+ |.--++|
T Consensus 192 ~~~~~~~ak~rGaKiVvVDP-R~S~tAa~ADeWlPIr-----------PGTD~AL~LAm----ihVII~E~~~g~~D~~F 255 (760)
T cd02760 192 AVTRHADARVRGYKRVQVEP-HLSVTGACSAEWVPIR-----------PKTDPAFMFAM----IHVMVHEQGLGKLDVPF 255 (760)
T ss_pred HHHHHHHHHHCCCEEEEECC-CCCHHHHHHCEECCCC-----------CCCHHHHHHHH----HHHHHHCCCCCCCCHHH
T ss_conf 99999999988998999898-7985789858045777-----------99589999999----99998446567425799
Q ss_pred HHHH
Q ss_conf 7531
Q gi|255764505|r 205 YVLH 208 (341)
Q Consensus 205 ~~~H 208 (341)
.+.|
T Consensus 256 L~~~ 259 (760)
T cd02760 256 LRDR 259 (760)
T ss_pred HHHH
T ss_conf 9742
No 421
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=35.26 E-value=31 Score=14.76 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCCCHHHHCCCCCEEECCCC-CHHHHHHHHHHCCCCEEEEEECCCEEEEEEEH
Q ss_conf 33709883488978977998-78999999996799589998069848999858
Q gi|255764505|r 281 NTLSVEDVMIKNPKVILEDT-LLTVAMQLLRQHNISVLMVVDDCQKAIGIVHF 332 (341)
Q Consensus 281 ~~~~v~~iMt~~p~~I~~d~-~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~ 332 (341)
++.|=.|+|.++|. ++|+ |+..-+-++ +|+ || |-+||+.|.
T Consensus 656 FNpPD~D~m~kpPR--~~d~sPlitgWlFf-----RYl-vi---G~YVG~ATV 697 (800)
T TIGR01116 656 FNPPDKDIMKKPPR--REDESPLITGWLFF-----RYL-VI---GVYVGLATV 697 (800)
T ss_pred CCCCCHHHHCCCCC--CCCCCCCCCHHHHH-----HHH-HH---HHHHHHHHC
T ss_conf 88788688077422--58888501226764-----456-63---203344200
No 422
>PRK04296 thymidine kinase; Provisional
Probab=35.23 E-value=31 Score=14.75 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=31.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 07898368780788766666320456279984478895
Q gi|255764505|r 114 LIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSV 151 (341)
Q Consensus 114 v~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~ 151 (341)
+.++--+||.|.|+++.+...+..|-+++.+....+..
T Consensus 6 ~i~GpMfSGKTteLi~~~~~~~~~gkkvl~~kp~~D~R 43 (197)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEERGMKVLVFTPAIDDR 43 (197)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 99934278889999999999998799599998534465
No 423
>KOG0953 consensus
Probab=35.12 E-value=31 Score=14.74 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=19.7
Q ss_pred HCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 0230121047078983687807887666663204562
Q gi|255764505|r 104 GDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIP 140 (341)
Q Consensus 104 gdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~ 140 (341)
|.+-.+.+||+++++|+ +++...-....+.|..
T Consensus 350 ~sl~nlk~GDCvV~FSk----k~I~~~k~kIE~~g~~ 382 (700)
T KOG0953 350 GSLSNLKPGDCVVAFSK----KDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHCCCCCCCEEEEEEH----HHHHHHHHHHHHHCCC
T ss_conf 02306888876999411----1488889999985585
No 424
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=34.86 E-value=32 Score=14.71 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCC----------CCCCHHHHCCC---------EE
Q ss_conf 136699999999827995999933813799999999987508861101----------23302320230---------12
Q gi|255764505|r 49 LSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFV----------HAAEASHGDLG---------MI 109 (341)
Q Consensus 49 ~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~----------~~~ea~Hgdlg---------~i 109 (341)
...++++++++|.+++--+++.|-|-++.-+ .+..-...+|.|.+.- ||. ..|-.| .+
T Consensus 187 ~~~~i~~a~~~L~~AkrPvii~G~G~~~a~~-el~~lae~l~~PV~tt~~gkg~i~~dhpl--~~G~~G~~g~~~a~~~l 263 (578)
T PRK06546 187 DPEEVRALADAINDAKKVTLFCGAGVAGAHA-EVLELAEKIKAPIGHALRGKDWIQYDNPF--DVGMSGLLGYGAAAEAM 263 (578)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHHHHHCCCEEEECCCCCCCCCCCCC--CCCCCCCCCCHHHHHHH
T ss_conf 9999999999985077988993777412799-99999998798889862334667788830--05657676868999865
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC
Q ss_conf 1047078983687807887666663204562799844788954521
Q gi|255764505|r 110 TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSVVACH 155 (341)
Q Consensus 110 ~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ 155 (341)
.+-|++|+|-.+=... .+. .+.++|-|.-++ ..+.+.
T Consensus 264 ~~aDlvl~iGt~~~~~------~~~--p~~~ii~Id~d~-~~lg~~ 300 (578)
T PRK06546 264 NDADLLILLGTDFPYN------QFL--PDVRTAQVDIAP-EHLGRR 300 (578)
T ss_pred CCCCEEEEECCCCCCC------CCC--CCCEEEEEECCH-HHHCCC
T ss_conf 1578799981688822------238--777079971887-884665
No 425
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=34.15 E-value=32 Score=14.63 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC------CCCEEEEEEECC
Q ss_conf 807887666663204562799844788954521------453376886155
Q gi|255764505|r 123 SSDELKAILYYARRFSIPLIAITSENKSVVACH------ADIVLTLPKEPE 167 (341)
Q Consensus 123 ~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~------ad~~l~~~~~~E 167 (341)
.|+.+.+++++.|+.|++= +++=||..||..+ +|.+|..+|.+=
T Consensus 91 a~~h~~R~l~~Ik~~G~~A-G~v~NP~TPl~~~~~~L~~~D~VLlMSVnPG 140 (216)
T TIGR01163 91 ATEHIHRLLQLIKELGAKA-GIVLNPATPLEALEYVLEDVDLVLLMSVNPG 140 (216)
T ss_pred CCCCHHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHCCEEEEEEEECC
T ss_conf 7626799999999718970-6886799998789989876298998876079
No 426
>KOG1399 consensus
Probab=34.04 E-value=32 Score=14.62 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=12.8
Q ss_pred CCCEEEEECCCHHH-HHHHHHHH
Q ss_conf 99599993381379-99999999
Q gi|255764505|r 64 KGRVVITGIGKSGH-IGSKLAST 85 (341)
Q Consensus 64 ~grv~~~GvG~S~~-ia~k~a~t 85 (341)
+ +|++.|+|.||. |+..++.+
T Consensus 187 k-~VlVIG~g~SG~DIs~d~~~~ 208 (448)
T KOG1399 187 K-VVLVVGCGNSGMDISLDLLRV 208 (448)
T ss_pred C-EEEEECCCCCHHHHHHHHHHH
T ss_conf 6-699988781489999999986
No 427
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.95 E-value=33 Score=14.61 Aligned_cols=68 Identities=24% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHHHHCCCCCCCC----------CCCCHHHHCCC---------EE
Q ss_conf 366999999998279959999338137999-99999987508861101----------23302320230---------12
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRVVITGIGKSGHIG-SKLASTLASTGTPSFFV----------HAAEASHGDLG---------MI 109 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv~~~GvG~S~~ia-~k~a~tl~s~G~~a~~~----------~~~ea~Hgdlg---------~i 109 (341)
...+.+++++|.+++.-+++.|-|-...=+ +.+.+-...+|.|-+.. ||. +-|-+| .+
T Consensus 208 ~~~i~~a~~lL~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl--~~G~~G~~g~~~a~~~l 285 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKK--FLGMLGMHGTYEANMAM 285 (587)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEHHHCCCCCCCCCCCC--CCCCCCCCCCHHHHHHH
T ss_conf 9999999999985689889707882043489999999999788806220457777887743--36767676879999998
Q ss_pred ECCCEEEEEE
Q ss_conf 1047078983
Q gi|255764505|r 110 TRDDLIIVLS 119 (341)
Q Consensus 110 ~~~Dv~i~iS 119 (341)
.+-|+++++=
T Consensus 286 ~~aDliL~lG 295 (587)
T PRK06965 286 QHCDVLIAIG 295 (587)
T ss_pred HCCCEEEECC
T ss_conf 5188787546
No 428
>TIGR01911 HesB_rel_seleno HesB-related (seleno)protein; InterPro: IPR010965 This entry represents a family of small proteins related to HesB and its close homologs, which are likely to be involved in iron-sulphur cluster assembly. Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain..
Probab=33.79 E-value=28 Score=15.13 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=23.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEE
Q ss_conf 59999338137999999999875088611012330232023012104707898
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVL 118 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~i 118 (341)
||.|-|.|.+| |.|++-.+|---+|= .+.-+|+-+.|
T Consensus 29 rI~f~G~g~~G---------------P~F~~~i~e~nenD~-~~~i~d~~f~I 65 (93)
T TIGR01911 29 RIYFEGFGPSG---------------PVFGIAIAEKNENDE-VVVIKDLTFLI 65 (93)
T ss_pred EEECCCCCCCC---------------CEEEEEECCCCCCCE-EEEECCEEEEE
T ss_conf 99514625899---------------755788558799974-78854427986
No 429
>KOG2305 consensus
Probab=33.78 E-value=14 Score=17.39 Aligned_cols=65 Identities=29% Similarity=0.306 Sum_probs=38.4
Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCCCCCC--------CH---------HHHCC-CEEECCCEEEEEECCCCCHHHHHHH
Q ss_conf 933813799999999987508861101233--------02---------32023-0121047078983687807887666
Q gi|255764505|r 70 TGIGKSGHIGSKLASTLASTGTPSFFVHAA--------EA---------SHGDL-GMITRDDLIIVLSWSGSSDELKAIL 131 (341)
Q Consensus 70 ~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~--------ea---------~Hgdl-g~i~~~Dv~i~iS~SG~t~e~~~~~ 131 (341)
+|+++||.++..-|..|+|.|......+-. |. -||-+ |.++.+.-+-.||..-+-+|+++-+
T Consensus 6 i~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~A 85 (313)
T KOG2305 6 IAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGA 85 (313)
T ss_pred EEEEECCCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 46762323122599998606726997623599999999999999999997210126764888888870886499998633
Q ss_pred HHH
Q ss_conf 663
Q gi|255764505|r 132 YYA 134 (341)
Q Consensus 132 ~~~ 134 (341)
-+.
T Consensus 86 i~i 88 (313)
T KOG2305 86 IHI 88 (313)
T ss_pred HHH
T ss_conf 468
No 430
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.37 E-value=33 Score=14.55 Aligned_cols=94 Identities=19% Similarity=0.120 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCC----------CCCCCHHHHCCC---------EEE
Q ss_conf 66999999998279959999338137-9999999998750886110----------123302320230---------121
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVITGIGKSG-HIGSKLASTLASTGTPSFF----------VHAAEASHGDLG---------MIT 110 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~GvG~S~-~ia~k~a~tl~s~G~~a~~----------~~~~ea~Hgdlg---------~i~ 110 (341)
.++.+++++|.+++--+++.|-|-.. ...+.+..-...+|.|-+. -||. +-|-+| .+.
T Consensus 194 ~~i~~a~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~p~~hp~--~~G~~G~~g~~~a~~~l~ 271 (574)
T PRK06466 194 GQIRKAVEMLLAAKRPVIYSGGGVILGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQ--FLGMLGMHGTYEANMAMH 271 (574)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf 999999999971799889978862512089999999998688810232146766678864--368777778899999986
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 04707898368780788766666320456279984478
Q gi|255764505|r 111 RDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSEN 148 (341)
Q Consensus 111 ~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~ 148 (341)
+-|++|++=..=.....-..-.+ ..++++|-|-.++
T Consensus 272 ~aDlvl~lG~rl~~~~t~~~~~~--~~~~~iI~Id~dp 307 (574)
T PRK06466 272 HADVILAVGARFDDRVTNGPAKF--CPNAKIIHIDIDP 307 (574)
T ss_pred CCCEEEECCCCCCCCCCCCHHHC--CCCCCEEEEECCH
T ss_conf 07965434766775345773124--9878558970898
No 431
>PRK06444 prephenate dehydrogenase; Provisional
Probab=33.28 E-value=33 Score=14.54 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 38137999999999875088611012330232023012104707898368780788766666320456279984478895
Q gi|255764505|r 72 IGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENKSV 151 (341)
Q Consensus 72 vG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~ 151 (341)
+|+-|-.++-++.-|..-|... | +.+.|+++.---=+.+.++++ +++..+|-+++-+ +|
T Consensus 6 ig~~gr~g~~~~~~~~~~g~~v---------~-----i~k~D~ifiaVPI~~~~~iI~------~~~~tiiDv~SVK-~p 64 (197)
T PRK06444 6 IGKNGRLGRVLCSILDDNGLGV---------Y-----IKKADHAFLSVPIDAALNYIE------SYDNNFVEISSVK-WP 64 (197)
T ss_pred ECCCCCHHHHHHHHHCCCCCEE---------E-----ECCCCEEEEEEEHHHHHHHHH------HCCCEEEEEEECC-CH
T ss_conf 6378716689999970378478---------9-----727888999824588899998------4797389988633-11
Q ss_pred HHHCCCCEE
Q ss_conf 452145337
Q gi|255764505|r 152 VACHADIVL 160 (341)
Q Consensus 152 la~~ad~~l 160 (341)
+.+++--.+
T Consensus 65 ~k~~~~~II 73 (197)
T PRK06444 65 FKKYSGKIV 73 (197)
T ss_pred HHHHCCCEE
T ss_conf 777079879
No 432
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=33.24 E-value=33 Score=14.53 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=32.6
Q ss_pred CCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHC--CCCEEEE
Q ss_conf 230121047078983687807887666663204562799844788-954521--4533768
Q gi|255764505|r 105 DLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK-SVVACH--ADIVLTL 162 (341)
Q Consensus 105 dlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~-S~la~~--ad~~l~~ 162 (341)
+.+.++++|.++...-+|-- =..+++.||..|+++|+.++++. -.+++. +|.++..
T Consensus 134 ~~~~~~~g~~vLi~gaaGgV--G~~avQlAk~~Ga~Vi~t~~s~~k~e~~~~lGA~~vi~~ 192 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGV--GLIACQWAKALGAKLIGTVGSAQKAQRALKAGAWQVINY 192 (327)
T ss_pred HCCCCCCCCEEEEECCCCCC--CHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEC
T ss_conf 31378999999998177611--268999999869999999898999999996699999989
No 433
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=33.16 E-value=33 Score=14.52 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHCCCCE-E---EEECCCHHHHH-------------------HHHHHHHH-HCCCCCCCCCCCCHHH-HCC
Q ss_conf 6999999998279959-9---99338137999-------------------99999987-5088611012330232-023
Q gi|255764505|r 52 QFHCAVEKIKAIKGRV-V---ITGIGKSGHIG-------------------SKLASTLA-STGTPSFFVHAAEASH-GDL 106 (341)
Q Consensus 52 ~~~~av~~i~~~~grv-~---~~GvG~S~~ia-------------------~k~a~tl~-s~G~~a~~~~~~ea~H-gdl 106 (341)
+=..|++.+.... ++ + +.|.|||...+ -|.|..|. +.|+.|..++.-+.-. .+-
T Consensus 385 EQ~~Av~hiT~~~-~Ia~VvG~AGaGKStmL~aAReawEa~GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~gr 463 (1102)
T PRK13826 385 EQKTAIEHVAGAE-RIAAVIGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIASRTLSSWELRWNQGR 463 (1102)
T ss_pred HHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999853788-668998428887889999999999977977980150078999775346953033899998743586
Q ss_pred CEEECCCEEEEEECCC--CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0121047078983687--80788766666320456279984
Q gi|255764505|r 107 GMITRDDLIIVLSWSG--SSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 107 g~i~~~Dv~i~iS~SG--~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
..+..+||+|. --.| -|+.+-++++.+.+.|+++|.+-
T Consensus 464 ~~L~~~dVlVI-DEAGMVgsrqmarvl~~ae~aGAKvVLVG 503 (1102)
T PRK13826 464 DQLDNKTVFVL-DEAGMVSSRQMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred CCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 55678738998-45556557999999999997599899968
No 434
>PRK06769 hypothetical protein; Validated
Probab=33.14 E-value=31 Score=14.78 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 788766666320456279984478
Q gi|255764505|r 125 DELKAILYYARRFSIPLIAITSEN 148 (341)
Q Consensus 125 ~e~~~~~~~~k~~~~~iI~iT~~~ 148 (341)
+...+++..+++.|..++.+|+.+
T Consensus 31 ~~~~~ai~~L~~~g~~i~vvTNQs 54 (175)
T PRK06769 31 PFTKASLQKLKAKNIKIFSFTNQP 54 (175)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 888999999998699599996882
No 435
>KOG0581 consensus
Probab=33.11 E-value=17 Score=16.71 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=10.0
Q ss_pred HHHCCCC-CCCHHHHCCCCCEE
Q ss_conf 7617823-37098834889789
Q gi|255764505|r 275 NFHKDLN-TLSVEDVMIKNPKV 295 (341)
Q Consensus 275 ~l~~~~~-~~~v~~iMt~~p~~ 295 (341)
.+.++.. .-.+.+++..+.+.
T Consensus 318 CL~Kdp~~R~s~~qLl~Hpfi~ 339 (364)
T KOG0581 318 CLRKDPSERPSAKQLLQHPFIK 339 (364)
T ss_pred HHCCCCCCCCCHHHHHCCHHHH
T ss_conf 8647942388999985498876
No 436
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=33.04 E-value=30 Score=14.87 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=14.5
Q ss_pred EEECCCEEEEEECCCCCH
Q ss_conf 121047078983687807
Q gi|255764505|r 108 MITRDDLIIVLSWSGSSD 125 (341)
Q Consensus 108 ~i~~~Dv~i~iS~SG~t~ 125 (341)
++.+.|+++.+|+.|.-+
T Consensus 499 li~~e~vvv~ls~~gyik 516 (804)
T COG0188 499 LIAEEDVVVTLSHKGYIK 516 (804)
T ss_pred HCCCCCEEEEECCCCEEE
T ss_conf 133554499981653278
No 437
>PRK05480 uridine kinase; Provisional
Probab=32.90 E-value=34 Score=14.50 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=27.3
Q ss_pred EECCCEEEEE---ECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 2104707898---3687807887666663204562799844
Q gi|255764505|r 109 ITRDDLIIVL---SWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 109 i~~~Dv~i~i---S~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
+.+.-++|+| |.||.|.-.-.+.+.+...++.+|..-+
T Consensus 2 ~~k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~~D~ 42 (209)
T PRK05480 2 MMKQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVISQDS 42 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 98898899998999778999999999980868759995544
No 438
>PRK05858 hypothetical protein; Provisional
Probab=32.83 E-value=34 Score=14.49 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-HHCCCCCCCC----------CCCCHHHHCCCEEECCCEEEE
Q ss_conf 13669999999982799599993381379999999998-7508861101----------233023202301210470789
Q gi|255764505|r 49 LSFQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTL-ASTGTPSFFV----------HAAEASHGDLGMITRDDLIIV 117 (341)
Q Consensus 49 ~~~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl-~s~G~~a~~~----------~~~ea~Hgdlg~i~~~Dv~i~ 117 (341)
..+.+.+++++|.+++.-+++.|-|-...-+.+....| ..+|.|.+.- ||.-.....--.+.+-|++|+
T Consensus 191 ~~~~i~~a~~~L~~AkrPvii~G~gv~~~~a~~~l~~lae~lg~Pv~tt~~gkg~~p~~hpl~~~~~~~~~l~~aDlil~ 270 (543)
T PRK05858 191 DGDALDRAAGLLSTAQRPVIMAGTNVWWGHAEAALLRLAEELHIPVLMNGMARGVVPADHPLAFSRARSKALGEADVALV 270 (543)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999982799789968642233339999999998699778755557768887704565789988556998999
Q ss_pred EEC
Q ss_conf 836
Q gi|255764505|r 118 LSW 120 (341)
Q Consensus 118 iS~ 120 (341)
+-.
T Consensus 271 iG~ 273 (543)
T PRK05858 271 VGV 273 (543)
T ss_pred ECC
T ss_conf 657
No 439
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=32.80 E-value=34 Score=14.48 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCEEEEEHHHHH----HHHHHHHCCCCCEEEECCCCCEEEEEEECCC-HHHHHHCCCCCCCHHHHCCCCCEEECCCC--
Q ss_conf 5430551002388----8898741046620000004323232412340-35676178233709883488978977998--
Q gi|255764505|r 228 DSIPLVKIGCPLI----DAITILSEKRFGCVAVVDEGQKLKGIITEGD-IFRNFHKDLNTLSVEDVMIKNPKVILEDT-- 300 (341)
Q Consensus 228 ~~ip~V~~~~si~----eal~~m~~~~~g~v~Vvd~~~~liGIITdgD-lrR~l~~~~~~~~v~~iMt~~p~~I~~d~-- 300 (341)
++.|++.-++++. +.+..+++.--+.+.|+.++ | ..|.-+ |++.+.+..- |-+.|.|+.
T Consensus 292 ~~YPI~sIEDpl~E~D~~gw~~lt~~lg~~~~iVGDD--L--~vTn~~rl~~gi~~~~~----------naiLIK~NQiG 357 (442)
T PTZ00081 292 AKYPIVSIEDPFDQDDWEEYAKITEALGGKVQIVGDD--L--LVTNPKRIKTALEKKAC----------NALLLKVNQIG 357 (442)
T ss_pred HHCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCC--C--CCCCHHHHHHHHHCCCC----------CEEEEECCCCC
T ss_conf 3098789958988467999999999709988998976--5--57689999999854877----------63898332322
Q ss_pred CHHHHHHHH---HHCCCCEEEEE
Q ss_conf 789999999---96799589998
Q gi|255764505|r 301 LLTVAMQLL---RQHNISVLMVV 320 (341)
Q Consensus 301 ~i~eAl~lM---~~~kI~~LpVV 320 (341)
++.|+++.+ .+++ ..+||
T Consensus 358 Tlset~eai~~A~~~g--~~~iv 378 (442)
T PTZ00081 358 SITEAIEACKLCMKNG--WGVMV 378 (442)
T ss_pred HHHHHHHHHHHHHHCC--CEEEE
T ss_conf 0999999999999879--87999
No 440
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=32.43 E-value=16 Score=16.84 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEE----EECCCH---HHHHHH-------HHHHHHH--------CCCCCCCCC--CCCHH
Q ss_conf 136699999999827995999----933813---799999-------9999875--------088611012--33023
Q gi|255764505|r 49 LSFQFHCAVEKIKAIKGRVVI----TGIGKS---GHIGSK-------LASTLAS--------TGTPSFFVH--AAEAS 102 (341)
Q Consensus 49 ~~~~~~~av~~i~~~~grv~~----~GvG~S---~~ia~k-------~a~tl~s--------~G~~a~~~~--~~ea~ 102 (341)
...+|.+-|. .|-|++ +|||+| +.+|-| +|-.|++ .|.|...+. ++|+.
T Consensus 38 ~~PeF~~kvr-----~GDviVAGkNFGcGSSREQA~~ALK~aGv~aviA~SFARIFYRNAIN~GLP~i~~~e~vte~~ 110 (159)
T TIGR02087 38 IDPEFAKKVR-----EGDVIVAGKNFGCGSSREQAALALKAAGVAAVIAESFARIFYRNAINIGLPLIEAKEDVTELI 110 (159)
T ss_pred CCCCHHHHCC-----CCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHCCCCEEEECCCCEEEE
T ss_conf 9963134078-----997887141647788778899999747904898520166010323332520263168965021
No 441
>PRK08118 topology modulation protein; Reviewed
Probab=32.27 E-value=35 Score=14.42 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=46.1
Q ss_pred CEEEEECCCHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 599993381379--999999998750886110123302320230121047078983687807887666663204562799
Q gi|255764505|r 66 RVVITGIGKSGH--IGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 66 rv~~~GvG~S~~--ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~ 143 (341)
||.++|..+||- .|++++.. +|+|.+.++.- .| .++=. .=...|..+.++.+-+...=|
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~---~~ip~~~LD~l--~w------~~~w~------~~~~~e~~~~~~~~~~~~~WI-- 63 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK---LNIPVHHLDAL--FW------KPNWE------GVPKEEQRTVQNELVKEDEWI-- 63 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---HCCCEEECCCE--EE------CCCCC------CCCHHHHHHHHHHHHHCCCEE--
T ss_conf 7999889998799999999998---89697964434--76------68994------688899999999998389879--
Q ss_pred EECCCCCHHH---HCCCCEEEEEEECCCCCC
Q ss_conf 8447889545---214533768861554324
Q gi|255764505|r 144 ITSENKSVVA---CHADIVLTLPKEPESCPH 171 (341)
Q Consensus 144 iT~~~~S~la---~~ad~~l~~~~~~Ea~~~ 171 (341)
|-+|-.+++. ..||..+.+..+...|-+
T Consensus 64 idGny~~~~~~r~~~aD~iI~Ld~p~~~~~~ 94 (167)
T PRK08118 64 IDGNYGGTMDIRLNAADTIIFLDIPRTICLY 94 (167)
T ss_pred EECCCHHHHHHHHHHCCEEEEECCCHHHHHH
T ss_conf 9477177998779769999998598999999
No 442
>KOG1368 consensus
Probab=32.26 E-value=21 Score=16.00 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCC-------CCHHHH------HHHHHHHHHHHHH-HHHHHHHCCCCCCEEEEEHHHHHHHHHHHHC
Q ss_conf 99999999998503-------387888------7531100111124-3333321047543055100238888987410
Q gi|255764505|r 185 IGDALAIALLESRN-------FSENDF------YVLHPGGKLGTLF-VCASDVMHSGDSIPLVKIGCPLIDAITILSE 248 (341)
Q Consensus 185 ~~Dalav~l~~~~~-------~t~~df------~~~HPgG~lg~~L-l~V~DiM~~~~~ip~V~~~~si~eal~~m~~ 248 (341)
..|.+.++|++--| .-+.+| .+.--||.+.+.= +-..-+---.+++|.+..+......+..+-+
T Consensus 215 ~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~ 292 (384)
T KOG1368 215 AFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYIN 292 (384)
T ss_pred HHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 632424355355788740178752889999899999756861377799998898763122777877999999999864
No 443
>PRK08727 hypothetical protein; Validated
Probab=32.00 E-value=35 Score=14.39 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=64.1
Q ss_pred CEEEE---ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH-------HH--CCCEEECCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 59999---33813799999999987508861101233023-------20--23012104707898368780788766666
Q gi|255764505|r 66 RVVIT---GIGKSGHIGSKLASTLASTGTPSFFVHAAEAS-------HG--DLGMITRDDLIIVLSWSGSSDELKAILYY 133 (341)
Q Consensus 66 rv~~~---GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~-------Hg--dlg~i~~~Dv~i~iS~SG~t~e~~~~~~~ 133 (341)
-++++ |.|||.+ ++-.++.....|..+.|+...++. -+ ....+.=+|+=....+...-..+-.+...
T Consensus 43 ~lyl~G~~GsGKTHL-l~a~~~~~~~~~~~~~yl~l~~~~~~~~~~l~~le~~~ll~iDDid~i~g~~~~e~aLFhL~N~ 121 (233)
T PRK08727 43 WLYLSGPAGTGKTHL-ALSLCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGVDSIAGQREDEVALFDFHNR 121 (233)
T ss_pred EEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHHHHHHHHHHH
T ss_conf 899989999988999-9999999982799728844788532025677531038978985501126982799999999999
Q ss_pred HHCCCCCEEEEECCCCCHH--H-HCCCCEEEEEEECCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCHHH----HH
Q ss_conf 3204562799844788954--5-214533768861554324752-17899999999999999999850338788----87
Q gi|255764505|r 134 ARRFSIPLIAITSENKSVV--A-CHADIVLTLPKEPESCPHGLA-PTTSAIMQLAIGDALAIALLESRNFSEND----FY 205 (341)
Q Consensus 134 ~k~~~~~iI~iT~~~~S~l--a-~~ad~~l~~~~~~Ea~~~~~a-Pt~Stt~~l~~~Dalav~l~~~~~~t~~d----f~ 205 (341)
+++.|.+++ +|++. +|- . ...|..=.+. -+-.+.+- |+-... -++....+..|||...+ |-
T Consensus 122 ~~~~~~~ll-~ts~~-~P~~l~~~l~DL~SRL~---~~~~~~l~~~dD~~~------~~iL~~~a~~rgl~l~~~V~~Yl 190 (233)
T PRK08727 122 ARAAGITLL-YTARQ-MPDGLALVLPDLRSRLS---QCIRIGLPVLDDVAR------AAVLRDRAQRRGLALDEAAIDWL 190 (233)
T ss_pred HHHCCCEEE-EECCC-CHHHHCCCHHHHHHHHH---CCCEEEECCCCHHHH------HHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 986198389-97798-95662310021999996---692288578897999------99999999986999998999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 53110011112
Q gi|255764505|r 206 VLHPGGKLGTL 216 (341)
Q Consensus 206 ~~HPgG~lg~~ 216 (341)
..|=.=++...
T Consensus 191 l~r~~R~~~~l 201 (233)
T PRK08727 191 LTHGERELAGL 201 (233)
T ss_pred HHHCCCCHHHH
T ss_conf 98568899999
No 444
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit; InterPro: IPR012792 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the CoA-binding A subunit of family I CoA-transferases. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is an all parallel beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=31.99 E-value=35 Score=14.39 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHH
Q ss_conf 69999999982799599993381379999999998750886110123302320230121047078983687807887666
Q gi|255764505|r 52 QFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAIL 131 (341)
Q Consensus 52 ~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~ 131 (341)
...+|++.|.+-. .|.+.|.|.+| . |.|.+|+ |=-...+|+-|.=-|.|+-+- -+.
T Consensus 8 ~~~ea~~~i~dGa-Ti~igGFG~~G--------------~------P~eLi~a-Li~~g~k~LTivsNNAG~G~~--GLa 63 (222)
T TIGR02429 8 SAAEAVSEIEDGA-TILIGGFGTAG--------------L------PEELIDA-LIETGAKDLTIVSNNAGNGEI--GLA 63 (222)
T ss_pred HHHHHHHHCCCCC-EEEEECCCCCC--------------C------HHHHHHH-HHHHCCCCCEEEECCCCCCHH--HHH
T ss_conf 9999985158986-69862779888--------------7------5899999-997067777788637788036--899
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHC
Q ss_conf 663204562799844788954521
Q gi|255764505|r 132 YYARRFSIPLIAITSENKSVVACH 155 (341)
Q Consensus 132 ~~~k~~~~~iI~iT~~~~S~la~~ 155 (341)
+.++...++=+ |+|.|.+.=+..
T Consensus 64 ~Ll~ag~V~kl-icSFP~~~ds~~ 86 (222)
T TIGR02429 64 ALLKAGQVRKL-ICSFPRQSDSYV 86 (222)
T ss_pred HHHHCCCEEEE-EEECCCCCCCHH
T ss_conf 99834970278-863688998235
No 445
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=31.98 E-value=35 Score=14.39 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCCEEEEEHHHHH----HHHHHHHCCCCCEEEECCCCCEEEEEEECCC-HHHHHHCCCCCCCHHHHCCCCCEEECCCC--
Q ss_conf 5430551002388----8898741046620000004323232412340-35676178233709883488978977998--
Q gi|255764505|r 228 DSIPLVKIGCPLI----DAITILSEKRFGCVAVVDEGQKLKGIITEGD-IFRNFHKDLNTLSVEDVMIKNPKVILEDT-- 300 (341)
Q Consensus 228 ~~ip~V~~~~si~----eal~~m~~~~~g~v~Vvd~~~~liGIITdgD-lrR~l~~~~~~~~v~~iMt~~p~~I~~d~-- 300 (341)
++.|++.-++++. +.+..+++.--.-+.|+.++ | .+|.-+ |+|.+.+..- |-+.+.++.
T Consensus 277 ~~YPI~sIEDp~~EdD~~gw~~lt~~lg~k~~iVGDD--L--~vTn~~rl~kgi~~~~~----------NaiLiK~NQiG 342 (427)
T PRK00077 277 DKYPIVSIEDGLDENDWDGWALLTERLGDKVQLVGDD--L--FVTNPKILKEGIEKGAA----------NSILIKVNQIG 342 (427)
T ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCC--C--CCCCHHHHHHHHHCCCC----------CEEEEECCCCC
T ss_conf 8799778746888226899999999709967998884--1--34688999725540766----------47998443467
Q ss_pred CHHHHHHHH---HHCCCCEEEEEE-CCCEE
Q ss_conf 789999999---967995899980-69848
Q gi|255764505|r 301 LLTVAMQLL---RQHNISVLMVVD-DCQKA 326 (341)
Q Consensus 301 ~i~eAl~lM---~~~kI~~LpVVD-~~~~l 326 (341)
++.|+++.+ .+++ ..+||. ..|+.
T Consensus 343 Tvset~eai~la~~~g--~~~ivShRSGET 370 (427)
T PRK00077 343 TLTETLEAIELAKRAG--YTAVISHRSGET 370 (427)
T ss_pred CHHHHHHHHHHHHHCC--CEEEEECCCCCC
T ss_conf 3999999999999869--879997898986
No 446
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=31.86 E-value=20 Score=16.08 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=20.7
Q ss_pred CCHHHH-------HHHHHHHHHHCCCCCCCCCCC
Q ss_conf 813799-------999999987508861101233
Q gi|255764505|r 73 GKSGHI-------GSKLASTLASTGTPSFFVHAA 99 (341)
Q Consensus 73 G~S~~i-------a~k~a~tl~s~G~~a~~~~~~ 99 (341)
|+||+| -+++++.|.|-|++|...||+
T Consensus 226 G~SGIIYa~sR~~VE~~~~~L~s~G~~A~~YHAG 259 (607)
T TIGR01389 226 GQSGIIYASSRKKVEELAERLESQGISALAYHAG 259 (607)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 9534787677045899999997479620403679
No 447
>TIGR01694 MTAP methylthioadenosine phosphorylase; InterPro: IPR010044 This entry represents the methylthioadenosine phosphorylase found in metazoa, cyanobacteria and a limited number of archaea such as Sulfolobus, Aeropyrum, Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme is responsible for the first step in the methionine salvage pathway after the transfer of the amino acid moiety from S-adenosylmethionine. The enzyme from human is well-characterised and its crystal structure has been described , . A misleading characterisation is found for a Sulfolobus solfataricus enzyme which is called a MTAP. In fact, as uncovered by the genome sequence of S. solfataricus, there are at least two nucleotide phosphorylases and the one found in the MTAP clade is not the one annotated as such. The sequence in this clade has not been isolated but is likely to be the authentic SsMTAP as it displays all of the conserved active site residues found in the human enzyme . This explains the finding that the characterised enzyme has greater efficiency towards the purines inosine, guanosine and adenosine over MTA. In fact, this misnaming of this enzyme has been carried forward to several publications including a crystal structure . Related sequences include: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilise the MTA/SAH nucleotidase enzyme and a kinase to do this reaction; and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbour-joining trees) and lacks some of the conserved active site residues. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=31.86 E-value=15 Score=17.17 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=49.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHCCC
Q ss_conf 999999987508861101233023202301210470789836878078876666632045-6279984478895452145
Q gi|255764505|r 79 GSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRFS-IPLIAITSENKSVVACHAD 157 (341)
Q Consensus 79 a~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~-~~iI~iT~~~~S~la~~ad 157 (341)
+++|-+.|.+.+-....--+++ .+....++-++.+.--|=--|+..=....|+.| +.+|++|+-|.-.||+.++
T Consensus 141 c~~Lr~~L~~~~~~l~~~v~~~-----~~t~~~~G~~~yvc~eGPRFsT~AEs~~~~~~Gk~~~vGMT~~PEa~LAREle 215 (263)
T TIGR01694 141 CEDLRQVLIEALRRLGLFVAAE-----KVTVHDGGDLTYVCTEGPRFSTRAESRLFKSWGKADVVGMTGLPEAVLARELE 215 (263)
T ss_pred CHHHHHHHHHHHHHHCHHHCCC-----CCCEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHC
T ss_conf 8768999998887401001157-----65278758789998316876738999999981287575265268999987405
Q ss_pred CE
Q ss_conf 33
Q gi|255764505|r 158 IV 159 (341)
Q Consensus 158 ~~ 159 (341)
++
T Consensus 216 l~ 217 (263)
T TIGR01694 216 LC 217 (263)
T ss_pred HH
T ss_conf 56
No 448
>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated
Probab=31.38 E-value=24 Score=15.56 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.4
Q ss_pred EEECCCEEEEEECCCCCHHHH
Q ss_conf 121047078983687807887
Q gi|255764505|r 108 MITRDDLIIVLSWSGSSDELK 128 (341)
Q Consensus 108 ~i~~~Dv~i~iS~SG~t~e~~ 128 (341)
+|.+.|++|.+|+.|.-+-+-
T Consensus 513 LI~~EdvVVtlS~~GYIKR~p 533 (959)
T PRK13979 513 LIVVEDVVITLSNEGFIKRIP 533 (959)
T ss_pred HCCCCCEEEEEECCCEEEECC
T ss_conf 345665599980696475045
No 449
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=31.31 E-value=36 Score=14.32 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=70.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCCCCCC--CCCHHHHC-------------CCEEECCCEEEEEECCCCCHHHHHHH
Q ss_conf 9999338137999999999875088611012--33023202-------------30121047078983687807887666
Q gi|255764505|r 67 VVITGIGKSGHIGSKLASTLASTGTPSFFVH--AAEASHGD-------------LGMITRDDLIIVLSWSGSSDELKAIL 131 (341)
Q Consensus 67 v~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~--~~ea~Hgd-------------lg~i~~~Dv~i~iS~SG~t~e~~~~~ 131 (341)
+-+.=+|..|.|++.+-..|..-..|.+-+. +++-+-|. +--....++=++++..|. ....+..
T Consensus 5 ~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~~SaGk~i~~~~~~~~v~~~~~~~~~~~di~ff~a~~-~~s~~~~ 83 (337)
T PRK08040 5 WNIALLGATGAVGEALLETLAERQFPVGEIYALAREESAGETLRFGGKSITVQDAAEFDWTQAQLAFFVAGK-EASAAYA 83 (337)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCC-HHHHHHH
T ss_conf 879998885088999999997179981359999888889977778991889997770332469889991771-7888889
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEEC-CC----CCCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 66320456279984478895452145337688615-54----32475--2178999999999999999998503387888
Q gi|255764505|r 132 YYARRFSIPLIAITSENKSVVACHADIVLTLPKEP-ES----CPHGL--APTTSAIMQLAIGDALAIALLESRNFSENDF 204 (341)
Q Consensus 132 ~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~-Ea----~~~~~--aPt~Stt~~l~~~Dalav~l~~~~~~t~~df 204 (341)
+.+.+.|+.+|.- .|...-..|+.|.+|-.. |. ...++ -|..||+..++-.. .|.+.-|+.+-..
T Consensus 84 ~~a~~aG~~VIDn----ss~~Rm~~dVPLvvPeVN~~~l~~~~~~~IianPNCsT~~l~~aL~----pL~~~~gi~rv~v 155 (337)
T PRK08040 84 EEATNAGCLVIDS----SGLFALEPDVPLVVPEVNPFVLADYRNRNVIAVADSLTSQLLAALK----PLIDQGGLSRISV 155 (337)
T ss_pred HHHHHCCCEEEEC----CHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHH----HHHHHCCEEEEEE
T ss_conf 9998489599979----6131058887421674087888743249825457708888898778----8886306458999
Q ss_pred HHHHHH
Q ss_conf 753110
Q gi|255764505|r 205 YVLHPG 210 (341)
Q Consensus 205 ~~~HPg 210 (341)
..+.+-
T Consensus 156 sTyQAv 161 (337)
T PRK08040 156 TNLISA 161 (337)
T ss_pred EEEEEC
T ss_conf 986404
No 450
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=31.18 E-value=36 Score=14.30 Aligned_cols=109 Identities=7% Similarity=0.039 Sum_probs=53.1
Q ss_pred HHHCCHHHHHHHHHHHHHCC------CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEE
Q ss_conf 20011366999999998279------959999338137999999999875088611012330232023012104707898
Q gi|255764505|r 45 LQGELSFQFHCAVEKIKAIK------GRVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVL 118 (341)
Q Consensus 45 l~~~~~~~~~~av~~i~~~~------grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~i 118 (341)
+.+.....+.++....++.+ -.=++.|.|.+..+.. +..+|..-|-......|+-..+..+-.+....++-.-
T Consensus 62 YPd~~~~~Lr~alA~~l~~~~~~gv~~e~Ii~gnGSdE~i~~-i~~af~~pGd~vl~~~Ptf~~Y~~~a~~~g~~~v~v~ 140 (369)
T PRK03317 62 YPDRDAVALRTDLAAYLTAQTGVGLGVENVWAANGSNEILQQ-LLQAFGGPGRSALGFVPSYSMHPIIARGTHTEWVAAP 140 (369)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHEEECCCHHHHHHH-HHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 899748999999998750302679787787882689999999-9999828999899747860279999987097799936
Q ss_pred ECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHC
Q ss_conf 3687807887666663204562799844788954521
Q gi|255764505|r 119 SWSGSSDELKAILYYARRFSIPLIAITSENKSVVACH 155 (341)
Q Consensus 119 S~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ 155 (341)
...+-+-++-.+++.+++++.++|-+ +|||+|-+..
T Consensus 141 ~~~df~~d~d~l~~ai~~~~~klv~l-~nPNNPTG~~ 176 (369)
T PRK03317 141 RAADFGLDVDAAVAAIREHRPDVVFL-TSPNNPTGTA 176 (369)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEE-CCCCCCCCEE
T ss_conf 78788839999999863269858997-5899987712
No 451
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=31.14 E-value=36 Score=14.30 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=50.7
Q ss_pred CCCEEEEE-ECCCCCH-HHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 04707898-3687807-887666663204562799844788954521453376886155432475217899999999999
Q gi|255764505|r 111 RDDLIIVL-SWSGSSD-ELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDA 188 (341)
Q Consensus 111 ~~Dv~i~i-S~SG~t~-e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Da 188 (341)
.-|++|++ +|-.++. .....+..+|++|+++|.|-- ..|..++.||..|.+. |-|-....+++...
T Consensus 159 ~a~~il~~G~Np~~~~~~~~~~~~~ak~~G~klIvIDP-r~t~ta~~AD~~l~ir-----------PGTD~AL~lam~~~ 226 (567)
T cd02765 159 NAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDP-VYSTTAAKADQWVPIR-----------PGTDPALALGMINY 226 (567)
T ss_pred HCCEEEEECCCCHHHCCCHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHCCCC-----------CCCHHHHHHHHHHH
T ss_conf 39899999988246361079999999866983999938-5260899864543789-----------99589999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999985033878887531100
Q gi|255764505|r 189 LAIALLESRNFSENDFYVLHPGG 211 (341)
Q Consensus 189 lav~l~~~~~~t~~df~~~HPgG 211 (341)
| -..++--++|...|=.|
T Consensus 227 i-----i~e~l~D~~Fi~~~t~~ 244 (567)
T cd02765 227 I-----LEHNWYDEAFLKSNTSA 244 (567)
T ss_pred H-----HHCCCCCHHHHHHHCCC
T ss_conf 9-----98798378999984661
No 452
>KOG4238 consensus
Probab=30.74 E-value=37 Score=14.25 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=46.2
Q ss_pred CEEEEECCCHHH--HHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCC-CCCEE
Q ss_conf 599993381379--999999998750886110123302320230121047078983687807887666663204-56279
Q gi|255764505|r 66 RVVITGIGKSGH--IGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILYYARRF-SIPLI 142 (341)
Q Consensus 66 rv~~~GvG~S~~--ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~-~~~iI 142 (341)
.|-|+|.-+.|- |.--+-.+|.+.|+|++-++.-+--|| +.++ +.+|.--+-+.+-++++.||-. .+-.|
T Consensus 52 tvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhg----l~kn---lgfs~edreenirriaevaklfadaglv 124 (627)
T KOG4238 52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHG----LNKN---LGFSPEDREENIRRIAEVAKLFADAGLV 124 (627)
T ss_pred EEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHH----HHHC---CCCCHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 58743047788524207899999865985103476026665----5412---6988355788899999999987357714
Q ss_pred EEECCCCCHHHH
Q ss_conf 984478895452
Q gi|255764505|r 143 AITSENKSVVAC 154 (341)
Q Consensus 143 ~iT~~~~S~la~ 154 (341)
.||+. -||.++
T Consensus 125 citsf-ispf~~ 135 (627)
T KOG4238 125 CITSF-ISPFAK 135 (627)
T ss_pred EHHHH-CCHHHH
T ss_conf 21033-483443
No 453
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=30.71 E-value=37 Score=14.25 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=42.6
Q ss_pred EECCCEEEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 21047078983687807887666663204562-799844788954521453376886155432475217899999999
Q gi|255764505|r 109 ITRDDLIIVLSWSGSSDELKAILYYARRFSIP-LIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAI 185 (341)
Q Consensus 109 i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~-iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~ 185 (341)
+.+-||+|=+|..-.+.+.+ +.|.+++++ +||-|+..+..+.+.-...-.+ |.=++|..|.-+.|..
T Consensus 67 ~~~~DVvIDFS~p~~~~~~~---~~~~~~~~~~ViGTTG~~~~~~~~i~~~s~~i-------pil~apNfSlGvnll~ 134 (265)
T PRK00048 67 LDDFDVLIDFTTPEATLENL---EFALEHGKPLVIGTTGFTEEQLAALREAAKKI-------PVVIAPNFSVGVNLLM 134 (265)
T ss_pred HCCCCEEEECCCHHHHHHHH---HHHHHCCCCEEEEECCCCHHHHHHHHHHCCCC-------CEEEECCHHHHHHHHH
T ss_conf 05599899899889999999---99997499779960899989999999746588-------7899785589999999
No 454
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=30.62 E-value=37 Score=14.24 Aligned_cols=57 Identities=35% Similarity=0.543 Sum_probs=36.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHHHHHHH-HHHCCCCCEE
Q ss_conf 5999933813799999999987508861101233023202301210470789836878078876666-6320456279
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDELKAILY-YARRFSIPLI 142 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~~~~~~-~~k~~~~~iI 142 (341)
||++.| .|.++-.+|..|+..|.....++ ..|-+. +...+++.+.+. .++++|+++.
T Consensus 1 rv~iiG---gG~ig~E~A~~l~~~G~~Vtiie-------------~~~~~l----~~~d~~~~~~~~~~l~~~GV~i~ 58 (82)
T pfam00070 1 RVVVVG---GGYIGLEFASALAKLGSKVTVVE-------------RRDRLL----RGFDEEIAKILQEKLEKNGIEVL 58 (82)
T ss_pred CEEEEC---CCHHHHHHHHHHHHCCCEEEEEC-------------CCCCCC----HHCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999999---88999999999986392789981-------------257330----22798899999999986699997
No 455
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=30.37 E-value=37 Score=14.21 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 7078983687807887666663204562799
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIA 143 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~ 143 (341)
.+++.|+.-=--.+.+++.+++|+++.++|+
T Consensus 91 ~~iV~ITEgiP~~D~~~i~~~a~~~g~riIG 121 (289)
T PRK05678 91 DLIVCITEGIPVLDMLEVKRYLKGKKTRLIG 121 (289)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 8899943899788899999987307988988
No 456
>PRK06940 short chain dehydrogenase; Provisional
Probab=30.23 E-value=37 Score=14.19 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=16.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 995999933813799999999987
Q gi|255764505|r 64 KGRVVITGIGKSGHIGSKLASTLA 87 (341)
Q Consensus 64 ~grv~~~GvG~S~~ia~k~a~tl~ 87 (341)
++||+++| |.|| |++-+|..|+
T Consensus 4 ~~kV~v~t-Ga~G-IG~aiA~~la 25 (277)
T PRK06940 4 SKEVVVVI-GAGG-MGQAIARRVG 25 (277)
T ss_pred CCCEEEEC-CCCH-HHHHHHHHHH
T ss_conf 99299997-8169-9999999998
No 457
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.16 E-value=37 Score=14.18 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHHHHCCCCCCCC------CCCC--HHHHCCC---------EEECC
Q ss_conf 669999999982799599993381379-9999999987508861101------2330--2320230---------12104
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVITGIGKSGH-IGSKLASTLASTGTPSFFV------HAAE--ASHGDLG---------MITRD 112 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~GvG~S~~-ia~k~a~tl~s~G~~a~~~------~~~e--a~Hgdlg---------~i~~~ 112 (341)
..+.+++++|.+++..+++.|-|-... ..+.+..--..+|.|-+.- .|.+ .+-|-+| .+.+-
T Consensus 194 ~~i~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~lg~PV~tt~~gkg~~p~~hp~~~G~~G~~~~~~a~~~l~~a 273 (574)
T PRK06882 194 GQIKKALKALLVAKKPVLFIGGGVITAECSEQLTQFAQRLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHES 273 (574)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 99999999998379988997874344248999999998609871312035777777776567877777888999743367
Q ss_pred CEEEEEEC
Q ss_conf 70789836
Q gi|255764505|r 113 DLIIVLSW 120 (341)
Q Consensus 113 Dv~i~iS~ 120 (341)
|++|++-.
T Consensus 274 Dlvl~lG~ 281 (574)
T PRK06882 274 DLILGIGV 281 (574)
T ss_pred CEEEEECC
T ss_conf 73998168
No 458
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=30.10 E-value=37 Score=14.18 Aligned_cols=65 Identities=28% Similarity=0.444 Sum_probs=39.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCCCHHH---------HHHHHHHHC
Q ss_conf 59999338137999999999875088611012330232023012104707898368780788---------766666320
Q gi|255764505|r 66 RVVITGIGKSGHIGSKLASTLASTGTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGSSDEL---------KAILYYARR 136 (341)
Q Consensus 66 rv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~t~e~---------~~~~~~~k~ 136 (341)
+|++.|-|-||++| |..|...|..-.++.+-+-.= +-+.-+.+ +|+-.+. -..+.++|+
T Consensus 9 ~viivGaGlaGL~A---A~eL~kaG~~v~ilEar~r~G--------GR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~ 76 (450)
T COG1231 9 DVIIVGAGLAGLSA---AYELKKAGYQVQILEARDRVG--------GRSLTARA-GGEYTDLGGQYINPTHDALLAYAKE 76 (450)
T ss_pred CEEEECCCHHHHHH---HHHHHHCCCEEEEEECCCCCC--------CEEEEEEC-CCEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 68998972688899---998764681899986467767--------64677750-5523135874037660555556776
Q ss_pred CCCCEE
Q ss_conf 456279
Q gi|255764505|r 137 FSIPLI 142 (341)
Q Consensus 137 ~~~~iI 142 (341)
+|++.-
T Consensus 77 ~gv~~~ 82 (450)
T COG1231 77 FGVPLE 82 (450)
T ss_pred CCCCCC
T ss_conf 098777
No 459
>PRK09271 flavodoxin; Provisional
Probab=30.10 E-value=37 Score=14.17 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=13.2
Q ss_pred EEEEECCCCCHHHHHHHHHH-HCCCCCE
Q ss_conf 78983687807887666663-2045627
Q gi|255764505|r 115 IIVLSWSGSSDELKAILYYA-RRFSIPL 141 (341)
Q Consensus 115 ~i~iS~SG~t~e~~~~~~~~-k~~~~~i 141 (341)
++.-|-||||+++-+++... ++.|..+
T Consensus 5 IvYaS~TGNTE~vA~~I~~~l~~~G~eV 32 (160)
T PRK09271 5 LAYASLSGNTREVARMIAARCEEAGHAV 32 (160)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 9998488768999999999999769823
No 460
>PRK13018 cell division protein FtsZ; Provisional
Probab=30.10 E-value=37 Score=14.17 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=52.3
Q ss_pred EECCCEEEEEE------CCCCCHHHHHHHHHHHCCCCCEEEEECCCCC---------------HHHHCCCCEEEEEEECC
Q ss_conf 21047078983------6878078876666632045627998447889---------------54521453376886155
Q gi|255764505|r 109 ITRDDLIIVLS------WSGSSDELKAILYYARRFSIPLIAITSENKS---------------VVACHADIVLTLPKEPE 167 (341)
Q Consensus 109 i~~~Dv~i~iS------~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S---------------~la~~ad~~l~~~~~~E 167 (341)
+.--|+||... -+|-++.+ ++.||+.|+-+|++...|=+ .|.+++|-.|.+|-.+=
T Consensus 109 l~g~DmVFItAGmGGGTGTGAAPVI---A~iAke~GaLtVavVT~PF~fEG~~R~~~A~~Gl~~L~~~vDtlIvIpNdkL 185 (387)
T PRK13018 109 LKGADLVFVTAGMGGGTGTGAAPVV---AEIAKEQGALVIGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRL 185 (387)
T ss_pred HCCCCEEEEEECCCCCCCCCHHHHH---HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHH
T ss_conf 7589869999534785137778999---9999981993999944895777689999999999999986996999732899
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4324752178999999999999
Q gi|255764505|r 168 SCPHGLAPTTSAIMQLAIGDAL 189 (341)
Q Consensus 168 a~~~~~aPt~Stt~~l~~~Dal 189 (341)
+.++|.++..-.+.+.|-+
T Consensus 186 ---~~~~~~~~~~~AF~~aD~v 204 (387)
T PRK13018 186 ---LDIVPNLPIADAFSVADEV 204 (387)
T ss_pred ---HHHHCCCCHHHHHHHHHHH
T ss_conf ---9987069799999999999
No 461
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=30.04 E-value=37 Score=14.17 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCHHHHHHC
Q ss_conf 8888987410466200000043232324123403567617
Q gi|255764505|r 239 LIDAITILSEKRFGCVAVVDEGQKLKGIITEGDIFRNFHK 278 (341)
Q Consensus 239 i~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDlrR~l~~ 278 (341)
..+....+....+-.-.=++++|+|.|-||..|+...+.+
T Consensus 65 a~~~~~~L~~~~l~i~~k~~~~gkLfGSVt~~~I~~~l~~ 104 (147)
T PRK00137 65 AEALAEKLEGLTVTIAAKAGEDGKLFGSVTTKDIAEALKA 104 (147)
T ss_pred HHHHHHHHHCCEEEEEEEECCCCEEECCCCHHHHHHHHHH
T ss_conf 9999998609869999970667705055588999999997
No 462
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.91 E-value=38 Score=14.15 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=26.6
Q ss_pred HCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCC
Q ss_conf 104754305510023888898741046620000004
Q gi|255764505|r 224 MHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDE 259 (341)
Q Consensus 224 M~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~ 259 (341)
|..++-+-.|..+..-+++++.+.+.+...++|.++
T Consensus 201 ~~~kdH~IICGyG~~g~~v~~eL~~~g~~vVVI~~~ 236 (356)
T PRK10537 201 MHRKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 236 (356)
T ss_pred HHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 741996899898837999999999729997999458
No 463
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=29.74 E-value=36 Score=14.28 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCCEEEE----ECCCHHH-------HHHHHHHHHHHCCC--CCCCC
Q ss_conf 66999999998279959999----3381379-------99999999875088--61101
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVIT----GIGKSGH-------IGSKLASTLASTGT--PSFFV 96 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~----GvG~S~~-------ia~k~a~tl~s~G~--~a~~~ 96 (341)
+...+|...+.++.=++++. |+|+-.. +-+++...|.+-|. ..+|.
T Consensus 33 pgv~~aLk~L~~~GY~liVVTNQsGIgrG~~t~ed~~~ih~~m~~~L~~~Gi~id~Iy~ 91 (354)
T PRK05446 33 PGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDGPHNLMMQIFESQGIKFDDVLI 91 (354)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 67899999999879989999488511479889999999999999999977973475998
No 464
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=29.74 E-value=38 Score=14.13 Aligned_cols=40 Identities=15% Similarity=-0.052 Sum_probs=31.6
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 1047078983687807887666663204562799844788
Q gi|255764505|r 110 TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITSENK 149 (341)
Q Consensus 110 ~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~ 149 (341)
.+-|++|.-.+|-.+.+.++.+...-..+..++.+-+--.
T Consensus 67 ~~~D~viva~Ks~~~~~a~~~l~~~~~~~t~il~lQNG~g 106 (306)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (306)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 8976899970456779999999863399948999348775
No 465
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=29.73 E-value=37 Score=14.25 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99338137999999999875088611012
Q gi|255764505|r 69 ITGIGKSGHIGSKLASTLASTGTPSFFVH 97 (341)
Q Consensus 69 ~~GvG~S~~ia~k~a~tl~s~G~~a~~~~ 97 (341)
-+|.||| +|++-+|.-|-.-|..|-|+|
T Consensus 61 ~tGtGKn-~vs~liA~~Ly~~G~~S~~Vh 88 (127)
T pfam06309 61 WTGTGKN-FVAEIIADNLYRDGLRSPYVH 88 (127)
T ss_pred CCCCCHH-HHHHHHHHHHHHCCCCCCCEE
T ss_conf 9998798-999999999875434787568
No 466
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=29.71 E-value=38 Score=14.13 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=21.2
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 1047078983687807887666663204562799844
Q gi|255764505|r 110 TRDDLIIVLSWSGSSDELKAILYYARRFSIPLIAITS 146 (341)
Q Consensus 110 ~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT~ 146 (341)
..-|+++.---.|.+.++...+ .+.|+++|-+++
T Consensus 65 ~~~Dvvf~alp~~~s~~~~~~~---~~~g~~VIDlS~ 98 (121)
T pfam01118 65 KDVDIVFFALPAGVSKELAPKL---LEAGAVVIDLSS 98 (121)
T ss_pred CCCCEEEECCCHHHHHHHHHHH---HHCCCEEEECCH
T ss_conf 3898999838768999999998---715989987856
No 467
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=29.65 E-value=38 Score=14.12 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=45.6
Q ss_pred CEEEEE---CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHC---CCEEECCCEEE------EEECCCCCHHHHHHHHH
Q ss_conf 599993---3813799999999987508861101233023202---30121047078------98368780788766666
Q gi|255764505|r 66 RVVITG---IGKSGHIGSKLASTLASTGTPSFFVHAAEASHGD---LGMITRDDLII------VLSWSGSSDELKAILYY 133 (341)
Q Consensus 66 rv~~~G---vG~S~~ia~k~a~tl~s~G~~a~~~~~~ea~Hgd---lg~i~~~Dv~i------~iS~SG~t~e~~~~~~~ 133 (341)
-++++| .|||. .++-++..+...+..++|+...+...-+ +..+...|+++ ...+...-.++-.+...
T Consensus 40 ~l~i~G~~GsGKTH-Ll~a~~~~~~~~~~~~~yl~~~~~~~~~~~~l~~l~~~d~l~iDDi~~i~~~~~~e~~lF~l~N~ 118 (226)
T TIGR03420 40 FLYLWGESGSGKSH-LLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYNR 118 (226)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHHH
T ss_conf 69998999998899-99999999862699579952999877539999727448999996633343783789999999999
Q ss_pred HHCCCCCEEEEECCCC
Q ss_conf 3204562799844788
Q gi|255764505|r 134 ARRFSIPLIAITSENK 149 (341)
Q Consensus 134 ~k~~~~~iI~iT~~~~ 149 (341)
++..|.+++ +|+...
T Consensus 119 ~~~~~~~il-its~~~ 133 (226)
T TIGR03420 119 VREAGGRLL-IAGRAA 133 (226)
T ss_pred HHHHCCEEE-EECCCC
T ss_conf 986528289-867888
No 468
>PRK08462 biotin carboxylase; Validated
Probab=29.50 E-value=38 Score=14.10 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHH
Q ss_conf 79987899999999679958999806984899985888974
Q gi|255764505|r 297 LEDTLLTVAMQLLRQHNISVLMVVDDCQKAIGIVHFLDLLR 337 (341)
Q Consensus 297 ~~d~~i~eAl~lM~~~kI~~LpVVD~~~~lvGiIt~~DLlk 337 (341)
.-..+-.+|++.|..- ++ +-.+.|+-|-.++++
T Consensus 392 ~~g~~R~~Ai~rl~~a-------L~-e~~I~Gv~Tni~~l~ 424 (446)
T PRK08462 392 VWGEDRNRAIAKMKRA-------LD-EFKVEGIKTTIPFHL 424 (446)
T ss_pred EECCCHHHHHHHHHHH-------HH-CCEEECCCCCHHHHH
T ss_conf 9899999999999999-------84-459989328499999
No 469
>PRK05560 DNA gyrase subunit A; Validated
Probab=29.37 E-value=24 Score=15.52 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 1210470789836878078876666632045
Q gi|255764505|r 108 MITRDDLIIVLSWSGSSDELKAILYYARRFS 138 (341)
Q Consensus 108 ~i~~~Dv~i~iS~SG~t~e~~~~~~~~k~~~ 138 (341)
+|.+.|+++.+|++|.-+-+---.-.++++|
T Consensus 499 LI~~E~vvVtlS~~GYIKR~~~~~yr~Q~RG 529 (822)
T PRK05560 499 LIANEDVVVTLTHGGYIKRVPLDEYRAQRRG 529 (822)
T ss_pred CCCCCCEEEEEECCCEEEEECHHHHHHHCCC
T ss_conf 1777646999946826886132665531267
No 470
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.23 E-value=39 Score=14.07 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=18.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 707898368780788766666320456279984
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
.++|.++....+.++...++.+|+.|+.+++|.
T Consensus 108 kvlvviTdG~s~d~~~~~a~~lr~~gV~i~aVG 140 (165)
T cd01481 108 QFLVLITGGKSQDDVERPAVALKRAGIVPFAIG 140 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 699998489885378999999998897899996
No 471
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=28.93 E-value=39 Score=14.04 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=15.9
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCC-CCEEE
Q ss_conf 70789836878078876666632045-62799
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRFS-IPLIA 143 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~~-~~iI~ 143 (341)
---+.+|.+|+|. +++++.+.+.| ++|+|
T Consensus 649 ~~GVIVq~GGQtp--~nlA~~L~~~GG~~iLG 678 (1089)
T TIGR01369 649 PEGVIVQFGGQTP--LNLAKELEEAGGVPILG 678 (1089)
T ss_pred CCEEEEECCCHHH--HHHHHHHHHCCCCEEEC
T ss_conf 6679997487326--78999999708931736
No 472
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=28.77 E-value=32 Score=14.63 Aligned_cols=140 Identities=22% Similarity=0.280 Sum_probs=65.7
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC--CCCHHHHCC-----CE-E-ECCCEEEEEECCCC--CHHHHHH
Q ss_conf 279959999338137999999999875088611012--330232023-----01-2-10470789836878--0788766
Q gi|255764505|r 62 AIKGRVVITGIGKSGHIGSKLASTLASTGTPSFFVH--AAEASHGDL-----GM-I-TRDDLIIVLSWSGS--SDELKAI 130 (341)
Q Consensus 62 ~~~grv~~~GvG~S~~ia~k~a~tl~s~G~~a~~~~--~~ea~Hgdl-----g~-i-~~~Dv~i~iS~SG~--t~e~~~~ 130 (341)
..+ -|+|.|+|.|+- +| +|+. ....+||=. |. + .|+=-||+-+--|- ..=.-.+
T Consensus 27 P~q-vvVVSGIGCS~k-------------tP-hY~n~~g~h~LHGRA~P~A~G~KlANP~L~Viv~GGDGD~~GIG~~Hf 91 (302)
T TIGR02177 27 PEQ-VVVVSGIGCSAK-------------TP-HYVNVNGFHGLHGRALPVATGIKLANPKLKVIVVGGDGDLYGIGGNHF 91 (302)
T ss_pred CCC-EEEEECCCCCCC-------------CC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 852-799813131134-------------77-300136645233563101101201089846898606864101105778
Q ss_pred HHHHHCC--------CCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 6663204--------56279984478895452145337688615543247521789999999999999999985033878
Q gi|255764505|r 131 LYYARRF--------SIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDALAIALLESRNFSEN 202 (341)
Q Consensus 131 ~~~~k~~--------~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dalav~l~~~~~~t~~ 202 (341)
+...||+ ...+=|+|.-.-||=.+.---.=.+|...=.+|.| =..+.+|.|=.- -+|+|+-+
T Consensus 92 va~gRRN~dIt~l~~DN~VYGLTKGQAsPTl~~G~kTk~lp~pni~~~~N-----P~lLAiA~GytF-----VARgfs~d 161 (302)
T TIGR02177 92 VAAGRRNVDITVLVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVN-----PLLLAIAAGYTF-----VARGFSGD 161 (302)
T ss_pred HHHHCCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHHHHHCCCCH-----HHHHHHHH
T ss_conf 75411478824884247054666553452146871042335787765413-----899999808527-----45888874
Q ss_pred --------HHHHHHHHHHHHHHH---HHHHHHHCC
Q ss_conf --------887531100111124---333332104
Q gi|255764505|r 203 --------DFYVLHPGGKLGTLF---VCASDVMHS 226 (341)
Q Consensus 203 --------df~~~HPgG~lg~~L---l~V~DiM~~ 226 (341)
.=|.+|+|=++=--| -|=.+||+.
T Consensus 162 ~~hLKeiiK~A~~H~G~AlvDiLQPCvTyN~inT~ 196 (302)
T TIGR02177 162 VAHLKEIIKEAINHKGYALVDILQPCVTYNKINTY 196 (302)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCH
T ss_conf 89999999997328984587611788874666665
No 473
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=28.51 E-value=40 Score=13.99 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCEEEEEEECCCH
Q ss_conf 38888987410466200000043232324123403
Q gi|255764505|r 238 PLIDAITILSEKRFGCVAVVDEGQKLKGIITEGDI 272 (341)
Q Consensus 238 si~eal~~m~~~~~g~v~Vvd~~~~liGIITdgDl 272 (341)
.+.+|+..+.+.++..|+|+|++|--.|-+|..|+
T Consensus 35 g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f 69 (181)
T COG0241 35 GVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADF 69 (181)
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
T ss_conf 58999999886797699998777755667668999
No 474
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=28.43 E-value=40 Score=13.98 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=8.2
Q ss_pred HHHHHCCCCEEEEECCCHH
Q ss_conf 9998279959999338137
Q gi|255764505|r 58 EKIKAIKGRVVITGIGKSG 76 (341)
Q Consensus 58 ~~i~~~~grv~~~GvG~S~ 76 (341)
..+++.+|.-.-+++|..|
T Consensus 52 k~iL~~k~~~~~~~vgDEG 70 (296)
T pfam00113 52 KSVIKAKYGQDATNVGDEG 70 (296)
T ss_pred HHHHHHHCCCCCCCCCCCC
T ss_conf 9999974787778757787
No 475
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=28.20 E-value=40 Score=13.95 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHCCCCE-E---EEECCCHHHHHH-------------------HHHHHH-HHCCCCCCCCCCCCHHH-HCC
Q ss_conf 6999999998279959-9---993381379999-------------------999998-75088611012330232-023
Q gi|255764505|r 52 QFHCAVEKIKAIKGRV-V---ITGIGKSGHIGS-------------------KLASTL-ASTGTPSFFVHAAEASH-GDL 106 (341)
Q Consensus 52 ~~~~av~~i~~~~grv-~---~~GvG~S~~ia~-------------------k~a~tl-~s~G~~a~~~~~~ea~H-gdl 106 (341)
+=..|++.+.... ++ + +.|.|||..... |.|.-| .+.|++|..++.-+.-- ..-
T Consensus 350 EQ~~A~~hiT~~~-~iavVvG~AGtGKStmL~aAReawEa~GyrV~GaALsGkAAegLe~~sGI~SrTlAs~e~~w~~g~ 428 (992)
T PRK13889 350 EQADALAHVTDGR-DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGR 428 (992)
T ss_pred HHHHHHHHHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999864789-758998338887889999999999977988981150068999765347943167999999874673
Q ss_pred CEEECCCEEEEEECCC--CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0121047078983687--80788766666320456279984
Q gi|255764505|r 107 GMITRDDLIIVLSWSG--SSDELKAILYYARRFSIPLIAIT 145 (341)
Q Consensus 107 g~i~~~Dv~i~iS~SG--~t~e~~~~~~~~k~~~~~iI~iT 145 (341)
..+.++||+| |--.| -|+.+-.+++.+.+.|+++|.+-
T Consensus 429 ~~L~~~dVlV-VDEAGMVgSRqMarll~~Ae~AGAKVVLVG 468 (992)
T PRK13889 429 DLLTARDVLV-IDEAGMVGTRQLERVLSHAADAGAKVVLVG 468 (992)
T ss_pred CCCCCCCEEE-EECCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 3478985899-967655774999999999998499899948
No 476
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=28.05 E-value=40 Score=13.93 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=31.2
Q ss_pred EEECCCEEEEEEC---CCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 1210470789836---878078876666632045627998447
Q gi|255764505|r 108 MITRDDLIIVLSW---SGSSDELKAILYYARRFSIPLIAITSE 147 (341)
Q Consensus 108 ~i~~~Dv~i~iS~---SG~t~e~~~~~~~~k~~~~~iI~iT~~ 147 (341)
.+.++|+++.-+- +-++.|+++.++.++++|+.++.+..+
T Consensus 58 ~~~~gD~lvV~~LDRLgRs~~d~l~~l~~l~~~gv~l~~~~~~ 100 (200)
T PRK13413 58 RVRKGDILIVSELSRLGRNLFEIMEILNICMTKEVIVWTIKEG 100 (200)
T ss_pred HCCCCCEEEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 6659998999767374288999999999999689789986678
No 477
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.02 E-value=40 Score=13.93 Aligned_cols=67 Identities=27% Similarity=0.332 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-HHCCCCCCC----------CCCCCHHHHCCCE---------EE
Q ss_conf 669999999982799599993381379999999998-750886110----------1233023202301---------21
Q gi|255764505|r 51 FQFHCAVEKIKAIKGRVVITGIGKSGHIGSKLASTL-ASTGTPSFF----------VHAAEASHGDLGM---------IT 110 (341)
Q Consensus 51 ~~~~~av~~i~~~~grv~~~GvG~S~~ia~k~a~tl-~s~G~~a~~----------~~~~ea~Hgdlg~---------i~ 110 (341)
+++.+++++|.+++-=+++.|-|-..--|.+....| -.+|.|.+. -|| .+-|.+|+ +.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp--~~lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHP--LSLGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHC
T ss_conf 99999999997389978998886564134999999999879898972455766787687--5354344565088997654
Q ss_pred CCCEEEEEE
Q ss_conf 047078983
Q gi|255764505|r 111 RDDLIIVLS 119 (341)
Q Consensus 111 ~~Dv~i~iS 119 (341)
+-|+++++-
T Consensus 266 ~aDlll~vG 274 (550)
T COG0028 266 EADLLLAVG 274 (550)
T ss_pred CCCEEEEEC
T ss_conf 388999958
No 478
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.99 E-value=40 Score=13.92 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=22.5
Q ss_pred CCCE-EEEECCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9959-99933813799999999987508861
Q gi|255764505|r 64 KGRV-VITGIGKSGHIGSKLASTLASTGTPS 93 (341)
Q Consensus 64 ~grv-~~~GvG~S~~ia~k~a~tl~s~G~~a 93 (341)
+||| ++||.|.|.=|++-+|-.|+.-|-.-
T Consensus 7 ~GKvAlVTGaGgs~GIG~aiA~~lA~~GA~V 37 (298)
T PRK06300 7 TGKVAFIAGIGDDQGYGWGIAKMLAEAGATI 37 (298)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 9997999087998629999999999829999
No 479
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=27.95 E-value=34 Score=14.50 Aligned_cols=12 Identities=42% Similarity=0.398 Sum_probs=5.4
Q ss_pred CCCCHHHHHHHH
Q ss_conf 878078876666
Q gi|255764505|r 121 SGSSDELKAILY 132 (341)
Q Consensus 121 SG~t~e~~~~~~ 132 (341)
.|...|....+.
T Consensus 115 ~g~~~e~~~~~~ 126 (326)
T PRK05105 115 YGDPDELILKLA 126 (326)
T ss_pred CCCHHHHHHHHH
T ss_conf 798689999998
No 480
>PRK09206 pyruvate kinase; Provisional
Probab=27.64 E-value=41 Score=13.88 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=12.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 78983687807887666663204
Q gi|255764505|r 115 IIVLSWSGSSDELKAILYYARRF 137 (341)
Q Consensus 115 ~i~iS~SG~t~e~~~~~~~~k~~ 137 (341)
.|++|+--+.+++.++=+.++++
T Consensus 188 ~IalSFVrsa~DV~~lr~~l~~~ 210 (470)
T PRK09206 188 FVAASFIRKRSDVLEIREHLKAH 210 (470)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99985879878899999999972
No 481
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=27.57 E-value=37 Score=14.19 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=33.4
Q ss_pred EEEEHHHHHHHHHH--------HHCCCCCEEEECCCCCEEEEEEEC------CCHHHHHHC
Q ss_conf 55100238888987--------410466200000043232324123------403567617
Q gi|255764505|r 232 LVKIGCPLIDAITI--------LSEKRFGCVAVVDEGQKLKGIITE------GDIFRNFHK 278 (341)
Q Consensus 232 ~V~~~~si~eal~~--------m~~~~~g~v~Vvd~~~~liGIITd------gDlrR~l~~ 278 (341)
-|.|..-++.+++. |+.-+-|+.|+.||+++|.|+--- .|+|.++..
T Consensus 261 ev~p~eGlk~~l~~gvPle~vT~sSDgnGS~P~Fde~g~l~~~~v~~~~sLf~~v~~av~~ 321 (391)
T TIGR01975 261 EVKPAEGLKKLLEAGVPLEKVTFSSDGNGSLPLFDENGELKGLGVGSVESLFEEVREAVKE 321 (391)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
T ss_conf 4376789999996389752356423578874637678746335760416678999999851
No 482
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=27.45 E-value=41 Score=13.86 Aligned_cols=148 Identities=21% Similarity=0.247 Sum_probs=84.4
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCC--------CCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHH----HHHH
Q ss_conf 7078983687807887666663204--------562799844788954521453376886155432475217----8999
Q gi|255764505|r 113 DLIIVLSWSGSSDELKAILYYARRF--------SIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPT----TSAI 180 (341)
Q Consensus 113 Dv~i~iS~SG~t~e~~~~~~~~k~~--------~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt----~Stt 180 (341)
-++=.+|-||++.=+.+.+--+-++ ..+.-.|.+-. .=|=+|.+ ..+|.|-.|- |=|=
T Consensus 668 t~iTGVSGSGKSTLind~L~~~~~~~L~~~~~~~g~~~~I~G~e------~lDKvi~i----DQsPIGRTPRSNPATYtg 737 (956)
T TIGR00630 668 TCITGVSGSGKSTLINDTLYPALARRLNGAKTEPGRYKDIEGLE------HLDKVIEI----DQSPIGRTPRSNPATYTG 737 (956)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC------CCCCEEEE----CCCCCCCCCCCCCCCCCC
T ss_conf 99974458745777999999999999852764566520363000------23846886----577434346886432013
Q ss_pred HHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHH---------------------------HHHH-HHHHHHHCCCCCCE
Q ss_conf 9999999999-99998503387888753110011---------------------------1124-33333210475430
Q gi|255764505|r 181 MQLAIGDALA-IALLESRNFSENDFYVLHPGGKL---------------------------GTLF-VCASDVMHSGDSIP 231 (341)
Q Consensus 181 ~~l~~~Dala-v~l~~~~~~t~~df~~~HPgG~l---------------------------g~~L-l~V~DiM~~~~~ip 231 (341)
++=-+-+-.| +--++.||+++--|.-|=|||.= |++- ...=+|-.+++.|.
T Consensus 738 vFd~IR~LFA~~PeAk~RGY~~GRFSFNVkGGRCE~C~GDG~ikiEMhFLPDVYV~CevC~GkRYN~eTLEv~YkGK~Ia 817 (956)
T TIGR00630 738 VFDEIRELFAETPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIA 817 (956)
T ss_pred CCHHHHHHHHCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEH
T ss_conf 43057776405853787388998614658888432426885478851348882031787788403764016884287112
Q ss_pred EEEEHHHHHHHHHHHH-------------CCCCCEEEECCCCCEEEEEEECCCHHHH
Q ss_conf 5510023888898741-------------0466200000043232324123403567
Q gi|255764505|r 232 LVKIGCPLIDAITILS-------------EKRFGCVAVVDEGQKLKGIITEGDIFRN 275 (341)
Q Consensus 232 ~V~~~~si~eal~~m~-------------~~~~g~v~Vvd~~~~liGIITdgDlrR~ 275 (341)
=| -|+|+.||..-+. +=++|++ .=|+..=.+|-|...|.
T Consensus 818 dV-LdMtveEA~eFF~~~P~I~rKL~~L~dVGLgY~----~LGQpatTLSGGEAQRi 869 (956)
T TIGR00630 818 DV-LDMTVEEAREFFEAVPKISRKLQTLCDVGLGYI----KLGQPATTLSGGEAQRI 869 (956)
T ss_pred HH-HCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEE----ECCCCCCCCCCHHHHHH
T ss_conf 33-158668998874226058999999876242102----04756664231589999
No 483
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=27.40 E-value=41 Score=13.85 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=12.5
Q ss_pred CEEEEEC---CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 5999933---813799999999987508861
Q gi|255764505|r 66 RVVITGI---GKSGHIGSKLASTLASTGTPS 93 (341)
Q Consensus 66 rv~~~Gv---G~S~~ia~k~a~tl~s~G~~a 93 (341)
||.++|- |||- .++.++..+.+.|.+-
T Consensus 2 ~v~i~G~~~sGKtt-l~~~L~~~~~~~g~~~ 31 (122)
T pfam03205 2 IVLVVGPKDSGKTT-LIRKLLNYLKRRGYRV 31 (122)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHHHCCCCE
T ss_conf 79999489998999-9999999999879944
No 484
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=27.27 E-value=22 Score=15.86 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.3
Q ss_pred HHHHHHCCCCCEEEEECCCC
Q ss_conf 66663204562799844788
Q gi|255764505|r 130 ILYYARRFSIPLIAITSENK 149 (341)
Q Consensus 130 ~~~~~k~~~~~iI~iT~~~~ 149 (341)
+-..||+.|.++|+|+...|
T Consensus 111 AER~AkqTG~~VIaiS~rrN 130 (349)
T COG1623 111 AERVAKQTGNPVIAISERRN 130 (349)
T ss_pred HHHHHHHHCCEEEEEECCCC
T ss_conf 99999975985899960454
No 485
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=27.24 E-value=42 Score=13.83 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHCCCCE--EEEECCCHHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHCCCEEECCCEEEEEECCC
Q ss_conf 366999999998279959--99933813799999999987508861101-----23302320230121047078983687
Q gi|255764505|r 50 SFQFHCAVEKIKAIKGRV--VITGIGKSGHIGSKLASTLASTGTPSFFV-----HAAEASHGDLGMITRDDLIIVLSWSG 122 (341)
Q Consensus 50 ~~~~~~av~~i~~~~grv--~~~GvG~S~~ia~k~a~tl~s~G~~a~~~-----~~~ea~Hgdlg~i~~~Dv~i~iS~SG 122 (341)
+..|++-+..|..++..+ +..-+|.++....++...| |.+.=.- ......||..+. --.++...--.++
T Consensus 184 e~gl~~ll~ei~~~R~~~~~fl~~~~~~~~~~~~l~~~l---gl~~~~~~e~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (1190)
T TIGR02784 184 ETGLEALLAEIVAKRDALSAFLDEAGGAEGAEADLRRAL---GLAPGDTAEDLLEAVWPLPGLPRL-ALALIAALLKSGG 259 (1190)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHCCCCCCHH-HHHHHHHHHCCCC
T ss_conf 558789999999616888789998640235899999982---979998977899996037898189-9999998613566
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHH-----HHHHHH---HHHHHHHH
Q ss_conf 8078876666632045627998447889545214533768861554324752178999-----999999---99999999
Q gi|255764505|r 123 SSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAI-----MQLAIG---DALAIALL 194 (341)
Q Consensus 123 ~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt-----~~l~~~---Dalav~l~ 194 (341)
.+++....+..+++-. --+++.-.+..+..+++.-+=++-.+++ .-+.+.. .+-.+- +-|..++=
T Consensus 260 ~~~~~~~~~~~l~~a~-----~~~d~~a~~~~l~~~~l~~~G~~k~~~~--~~~k~~~~~~p~l~~~~~~~~~~~~~~~~ 332 (1190)
T TIGR02784 260 GSKDAAAALSQLREAA-----AESDPVARLDLLLRAFLTSKGEPKSASA--VLKKAIQKSLPDLAEALEDAASRVEALRE 332 (1190)
T ss_pred CCHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5047999987887506-----8787045899999987406887663034--65456565458999999999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEC--CCCCEEEEEEEC---
Q ss_conf 850338788875311001111243333321047543055100238888987410466200000--043232324123---
Q gi|255764505|r 195 ESRNFSENDFYVLHPGGKLGTLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVV--DEGQKLKGIITE--- 269 (341)
Q Consensus 195 ~~~~~t~~df~~~HPgG~lg~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vv--d~~~~liGIITd--- 269 (341)
+.+-+..-++.+. .=.|+.. -..+++..++.=-.++-|+-|..++..+++.+.|. +|. =++| +==|+-|
T Consensus 333 r~~~~~~~~~t~A--AL~lA~~--l~~~y~~~K~~rG~LDF~DLI~rt~~LL~r~~~g~-WV~YKLD~G-iDHILvDEAQ 406 (1190)
T TIGR02784 333 RLRALRMAERTLA--ALRLAAR--LLQRYAALKKARGLLDFDDLIERTVALLARPSAGA-WVHYKLDRG-IDHILVDEAQ 406 (1190)
T ss_pred HHHHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC-CEEHCCCCC-CCEEEECCHH
T ss_conf 9999999998899--9999999--99999999874789876779999999708898674-300101775-0437712200
Q ss_pred ------CCHHHHHHCCCC-CCCHHHH----CCCCCEEE
Q ss_conf ------403567617823-3709883----48897897
Q gi|255764505|r 270 ------GDIFRNFHKDLN-TLSVEDV----MIKNPKVI 296 (341)
Q Consensus 270 ------gDlrR~l~~~~~-~~~v~~i----Mt~~p~~I 296 (341)
-+|.+.|..+++ ...+++. ..|..+.|
T Consensus 407 DTSP~QW~iI~~LA~eFF~GegAR~~sGr~~~RTiFAV 444 (1190)
T TIGR02784 407 DTSPEQWEIIQALAEEFFSGEGARSGSGREVERTIFAV 444 (1190)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf 48865899999998763068640246762245326887
No 486
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) . These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognized by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold..
Probab=27.16 E-value=42 Score=13.82 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=35.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 7531100111-12433333210475430551002388889874104662000000432
Q gi|255764505|r 205 YVLHPGGKLG-TLFVCASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCVAVVDEGQ 261 (341)
Q Consensus 205 ~~~HPgG~lg-~~Ll~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v~Vvd~~~ 261 (341)
..-|+.|++- -+-+--+.+|...++ +|.+|-.+-..|..|.++|-...+|+|.+=
T Consensus 191 ~~vH~~G~lknDqsLYf~~v~~~~e~--yv~~dp~l~~~L~~l~~~GKklFLlTNS~y 246 (402)
T TIGR02244 191 DWVHVEGSLKNDQSLYFKKVMSNPEK--YVLRDPELVRFLEKLREHGKKLFLLTNSDY 246 (402)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHCCEEEEEECCCH
T ss_conf 75232454310146888999863752--114785689999999972780798864880
No 487
>KOG2390 consensus
Probab=27.08 E-value=42 Score=13.82 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=41.3
Q ss_pred EEE--CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEEEEECCCCCCC--CC-----------HHHHHHH
Q ss_conf 983--68780788766666320456279984478895452145337688615543247--52-----------1789999
Q gi|255764505|r 117 VLS--WSGSSDELKAILYYARRFSIPLIAITSENKSVVACHADIVLTLPKEPESCPHG--LA-----------PTTSAIM 181 (341)
Q Consensus 117 ~iS--~SG~t~e~~~~~~~~k~~~~~iI~iT~~~~S~la~~ad~~l~~~~~~Ea~~~~--~a-----------Pt~Stt~ 181 (341)
+-| +||++++.+.+-+.-+-+.. .+=+|-..-|..+++|+.+|+||.- +. |-.-.+.
T Consensus 315 a~sagns~e~ka~l~l~pegrlr~l--------~nltLLe~pdEplYiPvTQEp~plTEDli~e~~EvllklG~g~~L~~ 386 (669)
T KOG2390 315 AHSAGNSDEFKAELILEPEGRLRLL--------FNLTLLEIPDEPLYIPVTQEPCPLTEDLIDERNEVLLKLGEGDRLHL 386 (669)
T ss_pred HHHCCCCCHHHHHHCCCCCCHHHHH--------CCEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 7742687304466524765225551--------47022136997303046678888728888777889883486310689
Q ss_pred HHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH
Q ss_conf 999999999999985-----03387888753110
Q gi|255764505|r 182 QLAIGDALAIALLES-----RNFSENDFYVLHPG 210 (341)
Q Consensus 182 ~l~~~Dalav~l~~~-----~~~t~~df~~~HPg 210 (341)
|+.+-- | .+-|+. -|--.+||.+||--
T Consensus 387 qm~~~~-l-lsdmeSfkAANPgcilEDFvRWhSP 418 (669)
T KOG2390 387 QMELVK-L-LSDMESFKAANPGCILEDFVRWHSP 418 (669)
T ss_pred HHHHHH-H-HHHHHHHHCCCCCCCHHHHHHHCCC
T ss_conf 999999-9-9988987437998448876540587
No 488
>pfam00521 DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A.
Probab=26.82 E-value=35 Score=14.41 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=7.9
Q ss_pred EEEEEEC-CCCCHHHHHHHH
Q ss_conf 0789836-878078876666
Q gi|255764505|r 114 LIIVLSW-SGSSDELKAILY 132 (341)
Q Consensus 114 v~i~iS~-SG~t~e~~~~~~ 132 (341)
++=...+ -|+..|-.-..+
T Consensus 112 ~l~~~~~yDg~~~EP~~y~p 131 (428)
T pfam00521 112 TVDFVPNYDGSEKEPTVLPP 131 (428)
T ss_pred CCCCCCCCCCCCCCCHHCCC
T ss_conf 01550578987067511066
No 489
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=26.79 E-value=42 Score=13.78 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=40.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE--EECCCCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 47078983687807887666663204562799--8447889545214533768861554324752178999999999999
Q gi|255764505|r 112 DDLIIVLSWSGSSDELKAILYYARRFSIPLIA--ITSENKSVVACHADIVLTLPKEPESCPHGLAPTTSAIMQLAIGDAL 189 (341)
Q Consensus 112 ~Dv~i~iS~SG~t~e~~~~~~~~k~~~~~iI~--iT~~~~S~la~~ad~~l~~~~~~Ea~~~~~aPt~Stt~~l~~~Dal 189 (341)
+.=++++|.-|.+...-. ..+.-...+.| =++-|...+.++.+-.|.+|..++...+|+ |.++.+++.+|+
T Consensus 74 ~~rl~~~tt~~~~~~~~~---~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~~~~RSLNL----snsvavv~yEa~ 146 (155)
T COG0219 74 GGRLFALTTKGTTTYTDV---SFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMRPGVRSLNL----SNTVAVVLYEAL 146 (155)
T ss_pred CCEEEEEEECCCCCCCCC---CCCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH----HHHHHHHHHHHH
T ss_conf 753999994366666645---6788878997888889999999739335598336878763108----887999999999
No 490
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.75 E-value=42 Score=13.77 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHH-HHH--HHHHHHHHHHCCCCCCEEEEE-----H----HHHHHHHHHH-HCCCCCEEEECC
Q ss_conf 3878887531100-111--124333332104754305510-----0----2388889874-104662000000
Q gi|255764505|r 199 FSENDFYVLHPGG-KLG--TLFVCASDVMHSGDSIPLVKI-----G----CPLIDAITIL-SEKRFGCVAVVD 258 (341)
Q Consensus 199 ~t~~df~~~HPgG-~lg--~~Ll~V~DiM~~~~~ip~V~~-----~----~si~eal~~m-~~~~~g~v~Vvd 258 (341)
+...+|...||.- +-| +++--++=++. ..++-..++ | ..+.+.+..+ .+.+...+.|..
T Consensus 132 vgl~~~~~~~p~~LSGGqkQRvaiA~aLa~-~P~iLllDEPTs~LD~~~~~~i~~~l~~l~~e~g~TvI~itH 203 (283)
T PRK13640 132 VGMLDYIDSEPANLSGGQKQRVAIAGILAV-EPQIIILDESTSMLDPAGKEQILKLIRKLMKDNNLTIISITH 203 (283)
T ss_pred CCCHHHHHCCHHHCCHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 799777647922299999999999999971-999999768745489899999999999999706989999978
No 491
>TIGR02389 RNA_pol_rpoA2 DNA-directed RNA polymerase, subunit A''; InterPro: IPR012757 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=26.61 E-value=26 Score=15.31 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=12.5
Q ss_pred CCCCEEEECCC---CC--EEEEEEECCC
Q ss_conf 46620000004---32--3232412340
Q gi|255764505|r 249 KRFGCVAVVDE---GQ--KLKGIITEGD 271 (341)
Q Consensus 249 ~~~g~v~Vvd~---~~--~liGIITdgD 271 (341)
++++.++|.-+ +. +.+ |.|+|-
T Consensus 235 kgIkrvvir~E~~k~dsyEy~-i~TeGS 261 (397)
T TIGR02389 235 KGIKRVVIRREEEKGDSYEYV-IYTEGS 261 (397)
T ss_pred ECCEEEEEEEECCCCCEEEEE-EEECCC
T ss_conf 043289999866888427999-986063
No 492
>KOG0537 consensus
Probab=26.24 E-value=43 Score=13.71 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCCCEE
Q ss_conf 38788875311001111243--333321047543055100238888987410466200
Q gi|255764505|r 199 FSENDFYVLHPGGKLGTLFV--CASDVMHSGDSIPLVKIGCPLIDAITILSEKRFGCV 254 (341)
Q Consensus 199 ~t~~df~~~HPgG~lg~~Ll--~V~DiM~~~~~ip~V~~~~si~eal~~m~~~~~g~v 254 (341)
+..-.|..-||||. .-|+ -=+|.+..-+.+ . .-.+|...|.+..+|-+
T Consensus 30 YDvT~Fl~eHPGG~--~vLl~~AGkDaT~~F~~~-----g-HS~~A~~ml~~y~ig~~ 79 (124)
T KOG0537 30 YDVTSFLDEHPGGE--DVLLEYAGKDATEAFEDV-----G-HSKDAREMLEEYYIGEV 79 (124)
T ss_pred EECCCHHHHCCCHH--HHHHHHHCHHHHHHCCCC-----C-CCHHHHHHHHHCCCCCC
T ss_conf 74630253198817--999987366668762156-----7-85899998540531232
No 493
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=26.18 E-value=43 Score=13.70 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 78999999999999999998503387888753110011
Q gi|255764505|r 176 TTSAIMQLAIGDALAIALLESRNFSENDFYVLHPGGKL 213 (341)
Q Consensus 176 t~Stt~~l~~~Dalav~l~~~~~~t~~df~~~HPgG~l 213 (341)
..|-+|.+.+.-.|+--+.+..+++. ...|||.-.
T Consensus 194 ~~SKlanilf~~eL~rrl~~~~~i~~---~a~hPG~V~ 228 (322)
T PRK07453 194 KDSKLCNMLTMRELHRRYHESTGITF---SSLYPGCVA 228 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEE---EEECCCCEE
T ss_conf 99999999999999986124789379---971782411
No 494
>PRK10637 cysG siroheme synthase; Provisional
Probab=26.16 E-value=43 Score=13.70 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=13.6
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHH
Q ss_conf 1210470789836878078876666
Q gi|255764505|r 108 MITRDDLIIVLSWSGSSDELKAILY 132 (341)
Q Consensus 108 ~i~~~Dv~i~iS~SG~t~e~~~~~~ 132 (341)
.+..+|++|+||.+|.++-+-+.++
T Consensus 116 iv~Rg~l~IAISTgG~sP~LAr~lR 140 (457)
T PRK10637 116 IIDRSPLMVAVSSGGTSPVLARLLR 140 (457)
T ss_pred EEECCCEEEEEECCCCCHHHHHHHH
T ss_conf 5731763898615898708899999
No 495
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=26.14 E-value=43 Score=13.70 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCC--C------------CCCHHHHCCC-------EEECCCEEEEEECCCCCH---HH
Q ss_conf 3813799999999987508861101--2------------3302320230-------121047078983687807---88
Q gi|255764505|r 72 IGKSGHIGSKLASTLASTGTPSFFV--H------------AAEASHGDLG-------MITRDDLIIVLSWSGSSD---EL 127 (341)
Q Consensus 72 vG~S~~ia~k~a~tl~s~G~~a~~~--~------------~~ea~Hgdlg-------~i~~~Dv~i~iS~SG~t~---e~ 127 (341)
.|.+|.+++.++..|..-|.+-..+ + +.|..+||+. .+..-|.++......... ..
T Consensus 4 ~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~gvd~v~~~~~~~~~~~~~~~ 83 (232)
T pfam05368 4 FGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGVDVVFSVTGFWLSKEIEDG 83 (232)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 89682899999999985899389997187366566664179889990688878999996799889991588741779999
Q ss_pred HHHHHHHHCCCCCEEEEEC
Q ss_conf 7666663204562799844
Q gi|255764505|r 128 KAILYYARRFSIPLIAITS 146 (341)
Q Consensus 128 ~~~~~~~k~~~~~iI~iT~ 146 (341)
..+++.|++.|++-+-.++
T Consensus 84 ~~~~~AA~~aGVk~~V~ss 102 (232)
T pfam05368 84 KKLADAAKEAGVKHFIPSE 102 (232)
T ss_pred HHHHHHHHHCCCCCEEEEE
T ss_conf 9999999973998345555
No 496
>pfam02457 DisA_N DisA bacterial checkpoint controller nucleotide-binding. The DisA protein is a bacterial checkpoint protein that dimerizes into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, pfam10635, that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, pfam00633, the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branch
Probab=26.12 E-value=24 Score=15.62 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=19.5
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCEEEEEEE
Q ss_conf 888898741046620000004323232412
Q gi|255764505|r 239 LIDAITILSEKRFGCVAVVDEGQKLKGIIT 268 (341)
Q Consensus 239 i~eal~~m~~~~~g~v~Vvd~~~~liGIIT 268 (341)
+.+++..|.+++.|+++|+..+..+.-++.
T Consensus 1 i~~a~~~l~~~~iGALiVi~~~~~l~~~~~ 30 (122)
T pfam02457 1 LREAVEGLSKRKTGALIVIERETGLEEYID 30 (122)
T ss_pred CHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 979999998608336999966887799971
No 497
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=26.10 E-value=18 Score=16.52 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHH
Q ss_conf 9999999999999999850338788--875311001111
Q gi|255764505|r 179 AIMQLAIGDALAIALLESRNFSEND--FYVLHPGGKLGT 215 (341)
Q Consensus 179 tt~~l~~~Dalav~l~~~~~~t~~d--f~~~HPgG~lg~ 215 (341)
|-.-..-||-+|+++.. |.-..| |.+|||-|-=|.
T Consensus 202 TN~~I~TGDGMa~A~~~--G~PL~DMEFVQYHPTGLP~t 238 (585)
T TIGR01176 202 TNGGIVTGDGMALAFRH--GVPLRDMEFVQYHPTGLPGT 238 (585)
T ss_pred CCCCCCCCCHHHHHHHC--CCCCCCCCCEEECCCCCCCC
T ss_conf 58873126148999847--88833243010068898865
No 498
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.05 E-value=44 Score=13.69 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred CEEEEE--ECCCCCHHHHHHHHHHHCC----------------CCCEEEEECCCCCH
Q ss_conf 707898--3687807887666663204----------------56279984478895
Q gi|255764505|r 113 DLIIVL--SWSGSSDELKAILYYARRF----------------SIPLIAITSENKSV 151 (341)
Q Consensus 113 Dv~i~i--S~SG~t~e~~~~~~~~k~~----------------~~~iI~iT~~~~S~ 151 (341)
|++|.+ .+|.||+.|.++.+....+ +...||||+-...|
T Consensus 211 D~miVVGg~nSsNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGITAGASTP 267 (281)
T PRK12360 211 DVMFVIGGKHSSNTQKLVKICKKECPNTYHIETAKELDLEMLKDYKIIGITAGASTP 267 (281)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCHHHCCHHHHCCCCEEEEECCCCCC
T ss_conf 999998888996489999999987998799698277999895799989985564786
No 499
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=25.94 E-value=44 Score=13.67 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHH-HCCCCCE--EEEECCCCCHHHHCCCCEEEEE
Q ss_conf 047078983687807887666663-2045627--9984478895452145337688
Q gi|255764505|r 111 RDDLIIVLSWSGSSDELKAILYYA-RRFSIPL--IAITSENKSVVACHADIVLTLP 163 (341)
Q Consensus 111 ~~Dv~i~iS~SG~t~e~~~~~~~~-k~~~~~i--I~iT~~~~S~la~~ad~~l~~~ 163 (341)
+.+|+++.+-.|.|.=|+..++-+ +++|+++ -++......-+-+..|++|.-|
T Consensus 46 ~~~iLl~CaaGmstsLLv~~l~k~A~~~~~~~~i~A~~~~~~~e~~~~~d~VlLaP 101 (142)
T TIGR00853 46 ETNILLLCAAGMSTSLLVNKLNKAAKEYGVPVKIAAVSYGAAMEILDDADVVLLAP 101 (142)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCEEEEHH
T ss_conf 21168887697354789999999998459975888405763443353504311203
No 500
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.92 E-value=34 Score=14.44 Aligned_cols=31 Identities=39% Similarity=0.755 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHCCCEEECCCEEEEEECCCC
Q ss_conf 8861101233023202301210470789836878
Q gi|255764505|r 90 GTPSFFVHAAEASHGDLGMITRDDLIIVLSWSGS 123 (341)
Q Consensus 90 G~~a~~~~~~ea~Hgdlg~i~~~Dv~i~iS~SG~ 123 (341)
+.|..++||.||.- +| |..+|.|-..|.-|+
T Consensus 29 ~~p~v~i~p~DA~~--~G-I~dGd~V~v~n~~G~ 59 (116)
T cd02786 29 GEPTLLIHPADAAA--RG-IADGDLVVVFNDRGS 59 (116)
T ss_pred CCCEEEECHHHHHH--CC-CCCCCEEEEECCCEE
T ss_conf 99869999999988--59-999999999789989
Done!